mRNA_C-tenellus_contig10879.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10879.2.1
Unique NamemRNA_C-tenellus_contig10879.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10879.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10879contigC-tenellus_contig10879:2878..4849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIG8
Model size612
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.21e-43
EggNOG OGs2BVH8@1|root,2S296@2759|Eukaryota
Cds size594
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10879.2.1prot_C-tenellus_contig10879.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10879 2896..4849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.806136-UTR-C-tenellus_contig10879:2877..28951680789152.806136-UTR-C-tenellus_contig10879:2877..2895Choristocarpus tenellus KU2346UTRC-tenellus_contig10879 2878..2895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.818434-CDS-C-tenellus_contig10879:2895..30661680789152.818434-CDS-C-tenellus_contig10879:2895..3066Choristocarpus tenellus KU2346CDSC-tenellus_contig10879 2896..3066 +
1680789152.8291352-CDS-C-tenellus_contig10879:3459..35681680789152.8291352-CDS-C-tenellus_contig10879:3459..3568Choristocarpus tenellus KU2346CDSC-tenellus_contig10879 3460..3568 +
1680789152.8415754-CDS-C-tenellus_contig10879:4164..42801680789152.8415754-CDS-C-tenellus_contig10879:4164..4280Choristocarpus tenellus KU2346CDSC-tenellus_contig10879 4165..4280 +
1680789152.8555875-CDS-C-tenellus_contig10879:4585..46721680789152.8555875-CDS-C-tenellus_contig10879:4585..4672Choristocarpus tenellus KU2346CDSC-tenellus_contig10879 4586..4672 +
1680789152.8661993-CDS-C-tenellus_contig10879:4738..48491680789152.8661993-CDS-C-tenellus_contig10879:4738..4849Choristocarpus tenellus KU2346CDSC-tenellus_contig10879 4739..4849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10879.2.1

>prot_C-tenellus_contig10879.2.1 ID=prot_C-tenellus_contig10879.2.1|Name=mRNA_C-tenellus_contig10879.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=198bp
MLRTRHRTEIGRGRPLVGWDISSFAEFAFVKLGLVEDETAEAVEVLIFAA
DKHHAGEVTLSEFELLFCNGVSAATTRRKARALLIEASAHEKTGNLKAAE
AKCEASIEVWPACAEAHLNLARLLRAGGASVQRAITKVETHLRQAVACAS
PSPLGNEGGGEVEEAAASLLSLLLCQEGRDAEVAILLKDRGLRYSVL*
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mRNA from alignment at C-tenellus_contig10879:2878..4849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10879.2.1 ID=mRNA_C-tenellus_contig10879.2.1|Name=mRNA_C-tenellus_contig10879.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1972bp|location=Sequence derived from alignment at C-tenellus_contig10879:2878..4849+ (Choristocarpus tenellus KU2346)
CTTTCTCGAGCATTGGACATGTTACGAACCAGGCACAGGACTGAGATTGG
GCGGGGCCGACCGTTAGTTGGGTGGGATATATCATCCTTCGCGGAGTTTG
CCTTCGTGAAGCTTGGTTTGGTGGAGGACGAGACTGCAGAGGCGGTCGAG
GTCTTGATTTTTGCTGCAGACAAGCATCATGCAGGCGAGGTGAGCCGAGT
GGGTGTGATGCCTCGATAAACATGGTCAGGATAAGCCTGCTTGTCCCTAG
TGTACGTTTCCACGCGTGATCTACTATGTGACTGGGACTTGGACTGCACC
GAGAGCCCAGTGTGCGAGTGTGTTTCTTGGGTGCGACCTTCAGCCAGTCC
CAAAGACCTTTTCGAACCTGCGACTCGTTACGCCACAACTGATCTACACA
CGCGCAATTGGCAATTTCTCGCATTCCTCCATTATTATACAATCATTTAT
TTTCCCCATTTGAGCCCGTTTATCGGTTGCCCCTTCCTTCGAACCCTGCG
GCTTACCTAGTGGTTTCAACTTCCACTATCTTGACCCTCCCTCCCGCACA
CACGTGTGTACCATACCACCAATGTTCTGCAGGTGACACTCTCAGAGTTC
GAATTGCTCTTTTGCAACGGGGTATCTGCTGCAACTACACGAAGAAAAGC
ACGGGCATTGCTGATAGAGGCGTCAGCACATGAGAAAACAGGTGTGAGAC
TAGATGGAGAGGGTGGTGTTGAACCTTGTAGTGGTTTATATTTCTGAGAG
TTGTCTTTGCCTTTTAGTAGCTGCCTCCAACCTTAAACAGAGGAGAGAGA
GAACGAGTATGAGAGTGTGATAACAGTAGAATCAACAAAGAGGCTTGGTA
CATTGCTGGCTCTTTCCTGTAGATCGTGTATTTCAATACCTAACCTGATG
TTGGCAATATGCCACTGCTACCTTGTCCATGCCAATTTTGCCAATTGGAA
CATGCCAAGCACATCAGACTATGTGTTTGCATGCAGGTGTGTGTACAAGT
GCATTGTTGTATGTGGGCGCCCATGCAAGAAAGAAGGAGGAGCTTGAGGC
ATGGTCTTTTGACAGATTGCTGGCAACAGTTGAGGGAGGATAGCTATGTG
GAGACTTGAATATAGGTCAAATGCAGGGGTTAAGGATGAGACAATATGTT
AGGGATAAGTTATACCTTGAACCATCTTTTGTGGAGAAACCTAGAAGTGA
TTTCCTCCCTCAGACAAGCAATGAAAGCCACTTGCTCAGTTCAAGTCTAA
CCCCTTTCCCATTCTTTCACCCCCTCGTGTTTTGGAGGCAATCTCAAGGC
GGCGGAGGCCAAGTGTGAAGCAAGCATTGAAGTGTGGCCTGCATGTGCCG
AGGCCCACCTCAACCTTGCCCGTCTTCTGAGAGCAGGGGGGGCTTCTGTC
CAAGTGTGTGTGTATGTGTGTGTCAGCCGTTGTCGCCATTGCATTTTTAT
GCACCCAACCATGAATAAAAAGCTCGCGTGCCTTGCCTCATCCCTTTCAA
GTTTGTTTTTTAAACAGGGTATTGCATGTGCCGAAGGAGGTACAGAACAA
CCTCCCGATTTCTTATTGCATACAACTTTTTCATGCGTTGATTACCTCCA
TATATAGCAACTGTTTTGGATGACAGATGGACACGCCTCTTTACACTCAC
CCCTGCAATCCATTCTGTTCCCCTTACCCTCTTCTACCTCTTTCCTGCAC
CACGCCAGCGGGCAATAACCAAGGTTGAAACACACCTCAGGCAGGCGGTG
GCATGTGCATCCCCCTCCCCATTGGGCAACGAAGGCGGTGGGGAAGTCTC
CGGTGGAGGTATGAGCTTGGTTGCAAGCAAGGCAGGGGTCGGGGGAATTC
CACACCCAGAGGTGGAGGAGGCTGCGGCATCACTTCTCTCCCTGTTGCTC
TGTCAGGAGGGGAGAGATGCAGAGGTGGCAATCCTTCTCAAGGACCGAGG
GCTCAGGTATAGTGTTCTGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10879:2878..4849+

>mRNA_C-tenellus_contig10879.2.1 ID=mRNA_C-tenellus_contig10879.2.1|Name=mRNA_C-tenellus_contig10879.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=594bp|location=Sequence derived from alignment at C-tenellus_contig10879:2878..4849+ (Choristocarpus tenellus KU2346)
ATGTTACGAACCAGGCACAGGACTGAGATTGGGCGGGGCCGACCGTTAGT
TGGGTGGGATATATCATCCTTCGCGGAGTTTGCCTTCGTGAAGCTTGGTT
TGGTGGAGGACGAGACTGCAGAGGCGGTCGAGGTCTTGATTTTTGCTGCA
GACAAGCATCATGCAGGCGAGGTGACACTCTCAGAGTTCGAATTGCTCTT
TTGCAACGGGGTATCTGCTGCAACTACACGAAGAAAAGCACGGGCATTGC
TGATAGAGGCGTCAGCACATGAGAAAACAGGCAATCTCAAGGCGGCGGAG
GCCAAGTGTGAAGCAAGCATTGAAGTGTGGCCTGCATGTGCCGAGGCCCA
CCTCAACCTTGCCCGTCTTCTGAGAGCAGGGGGGGCTTCTGTCCAACGGG
CAATAACCAAGGTTGAAACACACCTCAGGCAGGCGGTGGCATGTGCATCC
CCCTCCCCATTGGGCAACGAAGGCGGTGGGGAAGTGGAGGAGGCTGCGGC
ATCACTTCTCTCCCTGTTGCTCTGTCAGGAGGGGAGAGATGCAGAGGTGG
CAATCCTTCTCAAGGACCGAGGGCTCAGGTATAGTGTTCTGTAG
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