mRNA_C-tenellus_contig1083.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1083.3.1
Unique NamemRNA_C-tenellus_contig1083.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   25 SSELKFIYTVQRGDNASQLTADTGALVSNTY---SGGGSMFIDLLGRDVNTTLPIPG--SSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            S E+ F+YTV+ GD ++    ++  L +  +    GG +  +DLLGR+ N TLP  G  S  SLSG SS T++   P V+ +GSSL GGEYGVGQ
Sbjct:  465 SDEITFVYTVELGDQSTDGVGNSAVLEAEGHYAVRGGDAPLVDLLGREANATLPGVGVWSDVSLSGASSLTIEATEPVVVAVGSSLDGGEYGVGQ 559          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A6H5L133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L133_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.550e-13
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   25 SSELKFIYTVQRGDNASQLTADTGALVSNTY---SGGGSMFIDLLGRDVNTTLPIPG--SSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            S E+ F+YTV+ GD ++    ++  L +  +    GG +  +DLLGR+ N TLP  G  S  SLSG SS T++   P V+ +GSSL GGEYGVGQ
Sbjct:  457 SDEITFVYTVELGDQSTDGVGNSVVLEAEGHYAVRGGDAPLVDLLGREANATLPGVGVWSDVSLSGASSLTIEATEPVVVAVGSSLRGGEYGVGQ 551          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A7Z9Q5T3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9Q5T3_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.340e-7
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   52 VQRGDNASQLTADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            V+ G N + L   +GAL   T        I     DVN TLP+PGS+NSL+GK +  +DT AP V  + S+   G YG G+
Sbjct:    1 VEAGQNIADLDNASGALSGGT--------IKSFNTDVNLTLPVPGSANSLAGKKNLVIDTTAPTVNSVSSTKTDGTYGPGE 73          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A2M9ZNR6_9LEPT (Uncharacterized protein n=1 Tax=Leptospira perolatii TaxID=2023191 RepID=A0A2M9ZNR6_9LEPT)

HSP 1 Score: 57.8 bits (138), Expect = 1.400e-7
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   34 LKFIYTVQRGDNASQLTADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            L F YTV  G++ + L   +     + +S  G    +  G D++ TLP PG++ SL      T+DT AP V  +G+SL  G YGVGQ
Sbjct:  123 LSFSYTVSGGEDVADLDYSS----VSAFSLNGGSIKNSSGSDLSITLPTPGAAGSLGASKDLTIDTIAPSVFLVGTSLANGTYGVGQ 205          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A2E4WIC0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E4WIC0_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 3.180e-6
Identity = 34/88 (38.64%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   34 LKFIYTVQRGDNASQLT-ADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            + F YTV+ G NA+ L  A T +L  N         I     D +  LPIPG  NSL+G+ +  VDT+AP V  + S+   G YG G+
Sbjct:  444 MTFHYTVEAGHNAAALDIASTTSLTGN---------IKNFNLDADLALPIPGDPNSLAGRKTLIVDTEAPVVNSVSSTKADGIYGPGE 522          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: UPI001FB28EF6 (cell wall anchor protein n=1 Tax=Bdellovibrio sp. LBG001 TaxID=2835041 RepID=UPI001FB28EF6)

HSP 1 Score: 53.5 bits (127), Expect = 4.340e-6
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   25 SSELKFIYTVQRGDNASQLTADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGG 276
            S+ L F YTVQ GDN+S L  ++    +N+ S  GS   D  G D+  TLP PG++ SL    +  +DT AP    + S + GG
Sbjct:  735 SNTLIFNYTVQAGDNSSDLDYES----ANSLSLNGSTIKDSFGNDMILTLPAPGATGSLGANKNIVIDTQAPDAFSI-SGVTGG 813          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A1C0VUR0_9CYAN (DUF4347 domain-containing protein n=1 Tax=Oscillatoriales cyanobacterium USR001 TaxID=1880991 RepID=A0A1C0VUR0_9CYAN)

HSP 1 Score: 52.4 bits (124), Expect = 1.100e-5
Identity = 35/98 (35.71%), Postives = 47/98 (47.96%), Query Frame = 1
Query:    4 NSTSNTTSSELKFIYTVQRGDNASQLT-ADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            N TS   ++ L F YTV  GD ++ L    T AL  N     G    D    +   TLP P ++NSL    +  +DT AP +  + S+L  G Y VGQ
Sbjct:  949 NYTSGNGTNTLTFEYTVAAGDTSTDLDYLSTAALALN-----GGTIKDAATNNATLTLPAPAAANSLGANKALVIDTTAPTITSITSTLTDGTYSVGQ 1041          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A2U1X2L7_9PROT (Cadherin domain-containing protein (Fragment) n=2 Tax=Azospirillum TaxID=191 RepID=A0A2U1X2L7_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-5
Identity = 36/88 (40.91%), Postives = 45/88 (51.14%), Query Frame = 1
Query:   34 LKFIYTVQRGDNASQLT-ADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            L F YTVQ GDNA+ L  A TGAL  N    GG +       D   TL  PG++NSL    +  +DT AP V  +  S + G Y  G+
Sbjct: 2664 LSFTYTVQDGDNATDLDYASTGALTLN----GGGIADSSTSLDAILTLATPGAANSLGANKAIVIDTAAPTVSAV--SAVNGTYRAGE 2745          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: A0A6B8QP83_9GAMM (Cadherin domain-containing protein n=1 Tax=Halomonas sp. PA16-9 TaxID=2576841 RepID=A0A6B8QP83_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.470e-5
Identity = 30/75 (40.00%), Postives = 39/75 (52.00%), Query Frame = 1
Query:   31 ELKFIYTVQRGDNASQLTADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGL 255
            EL F YTVQ GD +S L      ++ N    GGS+  D  G D   TLP PG++NSLS      +D  AP +  +
Sbjct:  178 ELTFAYTVQAGDESSDLALTNAGIILN----GGSIR-DAAGNDSELTLPTPGTANSLSANKDIVIDAVAPVITSV 247          
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Match: UPI001FE9A72C (DUF4347 domain-containing protein n=1 Tax=Microcoleus asticus TaxID=2815231 RepID=UPI001FE9A72C)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5
Identity = 33/87 (37.93%), Postives = 44/87 (50.57%), Query Frame = 1
Query:   34 LKFIYTVQRGDNASQLTADTGALVSNTYSGGGSMFIDLLGRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ 294
            L F Y V  GD++    AD   L +   S GG +  +    D   TLP PG++NSL    +  +DT AP V  + S+L  G Y VGQ
Sbjct:  724 LTFRYAVAAGDSS----ADLDYLSTTALSLGGGIVKNAATADAILTLPTPGAANSLGANKAIVIDTLAPTVTSITSTLTDGTYTVGQ 806          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1083.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ0_ECTSI1.150e-1345.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L133_9PHAE1.550e-1345.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7Z9Q5T3_9BACT1.340e-740.74Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A2M9ZNR6_9LEPT1.400e-737.93Uncharacterized protein n=1 Tax=Leptospira perolat... [more]
A0A2E4WIC0_9BACT3.180e-638.64Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]
UPI001FB28EF64.340e-639.29cell wall anchor protein n=1 Tax=Bdellovibrio sp. ... [more]
A0A1C0VUR0_9CYAN1.100e-535.71DUF4347 domain-containing protein n=1 Tax=Oscillat... [more]
A0A2U1X2L7_9PROT1.110e-540.91Cadherin domain-containing protein (Fragment) n=2 ... [more]
A0A6B8QP83_9GAMM1.470e-540.00Cadherin domain-containing protein n=1 Tax=Halomon... [more]
UPI001FE9A72C1.490e-537.93DUF4347 domain-containing protein n=1 Tax=Microcol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1083contigC-tenellus_contig1083:12894..13187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJQ0
PFAMsCalx-beta,FG-GAP_2
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.89e-14
EggNOG OGs28JEB@1|root,2QRTB@2759|Eukaryota
DescriptionFG-GAP repeat
Cds size294
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.9058404-CDS-C-tenellus_contig1083:12893..131871680789150.9058404-CDS-C-tenellus_contig1083:12893..13187Choristocarpus tenellus KU2346CDSC-tenellus_contig1083 12894..13187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1083.3.1prot_C-tenellus_contig1083.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1083 12894..13187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1083.3.1

>prot_C-tenellus_contig1083.3.1 ID=prot_C-tenellus_contig1083.3.1|Name=mRNA_C-tenellus_contig1083.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
ANSTSNTTSSELKFIYTVQRGDNASQLTADTGALVSNTYSGGGSMFIDLL
GRDVNTTLPIPGSSNSLSGKSSFTVDTDAPYVIGLGSSLLGGEYGVGQ
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mRNA from alignment at C-tenellus_contig1083:12894..13187-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1083.3.1 ID=mRNA_C-tenellus_contig1083.3.1|Name=mRNA_C-tenellus_contig1083.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=294bp|location=Sequence derived from alignment at C-tenellus_contig1083:12894..13187- (Choristocarpus tenellus KU2346)
GCGAACTCTACTTCCAATACTACTTCCTCGGAGCTCAAATTTATATACAC TGTACAGCGTGGTGACAATGCTTCGCAGCTGACAGCTGACACAGGAGCAC TGGTGTCCAATACCTACAGTGGGGGAGGAAGCATGTTTATCGACTTATTA GGAAGGGATGTCAACACCACCTTACCCATACCAGGCAGTAGTAACAGCCT CTCTGGAAAATCGTCTTTTACAGTGGACACAGACGCGCCATATGTGATTG GCTTGGGGAGCTCACTTTTGGGAGGGGAGTATGGAGTGGGGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1083:12894..13187-

>mRNA_C-tenellus_contig1083.3.1 ID=mRNA_C-tenellus_contig1083.3.1|Name=mRNA_C-tenellus_contig1083.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig1083:12894..13187- (Choristocarpus tenellus KU2346)
GCGAACTCTACTTCCAATACTACTTCCTCGGAGCTCAAATTTATATACAC
TGTACAGCGTGGTGACAATGCTTCGCAGCTGACAGCTGACACAGGAGCAC
TGGTGTCCAATACCTACAGTGGGGGAGGAAGCATGTTTATCGACTTATTA
GGAAGGGATGTCAACACCACCTTACCCATACCAGGCAGTAGTAACAGCCT
CTCTGGAAAATCGTCTTTTACAGTGGACACAGACGCGCCATATGTGATTG
GCTTGGGGAGCTCACTTTTGGGAGGGGAGTATGGAGTGGGGCAG
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