mRNA_C-tenellus_contig10940.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10940.1.1
Unique NamemRNA_C-tenellus_contig10940.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10940.1.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.010e-54
Identity = 114/215 (53.02%), Postives = 143/215 (66.51%), Query Frame = 1 
Query:    1 KMMAAVLNMMATIWESIAPSLEMGINRSCLDLIVETIDGEMLALLHRQYCSKPGPARGAFMRLAGLAGDDLAPGMLEEVVVEMLGLPEDAQPSAYGPTVALLCSWGQHGHLVGAIVDSLQSAFHVQSLTLALAIQPSSALTDSPTVFDGCDRSLIGGRGKRRRSAADNAPGPHGLPPTLALNMLSHLLAGGGGHPATVAARSSIMSSHNIVKNIK 645
            K M+ +LN++A+IWESI P+LE  IN   LDLI +T+ GE L++L+R++C +    R AFMRLAGLAG DLAPGMLE+VVVEML LP DA PSAYGPTV LLCSWGQH HLVGA+V+SL+  F    +T   A+  +     S  + DG      GGRG           G   +P  LALNML HLLAGG GHP+T AAR +IM+S   V +++
Sbjct:  586 KTMSGILNLIASIWESILPALEKTINEPSLDLIQQTVTGEALSILYRRFCGQD-ECRAAFMRLAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKFFSAPRITTTTAVDEAG----SGEMDDGDHDE--GGRGG----------GGMCIPAPLALNMLGHLLAGGEGHPSTGAARDAIMASDEAVGSLE 783
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BLAST of mRNA_C-tenellus_contig10940.1.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.380e-54
Identity = 117/226 (51.77%), Postives = 145/226 (64.16%), Query Frame = 1 
Query:    1 KMMAAVLNMMATIWESIAPSLEMGINRSCLDLIVETIDGEMLALLHRQYCSKPGPARGAFMRLAGLAGDDLAPGMLEEVVVEMLGLPEDAQPSAYGPTVALLCSWGQHGHLVGAIVDSLQSAFHVQSLTLALAIQPSSALTDSPTVFDGCDRSLIGGRGKRRRSAADNAPGPHG-----------LPPTLALNMLSHLLAGGGGHPATVAARSSIMSSHNIVKNIK 645
            K M+ +LN++A+IWESI P+LE  IN   LDLI +T+ GE L++L+R++ S     R AFMR+AGLAG DLAPGMLE+VVVEML LP DA PSAYGPTV LLCSWGQH HLVGA+V+SL+ AF V   T         A   S  + DG  +S    RGKRR  A+                   +P  LALNML HLLAGG GHP+T AAR +IM+S   V +++
Sbjct:  717 KTMSGILNLIASIWESILPALEKTINEPSLDLIQQTVTGEALSILYRRF-SGQDECRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKAFSVPVKTTTATATDEEA--GSGEIADGKGKSS---RGKRRXPASRKEGNXXXXXXXXXXXXTCIPAPLALNMLGHLLAGGEGHPSTGAARDAIMASDEAVGSLE 936
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG90_9PHAE1.010e-5453.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF93_ECTSI1.380e-5451.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10940contigC-tenellus_contig10940:681..4566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF93
Preferred nameNCAPG2
PFAMsCondensin2nSMC
Model size645
Max annot lvl2759|Eukaryota
KEGG koko:K11492
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
Exons4
Evalue1.02e-54
EggNOG OGsKOG1949@1|root,KOG1949@2759|Eukaryota
Descriptioninner cell mass cell proliferation
Cds size642
COG categoryQ
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.0261924-UTR-C-tenellus_contig10940:680..6831680789156.0261924-UTR-C-tenellus_contig10940:680..683Choristocarpus tenellus KU2346UTRC-tenellus_contig10940 681..683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.0365796-CDS-C-tenellus_contig10940:683..7951680789156.0365796-CDS-C-tenellus_contig10940:683..795Choristocarpus tenellus KU2346CDSC-tenellus_contig10940 684..795 +
1680789156.0448565-CDS-C-tenellus_contig10940:1299..14481680789156.0448565-CDS-C-tenellus_contig10940:1299..1448Choristocarpus tenellus KU2346CDSC-tenellus_contig10940 1300..1448 +
1680789156.053333-CDS-C-tenellus_contig10940:2676..27851680789156.053333-CDS-C-tenellus_contig10940:2676..2785Choristocarpus tenellus KU2346CDSC-tenellus_contig10940 2677..2785 +
1680789156.069894-CDS-C-tenellus_contig10940:4294..45661680789156.069894-CDS-C-tenellus_contig10940:4294..4566Choristocarpus tenellus KU2346CDSC-tenellus_contig10940 4295..4566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10940.1.1prot_C-tenellus_contig10940.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10940 684..4566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10940.1.1

>prot_C-tenellus_contig10940.1.1 ID=prot_C-tenellus_contig10940.1.1|Name=mRNA_C-tenellus_contig10940.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=214bp
MMAAVLNMMATIWESIAPSLEMGINRSCLDLIVETIDGEMLALLHRQYCS
KPGPARGAFMRLAGLAGDDLAPGMLEEVVVEMLGLPEDAQPSAYGPTVAL
LCSWGQHGHLVGAIVDSLQSAFHVQSLTLALAIQPSSALTDSPTVFDGCD
RSLIGGRGKRRRSAADNAPGPHGLPPTLALNMLSHLLAGGGGHPATVAAR
SSIMSSHNIVKNIK
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mRNA from alignment at C-tenellus_contig10940:681..4566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10940.1.1 ID=mRNA_C-tenellus_contig10940.1.1|Name=mRNA_C-tenellus_contig10940.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3886bp|location=Sequence derived from alignment at C-tenellus_contig10940:681..4566+ (Choristocarpus tenellus KU2346)
AAGATGATGGCGGCAGTCCTCAATATGATGGCAACTATTTGGGAGAGCAT
TGCCCCCTCCTTGGAGATGGGGATTAACAGGTCTTGCCTGGACCTTATTG
TGGAGACAATTGATGGTGGGCAGTCTGTGTAGACTAAGTGTGTATAAATG
GATAGACTTGAGAGCACAATGCAACCCATGGGGACATGTATATAATAACA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CATACATAAGGATAGACTAGATGGTGTTTTCCGTGTGAAGCTGAGATGTG
TGCAATCGTGTTGGCAGATGCATGTAACATATGATATTGGTAGTGGTGTA
GGCATTAACATGTTATTAGTGCATCTACCACTTTATCATTAATATATATA
TATATATATATATTAGAATATCATTTGTGTATGTATCAGTACATCGTTAC
TGTATATATTTGTATAGGTGTTCCTGTGAGAAGAAATATTGAAAACGCCT
ATGTGGTGTACATAACCTTTCTCAATACATCAAATGCAAGCAAAGTGATC
TTGTATGACCAAAACCCTGCCTCCACACTCCATTTACTGATGTGATGTGA
TGTGATGTGATTGGTTCAGGTGAGATGCTAGCTCTCCTCCACCGCCAGTA
TTGTTCCAAGCCTGGCCCTGCAAGGGGGGCCTTCATGCGACTAGCTGGAC
TGGCTGGAGATGACCTTGCTCCCGGCATGCTGGAGGAGGTGGTAGTGGAG
ATGCTGGGGCTGCCGGAGGTGAGGCATGCATGTGTGAAGGGAGGAAAGTG
CTTTCAAGAATGATTAACAGTGTATGTGCATATGTATGTATGTATTCATT
ATTGATTGGTTGATTGTAGCACATACACACATTAGGTTAAATATTTTCAG
ACCAGTGGTCAGAGATTTAACACACACACACACACACACACACACACACA
AAAGGAGAGTCAAGATGTATGTAGTTTTTTTTTAATGTATGAAAATAAGA
AAAACATAAGGAACAAGTTTTGTGCTATGTGCGTGTACTATTTTTTTCCT
AATTTGTATGTGAAAAACAGTGTATACGAATGGTAGGTACCCGAAGTGCA
TTCAACCATGTAAAAGGTACACCTTCTTGAAGTACCAGAGTCTGATGGGG
TAGACAAACGTTTTTTCTGCTGTAGATACATGGTTACAATTGTATGAACA
GCACTACCTACCACCTTTTTTTTATTATTAGGCAGTGTGGTGGCGCTCTG
TCATTGGTTGCTGCTTATTTGCCGATCTTCCTCGCAATGGGAAGGCGTTT
TTTGGTGTTTCACCATTTCTACGCAGAGTACAGTCAGTCAGTTTGAGTGC
AGTTTTTGGTACTACTATTGTGGGAACAGTTTCTTTTTTCTTTTATTTCT
TTTATTTTTTATTTTTTAAATAGATGCTTCCCGTGGTATATTGTGTGTGT
GTGTTTGGGGTTGTGAAGTGATTTTTCATTTGTGAAGTGTTTTGTTGAGT
TGTGATGGATTGACTCGAAGTGTTGGTGCAGCGGGTGGAGAGTAGAGGGT
GGATGCCTGGAAGACAATGGATGGAGAGTAGAGGGTTTGATTGTAATCTG
GACTGATATCGGTTAGTTCAATGAGGGGCGGATTGGCTGGATAAAATCGT
TGTGATTTTCATTATTATTATTATTATTATTATCTTTTACGTCTCTCTCA
CTATATATATACTGGAGTACGTAACTGATTTTTTATGTATGCTTTTTTGT
CATTTCAACCCTAACCCTAAAACCCTCCAGCTTTTTATATTATTTGTCTA
CAACAACTGTTTCAAATACTGTATGTAAAAGTATGTAAAAGGGAGTCATT
CAAACACAACCTTCAAACTCTACCGCTTCAGCTGATGCACACTCCACTCC
CTAACCCTAACTCTATTGCCCTAACCCTAACTCTGTTACACTGTTATTCT
TGTTGCTTGTAATCATCCCCCCCCCCCCCTCTTCCTTCCATTGCAGGATG
CTCAGCCCTCTGCATATGGCCCCACAGTTGCCCTCCTATGCTCGTGGGGT
CAGCATGGGCACCTGGTGGGGGCCATCGTGGACAGCCTGCAGTCTGCGTT
TCATGGTGTTACCCCTGGTGCAGACCAGCCTGTTGGTGTGTACTTTGTCT
TTGTCGCTTTTTTTTTTCTTTGGAGGTGCTACTCTTGTTATATTAATTAT
TATTATTTTTACTTTTAAACTTGAATTTAATTTTTATTTAAATATTTTGG
GGCGGATATCGTGTGCAGTTCACTAGAGAACCCTCGCCCCTTACATATGT
AGTATATATATAAAGAGAGGGATAAAGATAGAGTTTTTTATTTGAAGTCC
TTCTGCAGTATGTAGCAAGAAAATCTGGAAGGAGTATCTTTTATTGCTGA
TTTATTGGCATATATATTGTGCAGGGGAATTCATTTTTTGTATATTTAGG
GTTTCCTATGTATACTCTTGGCGTTATTGTATGTGCTGTTTGTTGGCACT
GCATCAATGATGTTGGTGCTGTTGTTTAAAGGAATGACAGGAGAAGGTTT
ATTTATGTATATATATTGCATCAATGATGAATATAGTAAGGGGATTGAAC
CCCTCCAAAGATCATTTTAAAAGACCTGTCACAGTTTTGATTTTTGATGT
GAATGGACACAAAAAGAGGAACAATTTGTATCCGTACAGAAAAAAAGTAG
ACTTGAGACAGTTCAATGAAATGCGATGTTTGTACATTATATCAGTTGAT
GGTAGCTACAGTCTGTTTTCTTGGTGGTGAAAGTGTGACTTTTGTGTACC
TTCCATGCTCTATATTACCTACTCCTCCACCGCTTTGAACTCCAAACTCC
TTTCAATGTTTCAATCTTATCCCATCTAATCTTGCGATTGTGATATCATA
CTATCTGATACTATGTGACACTATCTAATACTATATGATACTACATGACA
CTATCTAATACTGTATGAGACTATATGATACTATATGACACTATCTGATA
CTTTCAGTGCTATGTTTTGGCTCTGAAAGAGTTTTGTCGAAGGGCATTCT
GTTGGGGTTGGGGTTAGGTTTAGGTTTATATATATTGTGAGTGTGTGTCC
GTTCCCCTCTACATTGATTGCTGTGTATAGTACTCTGTACTCAAATTTAT
ATTATGTAGTACATGAATAGACAATGTACATTTCTCGACAAGTAGGTAGC
AATGTAGAAAAAACACCGACCCCTCTTTTCAGTTTTTTTTGGGGACCTCA
GTACTCTCTTCTCAGTACCTTGGTGTACACTTATTTTTATTGTACTGCTG
TACTGTGAACAGTGTGTTGGAATGTGGATGCTTGTTTTTATTATATTTAT
ATTTATATTTTTTGAAGTACTTTTTTTCAGTTGCAGAGTGTTCCACTGTT
TAATTCTGGGCAAAACTCTTTACGGAATGGTTTTGAAAATATATATAAAT
ATATATATATATTTATTTATTTTTTAATGGAAATGCTCAACGCCATCCTT
ATCTCTAAGAAATAATTGTGTTTTTTGTACACCTGTGTGGTACGATGTTA
ATACCTCCGTGAGCAGTAAGAATTGTTTGTATGCGTAGAGTCGGTCTGCA
CCACCATTGCCTAGTACAATCCCTAACCCTTGCCTTAGCCATTCAACCTT
CCAGTGCATTGACTGACTCTCCCACTGTATTTGATGGCTGTGACCGTTCC
TTGATAGGTGGGAGGGGTAAGCGCCGTCGATCTGCTGCAGACAATGCTCC
CGGACCTCATGGCCTTCCCCCCACCCTTGCATTGAACATGCTTAGTCATC
TGTTGGCGGGGGGGGGGGGGCACCCGGCTACTGTGGCAGCTCGCAGTTCG
ATCATGTCTAGTCACAACATTGTCAAGAACATCAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10940:681..4566+

>mRNA_C-tenellus_contig10940.1.1 ID=mRNA_C-tenellus_contig10940.1.1|Name=mRNA_C-tenellus_contig10940.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=642bp|location=Sequence derived from alignment at C-tenellus_contig10940:681..4566+ (Choristocarpus tenellus KU2346)
ATGATGGCGGCAGTCCTCAATATGATGGCAACTATTTGGGAGAGCATTGC
CCCCTCCTTGGAGATGGGGATTAACAGGTCTTGCCTGGACCTTATTGTGG
AGACAATTGATGGTGAGATGCTAGCTCTCCTCCACCGCCAGTATTGTTCC
AAGCCTGGCCCTGCAAGGGGGGCCTTCATGCGACTAGCTGGACTGGCTGG
AGATGACCTTGCTCCCGGCATGCTGGAGGAGGTGGTAGTGGAGATGCTGG
GGCTGCCGGAGGATGCTCAGCCCTCTGCATATGGCCCCACAGTTGCCCTC
CTATGCTCGTGGGGTCAGCATGGGCACCTGGTGGGGGCCATCGTGGACAG
CCTGCAGTCTGCGTTTCATGTACAATCCCTAACCCTTGCCTTAGCCATTC
AACCTTCCAGTGCATTGACTGACTCTCCCACTGTATTTGATGGCTGTGAC
CGTTCCTTGATAGGTGGGAGGGGTAAGCGCCGTCGATCTGCTGCAGACAA
TGCTCCCGGACCTCATGGCCTTCCCCCCACCCTTGCATTGAACATGCTTA
GTCATCTGTTGGCGGGGGGGGGGGGGCACCCGGCTACTGTGGCAGCTCGC
AGTTCGATCATGTCTAGTCACAACATTGTCAAGAACATCAAG
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