mRNA_C-tenellus_contig10951.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10951.1.1
Unique NamemRNA_C-tenellus_contig10951.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A4V1U713_9BURK (ABC transporter ATP-binding protein/permease n=2 Tax=Comamonadaceae TaxID=80864 RepID=A0A4V1U713_9BURK)

HSP 1 Score: 91.3 bits (225), Expect = 7.560e-20
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    7 KGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            +GLT HTP    ++ QDLS  +A G+++LITGPSGCGKSSLLRA+AGLW TG+GT+Q P    + F+PQ
Sbjct:  374 EGLTLHTPQFGRLLVQDLSLKLAAGDALLITGPSGCGKSSLLRAMAGLWRTGQGTVQHPPLDDMFFLPQ 442          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A497V1U8_9BURK (Putative ATP-binding cassette transporter n=5 Tax=Acidovorax TaxID=12916 RepID=A0A497V1U8_9BURK)

HSP 1 Score: 89.4 bits (220), Expect = 3.660e-19
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    7 KGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            +GLT HTP    ++ QDLS ++A  +++LITGPSGCGKSSLLRA+AGLW TG+GT+Q P    + F+PQ
Sbjct:  463 EGLTLHTPQFGRLLVQDLSLTLAAADALLITGPSGCGKSSLLRAMAGLWRTGQGTVQHPPLQDMFFLPQ 531          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A4Q6GNC3_9GAMM (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6GNC3_9GAMM)

HSP 1 Score: 86.7 bits (213), Expect = 1.070e-18
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 KGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            + LT H P  + V+ ++LS ++A G+++LITG SGCGKSSLLRA+AGLW TG G IQRP   Q  F+PQ
Sbjct:   88 QALTLHPPQSERVLIKELSLALAPGDALLITGESGCGKSSLLRAIAGLWHTGSGVIQRPALDQFFFLPQ 156          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: UPI0019121F9E (ABC transporter ATP-binding protein/permease n=1 Tax=Rhodocyclus purpureus TaxID=1067 RepID=UPI0019121F9E)

HSP 1 Score: 87.4 bits (215), Expect = 1.710e-18
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 KGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            +GL+ HTPD   V+ +DLS +V  GE +LI G SGCGKSSLLRA+AGLW  G GT+ RP    ++F+PQ
Sbjct:  357 RGLSLHTPDGGRVLVRDLSITVKTGEGLLIVGESGCGKSSLLRAIAGLWYAGSGTVFRPPPEDILFLPQ 425          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A0Q4Y5A0_9BURK (ABC transporter ATP-binding protein n=2 Tax=Pseudorhodoferax sp. Leaf267 TaxID=1736316 RepID=A0A0Q4Y5A0_9BURK)

HSP 1 Score: 87.0 bits (214), Expect = 2.320e-18
Identity = 37/71 (52.11%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 GSKGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            G++GLT +TP  ++++ + LSF++A G+++LITGPSGCGKSSLLRA+AGLW  G G++  P   ++ F+PQ
Sbjct:  348 GAQGLTLYTPRAEQMLIERLSFTLAPGDALLITGPSGCGKSSLLRALAGLWHNGSGSVSHPPRGEMFFLPQ 418          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A846E629_9CYAN (ABC transporter ATP-binding protein/permease n=1 Tax=Desertifilum sp. SIO1I2 TaxID=2607799 RepID=A0A846E629_9CYAN)

HSP 1 Score: 85.9 bits (211), Expect = 3.060e-18
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   13 LTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            L   TP+ +  +  DLS  +  GES+L+ GPSGCGKSSLLRA+AGLW +G GTI RP   QV+F+PQ
Sbjct:  137 LNLQTPNHQRTLIADLSVELPPGESLLVMGPSGCGKSSLLRAIAGLWDSGTGTIHRPASEQVLFLPQ 203          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A6I5NLA4_9CYAN (ABC transporter ATP-binding protein/permease n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NLA4_9CYAN)

HSP 1 Score: 86.7 bits (213), Expect = 3.220e-18
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   13 LTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            LT  TP+ +  + +DL+  +A   S+L+ GPSGCGKSSLLRA+AGLW TGKG IQRP   Q++F+PQ
Sbjct:  398 LTLQTPNYQRTLIEDLTLELATDSSLLVAGPSGCGKSSLLRAIAGLWNTGKGLIQRPTMQQMLFLPQ 464          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A520GFL5_9BURK (ABC transporter ATP-binding protein/permease (Fragment) n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520GFL5_9BURK)

HSP 1 Score: 86.3 bits (212), Expect = 3.790e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   13 LTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            LT +TP    ++ +DLS S+A G+ +LITGPSGCGKSSLLRA+AGLW TG GT++ P   +V F+PQ
Sbjct:  247 LTLYTPRFGRLLVRDLSLSLAPGDGLLITGPSGCGKSSLLRALAGLWRTGSGTVRHPPPQEVFFLPQ 313          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: A0A7S2UTV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UTV1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.220e-18
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 KGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            + LT  TPD   V+ +D+ F++ KGE++LI G SG GKSSLLRA+AGLWT G G+I RP + +V F+PQ
Sbjct:   87 RNLTVKTPDGNRVLLRDVDFNLNKGENLLIVGDSGVGKSSLLRAIAGLWTCGGGSIARPRNDEVYFLPQ 155          
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Match: UPI001FE71013 (ATP-binding cassette domain-containing protein n=1 Tax=Chamaesiphon polymorphus TaxID=2107691 RepID=UPI001FE71013)

HSP 1 Score: 84.3 bits (207), Expect = 5.760e-18
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   10 GLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGLWTTGKGTIQRPVDTQVMFVPQ 213
            GLT +TP+ ++ + ++LSF +   +S+L+ G SGCGKSSLLRA+AGLW  GKGTI+ P  T+ +F+PQ
Sbjct:   79 GLTLNTPNAEQTLFENLSFELTPAQSLLVVGSSGCGKSSLLRAIAGLWCNGKGTIESPDYTEALFLPQ 146          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10951.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V1U713_9BURK7.560e-2059.42ABC transporter ATP-binding protein/permease n=2 T... [more]
A0A497V1U8_9BURK3.660e-1957.97Putative ATP-binding cassette transporter n=5 Tax=... [more]
A0A4Q6GNC3_9GAMM1.070e-1856.52ATP-binding cassette domain-containing protein (Fr... [more]
UPI0019121F9E1.710e-1856.52ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A0Q4Y5A0_9BURK2.320e-1852.11ABC transporter ATP-binding protein n=2 Tax=Pseudo... [more]
A0A846E629_9CYAN3.060e-1856.72ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A6I5NLA4_9CYAN3.220e-1856.72ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A520GFL5_9BURK3.790e-1858.21ABC transporter ATP-binding protein/permease (Frag... [more]
A0A7S2UTV1_9STRA4.220e-1855.07Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
UPI001FE710135.760e-1852.94ATP-binding cassette domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10951contigC-tenellus_contig10951:146..703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLD8
Preferred nameABCD2
PFAMsABC_membrane_2,ABC_tran
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K15628
KEGG TC3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
Exons2
Evalue6.79e-21
EggNOG OGsCOG4178@1|root,KOG0064@2759|Eukaryota
Descriptionlong-chain fatty acid transporter activity
Cds size213
COG categoryGO
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.289462-CDS-C-tenellus_contig10951:145..2241680789156.289462-CDS-C-tenellus_contig10951:145..224Choristocarpus tenellus KU2346CDSC-tenellus_contig10951 146..224 -
1680789156.3013875-CDS-C-tenellus_contig10951:569..7031680789156.3013875-CDS-C-tenellus_contig10951:569..703Choristocarpus tenellus KU2346CDSC-tenellus_contig10951 570..703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10951.1.1prot_C-tenellus_contig10951.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10951 146..703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10951.1.1

>prot_C-tenellus_contig10951.1.1 ID=prot_C-tenellus_contig10951.1.1|Name=mRNA_C-tenellus_contig10951.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
GSKGLTFHTPDEKEVICQDLSFSVAKGESVLITGPSGCGKSSLLRAVAGL
WTTGKGTIQRPVDTQVMFVPQ
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mRNA from alignment at C-tenellus_contig10951:146..703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10951.1.1 ID=mRNA_C-tenellus_contig10951.1.1|Name=mRNA_C-tenellus_contig10951.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=558bp|location=Sequence derived from alignment at C-tenellus_contig10951:146..703- (Choristocarpus tenellus KU2346)
GGTAGCAAGGGCCTGACCTTCCACACTCCAGATGAGAAGGAGGTGATATG TCAAGACCTATCCTTCTCTGTGGCAAAGGGGGAGTCAGTGCTGATCACTG GGCCTTCTGGATGTGGAAAATCGTCTTTACTCAGGTGCACCACCGGCATG CAGACCAATGTCTAGCCGAATCTCATCGGCAAAAACGTTGAGGCTATGAA GATTTTCATTTGTGTGTGTATATGTACATAGGATTCAGCTCTAGGATGCC TTTCTTGCATGGATTGTAATCTTCGTATTGGTAGAAGTAGGTGCGATAGG GGTTTGTTATGGTTTTCGAGGGCCTGCACATGCGTTTAGGTGAGTGAGGG GTTTGCTATTTTTTGAGAGAATGAACTGTACATCTTGTGTACTATGACAT TGTGAAGGGCACTCACACCTGTGAAGCAGTTCTCCAAATATCTACATCCT CGCTGACCCTAGCCCCCATATGCTTACAGGGCAGTGGCAGGACTGTGGAC AACAGGAAAAGGGACAATACAACGGCCCGTGGATACTCAAGTCATGTTTG TGCCGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10951:146..703-

>mRNA_C-tenellus_contig10951.1.1 ID=mRNA_C-tenellus_contig10951.1.1|Name=mRNA_C-tenellus_contig10951.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig10951:146..703- (Choristocarpus tenellus KU2346)
GGTAGCAAGGGCCTGACCTTCCACACTCCAGATGAGAAGGAGGTGATATG
TCAAGACCTATCCTTCTCTGTGGCAAAGGGGGAGTCAGTGCTGATCACTG
GGCCTTCTGGATGTGGAAAATCGTCTTTACTCAGGGCAGTGGCAGGACTG
TGGACAACAGGAAAAGGGACAATACAACGGCCCGTGGATACTCAAGTCAT
GTTTGTGCCGCAG
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