mRNA_C-tenellus_contig10925.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10925.2.1
Unique NamemRNA_C-tenellus_contig10925.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10925.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10925contigC-tenellus_contig10925:1850..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size582
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.927415-UTR-C-tenellus_contig10925:1849..19181680789154.927415-UTR-C-tenellus_contig10925:1849..1918Choristocarpus tenellus KU2346UTRC-tenellus_contig10925 1850..1918 +
1680789154.9531596-UTR-C-tenellus_contig10925:2332..24311680789154.9531596-UTR-C-tenellus_contig10925:2332..2431Choristocarpus tenellus KU2346UTRC-tenellus_contig10925 2333..2431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.9372923-CDS-C-tenellus_contig10925:1918..23321680789154.9372923-CDS-C-tenellus_contig10925:1918..2332Choristocarpus tenellus KU2346CDSC-tenellus_contig10925 1919..2332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10925.2.1prot_C-tenellus_contig10925.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10925 1919..2332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10925.2.1

>prot_C-tenellus_contig10925.2.1 ID=prot_C-tenellus_contig10925.2.1|Name=mRNA_C-tenellus_contig10925.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
MSRRKTRKRRRVEKDTVPPAPIYGVRSSPSTPCLSFSQPFTSLVLSGRKT
VDSRWGSCLHDLFRRKGETDVMVYCAYHDIATLGDIAGRKLSGEDMVDVY
NSIDNTPRCGEFNRNGYETREKAANKSSEPAAAVAPP*
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mRNA from alignment at C-tenellus_contig10925:1850..2431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10925.2.1 ID=mRNA_C-tenellus_contig10925.2.1|Name=mRNA_C-tenellus_contig10925.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=582bp|location=Sequence derived from alignment at C-tenellus_contig10925:1850..2431+ (Choristocarpus tenellus KU2346)
AACATAATCATCAATTCTCCAAATCGAAAATAATGGATAGTGAGAGTACC
ACGATACCTTGGTGGGGTGATGTCTCGTCGGAAGACACGCAAGCGTCGAC
GTGTGGAGAAAGATACAGTCCCGCCTGCGCCTATCTATGGCGTCCGAAGT
TCACCTTCAACTCCTTGCTTATCGTTCTCTCAGCCCTTCACTTCTCTCGT
GCTTTCTGGTCGAAAAACAGTTGACTCTCGATGGGGGTCTTGCTTGCACG
ATCTGTTCCGACGCAAGGGTGAGACCGATGTCATGGTATACTGTGCATAC
CATGACATAGCGACACTTGGAGATATTGCAGGGAGAAAGTTATCTGGAGA
GGACATGGTAGACGTATACAATAGCATCGACAACACTCCTCGTTGTGGTG
AGTTCAACCGTAATGGTTACGAAACACGTGAAAAAGCTGCAAACAAAAGC
AGTGAACCCGCCGCTGCCGTTGCACCGCCTTAACAGATTCGCCCGATAAC
CACACCCTCTTATGCGTTCTGTATTCTTTGGATAGCCTTGGTGGGAATTG
TGCGGGTGGTGGACAGCATGTTTGTTCCAGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10925:1850..2431+

>mRNA_C-tenellus_contig10925.2.1 ID=mRNA_C-tenellus_contig10925.2.1|Name=mRNA_C-tenellus_contig10925.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig10925:1850..2431+ (Choristocarpus tenellus KU2346)
ATGTCTCGTCGGAAGACACGCAAGCGTCGACGTGTGGAGAAAGATACAGT
CCCGCCTGCGCCTATCTATGGCGTCCGAAGTTCACCTTCAACTCCTTGCT
TATCGTTCTCTCAGCCCTTCACTTCTCTCGTGCTTTCTGGTCGAAAAACA
GTTGACTCTCGATGGGGGTCTTGCTTGCACGATCTGTTCCGACGCAAGGG
TGAGACCGATGTCATGGTATACTGTGCATACCATGACATAGCGACACTTG
GAGATATTGCAGGGAGAAAGTTATCTGGAGAGGACATGGTAGACGTATAC
AATAGCATCGACAACACTCCTCGTTGTGGTGAGTTCAACCGTAATGGTTA
CGAAACACGTGAAAAAGCTGCAAACAAAAGCAGTGAACCCGCCGCTGCCG
TTGCACCGCCTTAA
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