mRNA_C-tenellus_contig10927.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10927.3.1
Unique NamemRNA_C-tenellus_contig10927.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10927.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10927contigC-tenellus_contig10927:3698..4581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size826
Hectar predicted targeting categoryother localisation
Exons2
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.1717012-UTR-C-tenellus_contig10927:3697..37061680789155.1717012-UTR-C-tenellus_contig10927:3697..3706Choristocarpus tenellus KU2346UTRC-tenellus_contig10927 3698..3706 +
1680789155.199224-UTR-C-tenellus_contig10927:4379..45811680789155.199224-UTR-C-tenellus_contig10927:4379..4581Choristocarpus tenellus KU2346UTRC-tenellus_contig10927 4380..4581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.181595-CDS-C-tenellus_contig10927:3706..38041680789155.181595-CDS-C-tenellus_contig10927:3706..3804Choristocarpus tenellus KU2346CDSC-tenellus_contig10927 3707..3804 +
1680789155.1898417-CDS-C-tenellus_contig10927:3862..43791680789155.1898417-CDS-C-tenellus_contig10927:3862..4379Choristocarpus tenellus KU2346CDSC-tenellus_contig10927 3863..4379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10927.3.1prot_C-tenellus_contig10927.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10927 3707..4379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10927.3.1

>prot_C-tenellus_contig10927.3.1 ID=prot_C-tenellus_contig10927.3.1|Name=mRNA_C-tenellus_contig10927.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=205bp
MACTGLPRLSWCGFIGDGGAVPIASAAESCTFILLHGAFCPTYDECLWLV
SCCWTAETNRGHLTYSTWPTPLSTLVSTIPPAPTLQHCVPSPNTVSSPVL
VEAQFVLGSIITFLLLIFRSILPGCPLAPVPLLQLVPISSPTVSSVSLSL
PPPQYPTNTEASGSGSQSLPLPSPYSPWFLFAVLSVGIMLFWASESMCSR
KCNR*
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mRNA from alignment at C-tenellus_contig10927:3698..4581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10927.3.1 ID=mRNA_C-tenellus_contig10927.3.1|Name=mRNA_C-tenellus_contig10927.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=884bp|location=Sequence derived from alignment at C-tenellus_contig10927:3698..4581+ (Choristocarpus tenellus KU2346)
GGTCGATTGATGGCCTGTACAGGGCTCCCAAGGTTGTCTTGGTGTGGCTT
CATAGGAGATGGTGGTGCTGTCCCTATTGCCAGTGCTGCTGAATCGTGCA
CATTCATGTGCTCTCAACATCATAGGGCGCAGTGCCTAGTTGTTCAAATA
TAATGTGTAGAATAGACTATTACATGGAGCATTCTGCCCAACGTATGATG
AATGTCTTTGGCTGGTCTCCTGTTGTTGGACTGCAGAAACCAACCGAGGT
CATCTCACCTACTCCACATGGCCCACCCCCCTCTCCACTCTGGTCTCTAC
TATTCCCCCTGCACCAACTCTACAACACTGTGTCCCTTCCCCTAACACCG
TCTCTTCTCCAGTCCTTGTTGAGGCACAGTTCGTGTTGGGGTCCATTATC
ACTTTTCTGCTACTAATATTTCGAAGTATACTTCCAGGATGCCCGTTGGC
ACCTGTCCCTTTACTGCAGCTTGTTCCCATCAGCAGTCCTACAGTTTCTA
GTGTGTCACTCTCCTTGCCCCCTCCTCAATATCCAACAAACACAGAAGCA
TCAGGATCAGGGTCACAATCGTTGCCCTTGCCCTCTCCATATTCTCCTTG
GTTTCTGTTCGCTGTGCTGTCAGTAGGCATTATGCTGTTTTGGGCAAGTG
AATCAATGTGTAGTCGTAAATGTAATCGGTGAACCTCAGTCATTGCCCCC
GGATGGCCTAGGGTTATTGCCCTTTGGTACATGGCAAGGGCTGCTGGTTG
GTTTCCCTGGGGGTGTAGCATGGGGGTTGAAGAGTCATTTGGTATTGTTT
CTTGGTATGGTGTAGCAGGCCCACCAACCAGTGGTGGTGTTGACTGATGA
TGTGGTGGTGATGGTGGTGAGGATTTGATCGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10927:3698..4581+

>mRNA_C-tenellus_contig10927.3.1 ID=mRNA_C-tenellus_contig10927.3.1|Name=mRNA_C-tenellus_contig10927.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=615bp|location=Sequence derived from alignment at C-tenellus_contig10927:3698..4581+ (Choristocarpus tenellus KU2346)
ATGGCCTGTACAGGGCTCCCAAGGTTGTCTTGGTGTGGCTTCATAGGAGA
TGGTGGTGCTGTCCCTATTGCCAGTGCTGCTGAATCGTGCACATTCATAC
TATTACATGGAGCATTCTGCCCAACGTATGATGAATGTCTTTGGCTGGTC
TCCTGTTGTTGGACTGCAGAAACCAACCGAGGTCATCTCACCTACTCCAC
ATGGCCCACCCCCCTCTCCACTCTGGTCTCTACTATTCCCCCTGCACCAA
CTCTACAACACTGTGTCCCTTCCCCTAACACCGTCTCTTCTCCAGTCCTT
GTTGAGGCACAGTTCGTGTTGGGGTCCATTATCACTTTTCTGCTACTAAT
ATTTCGAAGTATACTTCCAGGATGCCCGTTGGCACCTGTCCCTTTACTGC
AGCTTGTTCCCATCAGCAGTCCTACAGTTTCTAGTGTGTCACTCTCCTTG
CCCCCTCCTCAATATCCAACAAACACAGAAGCATCAGGATCAGGGTCACA
ATCGTTGCCCTTGCCCTCTCCATATTCTCCTTGGTTTCTGTTCGCTGTGC
TGTCAGTAGGCATTATGCTGTTTTGGGCAAGTGAATCAATGTGTAGTCGT
AAATGTAATCGGTGA
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