mRNA_C-tenellus_contig10929.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10929.1.1
Unique NamemRNA_C-tenellus_contig10929.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10929.1.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.360e-14
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:   76 DNEAVQRAKHEQSESVRLLQKTGERDFDLPVHWLPTDDNGAGTSTS---DVEDNDQGERFGGGDNLVDSDNDLGGLEETHSSSLESDKEEPGSRR---RVWLRPTLTSGNHGNLFSVQEGSFAFF 432
            D+ AVQRAK EQ +SVRLL++TGER+FDLPVHWLP  D+G+G   +   D  DN+  E+   G    D D   G  +E   +S +SD E    RR   R   RPT    +     SVQ GSFAFF
Sbjct:  418 DDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPVYDSGSGDEENVGPDTGDNNDAEQDFNGSGGHDHD---GIDDEADDTSSDSDMEPEFRRRGRPRATGRPTT---DRSPPISVQVGSFAFF 536
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10929.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE6.360e-1446.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10929contigC-tenellus_contig10929:988..5126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.230773-UTR-C-tenellus_contig10929:987..10181680789155.230773-UTR-C-tenellus_contig10929:987..1018Choristocarpus tenellus KU2346UTRC-tenellus_contig10929 988..1018 +
1680789155.2632022-UTR-C-tenellus_contig10929:5070..51261680789155.2632022-UTR-C-tenellus_contig10929:5070..5126Choristocarpus tenellus KU2346UTRC-tenellus_contig10929 5071..5126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.2404492-CDS-C-tenellus_contig10929:1018..10631680789155.2404492-CDS-C-tenellus_contig10929:1018..1063Choristocarpus tenellus KU2346CDSC-tenellus_contig10929 1019..1063 +
1680789155.251169-CDS-C-tenellus_contig10929:4770..50701680789155.251169-CDS-C-tenellus_contig10929:4770..5070Choristocarpus tenellus KU2346CDSC-tenellus_contig10929 4771..5070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10929.1.1prot_C-tenellus_contig10929.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10929 1019..5070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10929.1.1

>prot_C-tenellus_contig10929.1.1 ID=prot_C-tenellus_contig10929.1.1|Name=mRNA_C-tenellus_contig10929.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
MPHKSTIVIYAANKETMKPFRERNTSKASLCDFSKRQGNEISTSQSIGFP
PMTMALELAPATSKTMTRANVLVGGIISLIVTMISAGSRKHTLPHWRVTR
KNLAPVDGFGFVQR*
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mRNA from alignment at C-tenellus_contig10929:988..5126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10929.1.1 ID=mRNA_C-tenellus_contig10929.1.1|Name=mRNA_C-tenellus_contig10929.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4139bp|location=Sequence derived from alignment at C-tenellus_contig10929:988..5126+ (Choristocarpus tenellus KU2346)
AGACTACTGGGCTGATACATACGGGCAGTTCATGCCTCACAAGTCAACAA
TTGTGATCTACGCCGCGAACAAAGAGGTCGATTTTCCCCTTGGTTGTGGA
GAGGTTGGCTGCACCCTGTTGTGTTGGAGTTAGATGCAAACCGTGTGAAC
CGGCAGCACGTAGAAAAGGTGGATCTAAGTAGTGTATTGAGGGGTAGATA
TTCATTACCTTGACTGGTTTGATATTATGGTTAAAAGAACATGCCAAGAT
TCATACAAAGTGCTATCCTTTTCGTTTGCTATGTCGATATATCAATATTC
ATTATGATACTCGTTGTCGACAATTTTACGTAGGAAGACCCAATAAATGT
TATTTCAACACCGAGCACACATACTCTGCGGCCCCGGACCCGGTCTGAAA
TTGGTAGGAAAAGTGTGTACTTCGTATGTACAAAGCGCTTTGCGATGATG
ATGATGATGGTGGTAGATTCGCCTCCTTTGTCGCCTCTGCAAACGGCAGC
AAGGCCCGAACCGAATGACGCTCATGGCAGATTTAATCAGATCATTGTAT
TTGCTCTTTCGTAACGCATGATGTAAGCTTGCTTGATCCTGTCTTCCGCG
TTCTCAGTAAATTTATTTGTCAGTCCGCCTTCGAGAGATGTTGCAGGGGT
GTTCTTCGAGTGTTCCTTCTCAATAACTCCTCACTTGCCCACACAACCAA
CATTTTTAATTAAGAGCTATACAAGGATTTTTGCAAAGAGGCAATACGAG
TGTATCCTGACGACCCTTCCAAGCGGGTAAGCAAGGAGTACTTCCTCCGA
TTAGTCAGAGAGGACAAGCCCAACATCCGGGTGAGGGTAGGAGGTGAGTT
TATGAAATGTGACATATGTGTCACGTTAAAAGAGAAGCGGCACGGTTGCG
CCTGGTGTAAAATCCACCAACGACTCCACCGTCCTCGAGTCCATCGATAT
GGAGCTGTCAGACCATCGACAGGTAGGTGTCGAGCGTTAATTTTGCAACA
AGGGTACAGTGACAACATATCACCGTCATTTCCCTCCTAACCCTAAGTAA
ATCCGTGTCCTTTTGCGAATGAAGACTCCCACATAGGTGTTTATGGCAGC
AGCAGTAGCCTCACTCACCACAAAACTTGCTGTTATTTGCTGCCCAAACA
CCTTGTAAGACAGACTGTTTCCTGATAGTGTACAACGGGCTATGGGAGAG
ACAGGTCATGCAGCGGTCTTCCGGCCCGGTACGTGCGTACTTCCTACTAT
CCCGACAACTTGGTGTTTGTTTTGAACGCAGCAATAAAAAACATATCCCA
ATACTAACATATCTTGATACCCAGACTACATTTTTGTTACTAACCAACAT
GATACGTGTTAACAAGCGGCATTTTTGTTTTACTCTGAGCAGATTTATTT
GATTAATTCACGTGATGTTGCTGTCCCCCATTCACCAGGTTATCAAAGCG
GATCGGCTGGTCGTCGCCAACAGCACCAGCAACGCCATGCGGGCCAAAGC
CGACGGCAAACCTCTCGGCTTCGTGTTCATGTCCGTAGACGCCGCGAACC
AGACAGCATACGCCCTCCCAGCACTTTACCCACCTACCCACGGCGGTGAC
AGGTAACCACACGCACGCACAGTCCATCCGACAAGAACTTTGTAGCCGCA
CGCGGAAGAGAGTAGAAGACCATGTTTTATCCTACGGATGAGTGCAAAGT
CCCAAGAAATAATCACCAAAACAAATGCACATAATTCCACTACTACCTAT
TCAGTTCATCATGATGACCTTGCTTTACATGTTCCTTTCATTCATGTCCC
CCTTATCAGGGGCTACTCCGAGCGCCAGAAGATCATGGCCGCACACGTCG
AAGGCCAGTTCGCGGAGGTGTTCTTCACTCCTATCAATCTCGGAGGAGGT
ACGTACTGTAGAGTAGCGTAAGAGCTAATAATCAACGGGTAGTGGAGATC
GCAGACATGTACATCAGCCGTATGGGTGTATGTCCTCTACATCGCATAAA
CAACTTACATTACCCCTCTTTTTAGCTCCGAATAAACAATGCGTAAATGA
GCAGAGTACTTTTTACCAACAGTTGTTTAACATCATTGTTCGTGCAGGTT
GTAACCTTGTCTGCACAGCCACCCACCTTGCCCTCACAAGGCTTATCAAC
AAGTACCGCAATAGCCTCGATGACTCGGGGAATTGCATCATCCAGCACGC
GCATTGGCAGGTAAGAAGGTTTCATCCTGACACGACCTACTCAACACATA
CTCGCTGAATACCAGTCACCAAGTAACTAACTGCACACTCTTTAGTTTTG
GTTTGTCTGTTGCAACCTGCATGTATGATGGCGGTGATGTAGGCATTGCG
CTCTAGCAATACTGGAAACCTACCCTGTTCCTCCAAGAAACGCGGCGAAA
TGGGCTGACATATTGGCCTCACGCCCATCCCTCCCTTGCTCCCAACTACC
CAAACTGGTCAGGTCGACAACTGCGTCCCACAGAAAAAGAACAATTTCTT
TCTCGGATACGCGGGGCTGTTGGTTGCAGTGAGTGTCATTCGTGTTGTCG
AGATACATTTTATGATGGTGGGGCACACGCACATCAAAATCGATCAGATC
TTCTCCAGGTAATTAGGCAAGATATATATGCAAGTTCGATAGCCACATAG
TGTTCTTATATGGACAGATACAGCCTCGAGGCTTGCAGCCCACGCTTGTT
GCATTCCTGGAAGGTTTATGGTTGCACACTGTAATTGATCGATAGGCTTT
TGATTTCCCCACAACGAAATTTACCTACAAGAGCAACTGCCTAAACTGTT
TCGTAACATACTCTCGAAAAAAAACAATGAACAAAAAATGTACGCATCAC
GAAATTTTATATTGATTTTTCCATATACATGCATCAGAGCATGTGCCGGC
ATATATATCCTGCTTATCCACGTCGCTTCTTTCGCCCCCGCCTCGAAATT
AACTTGCTTGCATTTCACCTTCAGGTTCTCACGTGGAATAAAAGGCAAAA
ACATATTCACCAGAACACAGCTGGGTGAAGAGCTGCAGGCCTCTTACACG
GAGGTTCCAATATACTACAAGACCCTACGGAAACAGGGAAACTTCAAGGG
ACTCCTTCGCGGTCGCGTCAACCGTGTCCCCAACATCACGAGCTACAGGG
CTTTCCGTGTTGAAAAAGGCGGCGATGGGCGGGTGAAGGTTAGCGTTAAG
CGATACATGCACAACACAGAATGGAGTGGGATAGGCGGAGACCTTGCTAT
GGACCCCAACACCCCTCCACACGACCTCTTCATCGGCCACCCGCCTCATA
TCCAAGATGCACCACCCTACCAGCTCAAGAGCGTTCCCAAGGACGTCATC
CTGAAGGTGGAGCAGCGGTACTAGGCGTCACATGAGCGCCTCCCTGCTGC
GTACTCACCCCTGGGTAAGTCGATTTTTTCGTGAGGAGAGTTAATAGCTA
ATTCTGGTATTCGGTGGCAGCCAAAAAAATCAGGTGCAAGTTTTGTACGA
GGCAGCATTTGCAGCCTTTAGAAAAAAAAATCTTGAAAACTATTGCATTA
TCATGTGTAGTGATCGTCGCATGTTACAATAATAATTACCATAGATTACT
CCCCATAAATGTTTTGAGGGTACCGGTCTTGTACTCAACAGAGACGATTC
CGACGAAATATACACCATCCCTCTCACCACATGCTCCCCGAGCGTATTCA
TGAAACCTCACGCCTGGTAATAAAGTAACATTCATGTATCCATACCGTTG
ATGTCCTCATGCTCATGTATTCCACCTTCGCAGACAATGAAGCCGTTCAG
AGAGCGAAACACGAGCAAAGCGAGTCTGTGCGACTTCTCCAAAAGACAGG
GGAACGAGATTTCGACCTCCCAGTCCATTGGCTTCCCACCGATGACAATG
GCGCTGGAACTAGCACCAGCGACGTCGAAGACAATGACCAGGGCGAACGT
TTTGGTGGGGGGGATAATCTCGTTGATAGTGACAATGATCTCGGCGGGCT
CGAGGAAACACACTCTTCCTCATTGGAGAGTGACAAGGAAGAACCTGGCT
CCCGTCGACGGGTTTGGCTTCGTCCAACGTTGACATCGGGGAACCATGGA
AACCTGTTCTCGGTGCAGGAAGGCAGCTTTGCCTTTTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig10929:988..5126+

>mRNA_C-tenellus_contig10929.1.1 ID=mRNA_C-tenellus_contig10929.1.1|Name=mRNA_C-tenellus_contig10929.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig10929:988..5126+ (Choristocarpus tenellus KU2346)
ATGCCTCACAAGTCAACAATTGTGATCTACGCCGCGAACAAAGAGACAAT
GAAGCCGTTCAGAGAGCGAAACACGAGCAAAGCGAGTCTGTGCGACTTCT
CCAAAAGACAGGGGAACGAGATTTCGACCTCCCAGTCCATTGGCTTCCCA
CCGATGACAATGGCGCTGGAACTAGCACCAGCGACGTCGAAGACAATGAC
CAGGGCGAACGTTTTGGTGGGGGGGATAATCTCGTTGATAGTGACAATGA
TCTCGGCGGGCTCGAGGAAACACACTCTTCCTCATTGGAGAGTGACAAGG
AAGAACCTGGCTCCCGTCGACGGGTTTGGCTTCGTCCAACGTTGA
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