mRNA_C-tenellus_contig10898.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10898.3.1
Unique NamemRNA_C-tenellus_contig10898.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10898.3.1 vs. uniprot
Match: A0A835Z968_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z968_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.450e-8
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:  445 VEDIRGELLVKLREELDAYPSNLKQRAKASGHELTDPTLLRFLEMAYWTL----DAGGRPLIDAINQTISWRESFGAKDITP 678
            + D +   L +L+EE+DA P  L++ A+   HELT+ TLLRFLE++YW +    DAG R L+D I +T+ WR+  GA  + P
Sbjct:   90 MNDQKWAALRQLKEEVDARPE-LRRHAREVQHELTELTLLRFLEVSYWRVEKDGDAGPR-LVDVIARTVEWRDQMGAVAMAP 169
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10898.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z968_9STRA3.450e-843.90CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10898contigC-tenellus_contig10898:3246..5238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQH2
PFAMsCRAL_TRIO,HLH
Model size686
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue3.96e-06
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota
Descriptionintermembrane phospholipid transfer
Cds size660
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.7631688-UTR-C-tenellus_contig10898:3245..32691680789153.7631688-UTR-C-tenellus_contig10898:3245..3269Choristocarpus tenellus KU2346UTRC-tenellus_contig10898 3246..3269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.7768762-CDS-C-tenellus_contig10898:3269..35091680789153.7768762-CDS-C-tenellus_contig10898:3269..3509Choristocarpus tenellus KU2346CDSC-tenellus_contig10898 3270..3509 +
1680789153.7901294-CDS-C-tenellus_contig10898:3791..40931680789153.7901294-CDS-C-tenellus_contig10898:3791..4093Choristocarpus tenellus KU2346CDSC-tenellus_contig10898 3792..4093 +
1680789153.7998827-CDS-C-tenellus_contig10898:5120..52381680789153.7998827-CDS-C-tenellus_contig10898:5120..5238Choristocarpus tenellus KU2346CDSC-tenellus_contig10898 5121..5238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10898.3.1prot_C-tenellus_contig10898.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10898 3270..5238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10898.3.1

>prot_C-tenellus_contig10898.3.1 ID=prot_C-tenellus_contig10898.3.1|Name=mRNA_C-tenellus_contig10898.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=220bp
MCQGGTALQGTAAKPDDKPNGSHAVEKLPSGRRSKKVLICLSLCLGFCLH
VFVKGAVWWSARDNTCGRNNVQQQEAEDFPEGDMVKHDRRVTLRDRVANL
FRKNGRERRDSKGADAQERLGEESGKGRFAFGHKKRKVGTVEDIRGELLV
KLREELDAYPSNLKQRAKASGHELTDPTLLRFLEMAYWTLDAGGRPLIDA
INQTISWRESFGAKDITPEQ
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mRNA from alignment at C-tenellus_contig10898:3246..5238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10898.3.1 ID=mRNA_C-tenellus_contig10898.3.1|Name=mRNA_C-tenellus_contig10898.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1993bp|location=Sequence derived from alignment at C-tenellus_contig10898:3246..5238+ (Choristocarpus tenellus KU2346)
GTGTCCTTAATCAACCCTGAGGAAATGTGCCAAGGGGGCACAGCTCTTCA
AGGGACTGCAGCCAAGCCAGACGATAAGCCCAATGGATCTCATGCTGTAG
AGAAGCTCCCTTCTGGTCGACGTTCGAAGAAGGTTTTGATTTGCTTGAGT
TTGTGTCTGGGGTTTTGCCTACACGTCTTTGTGAAGGGGGCCGTTTGGTG
GAGTGCACGTGACAATACTTGTGGGAGGAACAATGTCCAACAGCAAGAGG
CCGAAGATTTTCCGGTGGGTCCTTCATGAGGCAGGGGAGAGGGGGGTCTA
CACTTCCCGTACTTCACTCTTCACTATGATCCTCACTTACACGGTTCTTC
TGTGCTTGCTATTGACTCCGTCGCATTGGTACTGACCTTCGAAATTGATG
CGTTCTGGGGACAATGGTGAAGTTCTGTGCTTAGCCCGCTCCTTTCTACT
ATTCTTTGTACAATATGCTTCGCCTGAGCTCTACTCCACCACGATTACAG
TCTGCTACAACGTTCCATTGCTGTACCATCACCAACCCCTTGCTAGGAAG
GGGACATGGTGAAGCACGACCGACGTGTAACGTTACGTGACCGTGTGGCT
AACCTTTTCCGAAAAAATGGAAGAGAGAGGCGTGATTCCAAGGGAGCCGA
TGCCCAAGAACGTCTGGGTGAGGAGTCGGGAAAGGGTCGATTTGCATTTG
GTCACAAGAAGAGGAAAGTCGGGACAGTGGAGGATATCCGTGGGGAGTTG
CTGGTGAAGCTCAGGGAAGAGCTAGATGCTTATCCAAGTAATCTGAAGCA
ACGGGCCAAGGCATCTGGTCACGAGTTGACTGACCCGACCCTCCTCAGGT
ATCTACAGTGCACTTGGGAGGCGGGATGCACGGACATACCTAATATTACT
CATTTCTTTGCATGAATCCGCCACACAACACACAGGCGCGCGGTTCTTGC
TTTAACTGATAAGGACTTCATTGGTGCTGCTACAAAGCAATCAATAGGAT
AACTATTCGTGCCATCTACATGCATACTGTTGTAGGACCTACATTCGATT
GTAGAAAATGATGACCCCCCCACAATACAATTTTGAACGAATTTTTGACC
AACGATCCCCCTCTCGGTAACCGACCCCACTCTGGTCCATGAGATGATGA
AATCTACGCCAATAAGAAACTGGGTGGATAAGGTGGGGTTCAATGGGAAT
GTACTTCAATATCCCATGGTGAAAGCGGGCTGAGACGTTGGCATCTCACC
CACCCAATCTTTTTAGTCATCACACTCAAGGTTTAGGGGCAGGCATGTCA
TCCTCTGTCCCTGGTTGCTGTTCAGTTTTTAAGGAGTTACGTAAGGGAGG
TCGGCACATCACAGTTCTTGTCCTTTATTTTTCATGGGGGGTAGGCATGT
ACGTTTTTATTATCCTGCTAGAAGTACGTGCTACCCCCAACCTAACCCTA
ACCCTTGTACAGTATACTGGTGATGGCATCAAAAATTTTCATCATCCAAG
TGATAAAACCCGACCCAAAGGGGACCCACTCCTCAAGTCATCCTAACCTC
GTATCCCCATGATGTGCCATACAGACACCTCCCCCAAACATTCCCGACTA
CTTGAAATAGGGAAAGCGCTTTTTAAAACAAACTGCACCATTCTAGTCAC
AACAGCAATAACATTTGTCAAGCGTGTCTAATCACCAATTGCCGTTTCAT
TTACCAAGCGGTTGCAAATTTTTTGAACCCCAAAAAACATAGCAAATCGC
ACGCGAGCTCAGTAACACCTTCTCACTCGAGACACTATACAGAGGGGAAA
AGAAAAAAAAAGAAGGTAAAAAAAAAAAACACAATTTTCCTGCGCGCTGC
ACAACTATACTGTTTTGGGGGTTAGATTTTTGGAGATGGCGTACTGGACG
CTTGATGCAGGGGGGAGGCCACTCATAGATGCGATCAATCAGACGATAAG
TTGGAGAGAGAGCTTCGGGGCAAAGGATATCACGCCAGAGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10898:3246..5238+

>mRNA_C-tenellus_contig10898.3.1 ID=mRNA_C-tenellus_contig10898.3.1|Name=mRNA_C-tenellus_contig10898.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=660bp|location=Sequence derived from alignment at C-tenellus_contig10898:3246..5238+ (Choristocarpus tenellus KU2346)
ATGTGCCAAGGGGGCACAGCTCTTCAAGGGACTGCAGCCAAGCCAGACGA
TAAGCCCAATGGATCTCATGCTGTAGAGAAGCTCCCTTCTGGTCGACGTT
CGAAGAAGGTTTTGATTTGCTTGAGTTTGTGTCTGGGGTTTTGCCTACAC
GTCTTTGTGAAGGGGGCCGTTTGGTGGAGTGCACGTGACAATACTTGTGG
GAGGAACAATGTCCAACAGCAAGAGGCCGAAGATTTTCCGGAAGGGGACA
TGGTGAAGCACGACCGACGTGTAACGTTACGTGACCGTGTGGCTAACCTT
TTCCGAAAAAATGGAAGAGAGAGGCGTGATTCCAAGGGAGCCGATGCCCA
AGAACGTCTGGGTGAGGAGTCGGGAAAGGGTCGATTTGCATTTGGTCACA
AGAAGAGGAAAGTCGGGACAGTGGAGGATATCCGTGGGGAGTTGCTGGTG
AAGCTCAGGGAAGAGCTAGATGCTTATCCAAGTAATCTGAAGCAACGGGC
CAAGGCATCTGGTCACGAGTTGACTGACCCGACCCTCCTCAGATTTTTGG
AGATGGCGTACTGGACGCTTGATGCAGGGGGGAGGCCACTCATAGATGCG
ATCAATCAGACGATAAGTTGGAGAGAGAGCTTCGGGGCAAAGGATATCAC
GCCAGAGCAG
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