mRNA_C-tenellus_contig10945.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10945.1.1
Unique NamemRNA_C-tenellus_contig10945.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A7S2FQV9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FQV9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.280e-19
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLSS 156
            KDVLTKSGKTVGGGD+SRK+KLL+KQKKGK RAKTVG+V+LSQEAFW+VLSS
Sbjct:  390 KDVLTKSGKTVGGGDSSRKRKLLDKQKKGKARAKTVGKVKLSQEAFWAVLSS 441
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A6H5L112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L112_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.150e-18
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLSSSS 162
            KDVL KSGK VGGGD+SRKKKLL+KQKKGK RAKTVGRVQLSQEAFW+VLS  S
Sbjct:  258 KDVLMKSGKLVGGGDSSRKKKLLDKQKKGKARAKTVGRVQLSQEAFWAVLSGGS 311
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: D8LK14_ECTSI (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK14_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.160e-18
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLSSSS 162
            KDVL KSGK VGGGD+SRKKKLL+KQKKGK RAKTVGRVQLSQEAFW+VLS  S
Sbjct:  640 KDVLMKSGKLVGGGDSSRKKKLLDKQKKGKARAKTVGRVQLSQEAFWAVLSGGS 693
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A7S2SUD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUD5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.130e-17
Identity = 41/50 (82.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVL 150
            KDVLTKSGKTVGGGDA+RK+KLLEKQK+GK RAK+VG+V+L+QEAFW+VL
Sbjct:  374 KDVLTKSGKTVGGGDATRKRKLLEKQKRGKARAKSVGKVELTQEAFWAVL 423
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A836CD47_9STRA (Translation factor GUF1 homolog, mitochondrial n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD47_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.190e-15
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLS 153
            KDVL KSGKTVGGGD SRK+KLL+KQK+GK RAKTVG+VQL Q AFW++LS
Sbjct:  490 KDVLIKSGKTVGGGDPSRKRKLLDKQKEGKRRAKTVGKVQLPQSAFWALLS 540
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A6A4CPU1_9STRA (Translation factor GUF1 homolog, mitochondrial n=5 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A4CPU1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.200e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLS 153
            KDVL KSGKTVGGGD++RKKKLL KQKKGK R +TV  VQLSQ+AFWSVLS
Sbjct:  606 KDVLIKSGKTVGGGDSTRKKKLLAKQKKGKQRMRTVSNVQLSQDAFWSVLS 656
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A836CPP8_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.210e-15
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLS 153
            KDVL KSGKTVGGGD SRK+KLL+KQK+GK RAKTVG+VQL Q AFW++LS
Sbjct:  638 KDVLIKSGKTVGGGDPSRKRKLLDKQKEGKRRAKTVGKVQLPQSAFWALLS 688
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A5D6XXH5_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.110e-15
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLS 153
            KDVL KSGKTVGGGDA+RKKKLL KQK GK R KTV  VQLSQ+AFWSV+S
Sbjct:  567 KDVLIKSGKTVGGGDATRKKKLLAKQKDGKRRMKTVSNVQLSQDAFWSVMS 617
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BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: A0A0W8DML4_PHYNI (Tr-type G domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DML4_PHYNI)

HSP 1 Score: 76.6 bits (187), Expect = 7.460e-15
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLS 153
            KDVL KSGKTVGGGD++RKKKLL KQK+GK R +TV  VQLSQ+AFWSVLS
Sbjct:  431 KDVLIKSGKTVGGGDSTRKKKLLAKQKQGKRRMRTVANVQLSQDAFWSVLS 481
[Close]
BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Match: K3WIL9_GLOUD (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIL9_GLOUD)

HSP 1 Score: 76.6 bits (187), Expect = 7.590e-15
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVLS 153
            KDVL KSGKTVGGGD +RKKKLL KQK+GK R KT+  VQLSQ+AFWSVLS
Sbjct:  473 KDVLIKSGKTVGGGDQTRKKKLLAKQKEGKKRMKTISNVQLSQDAFWSVLS 523
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10945.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FQV9_9STRA7.280e-1986.54Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6H5L112_9PHAE1.150e-1885.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK14_ECTSI3.160e-1885.19Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S2SUD5_9STRA3.130e-1782.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CD47_9STRA2.190e-1578.43Translation factor GUF1 homolog, mitochondrial n=2... [more]
A0A6A4CPU1_9STRA2.200e-1580.39Translation factor GUF1 homolog, mitochondrial n=5... [more]
A0A836CPP8_9STRA2.210e-1578.43Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A5D6XXH5_9STRA4.110e-1580.39Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A0W8DML4_PHYNI7.460e-1578.43Tr-type G domain-containing protein n=1 Tax=Phytop... [more]
K3WIL9_GLOUD7.590e-1578.43Translation factor GUF1 homolog, mitochondrial n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10945contigC-tenellus_contig10945:4626..4814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LK14
PFAMsEFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K03596,ko:K21594
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons1
Evalue5.19e-19
EggNOG OGsCOG0481@1|root,KOG0462@2759|Eukaryota
Ec32 ortholog descriptionGuf1, mitochondrial translation elongation factor EF4 (LepA)
Ec32 orthologEc-06_007800.1
DescriptionGTPase activity
Cds size189
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.1044443-CDS-C-tenellus_contig10945:4625..48141680789156.1044443-CDS-C-tenellus_contig10945:4625..4814Choristocarpus tenellus KU2346CDSC-tenellus_contig10945 4626..4814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10945.1.1prot_C-tenellus_contig10945.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10945 4626..4814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10945.1.1

>prot_C-tenellus_contig10945.1.1 ID=prot_C-tenellus_contig10945.1.1|Name=mRNA_C-tenellus_contig10945.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=63bp
KDVLTKSGKTVGGGDASRKKKLLEKQKKGKLRAKTVGRVQLSQEAFWSVL
SSSSSRGSGGNQ*
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mRNA from alignment at C-tenellus_contig10945:4626..4814-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10945.1.1 ID=mRNA_C-tenellus_contig10945.1.1|Name=mRNA_C-tenellus_contig10945.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=189bp|location=Sequence derived from alignment at C-tenellus_contig10945:4626..4814- (Choristocarpus tenellus KU2346)
AAGGACGTCTTGACGAAGTCAGGAAAAACAGTGGGGGGAGGGGATGCATC
TCGCAAGAAGAAGCTCCTTGAGAAGCAGAAGAAAGGGAAGCTGAGGGCCA
AGACTGTGGGCAGGGTGCAACTCAGCCAGGAGGCCTTTTGGTCTGTGCTC
TCCTCTTCTTCCTCTAGGGGCAGTGGTGGCAACCAATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10945:4626..4814-

>mRNA_C-tenellus_contig10945.1.1 ID=mRNA_C-tenellus_contig10945.1.1|Name=mRNA_C-tenellus_contig10945.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=189bp|location=Sequence derived from alignment at C-tenellus_contig10945:4626..4814- (Choristocarpus tenellus KU2346)
AAGGACGTCTTGACGAAGTCAGGAAAAACAGTGGGGGGAGGGGATGCATC
TCGCAAGAAGAAGCTCCTTGAGAAGCAGAAGAAAGGGAAGCTGAGGGCCA
AGACTGTGGGCAGGGTGCAACTCAGCCAGGAGGCCTTTTGGTCTGTGCTC
TCCTCTTCTTCCTCTAGGGGCAGTGGTGGCAACCAATGA
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