mRNA_C-tenellus_contig10826.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10826.3.1
Unique NamemRNA_C-tenellus_contig10826.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: D8LR97_ECTSI (DIX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR97_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 8.390e-34
Identity = 60/83 (72.29%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:  419 RYFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLS 667
            RYFIP+DGDDP HPNVFQL S  V +G+VR  D++  FPLPG YHFRFKKKFRD FVWVDI+D  A VPS DGV+TAKI RLS
Sbjct:    3 RYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRYHFRFKKKFRDAFVWVDIADPGAAVPSCDGVFTAKITRLS 85
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: A0A836CD85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD85_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.180e-24
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 2 
Query:  419 RYFIPSDGDDPEHPNVFQLHSSSVA--NGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVW 592
            RYFIPSDGDD +HPNVFQL SS+V+  NGT+R  D+   FPLPG+YHFRFKKKFRDGFVW
Sbjct:    3 RYFIPSDGDDADHPNVFQLPSSAVSGGNGTLRLGDVMRHFPLPGTYHFRFKKKFRDGFVW 62
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: A0A2R5GFE7_9STRA (DIX domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFE7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.160e-22
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 2 
Query:  422 YFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLSAPEGATAWVGGQG 706
            YF+P DGDD  HPN F L   +     VR +D++A FPLPG+YH RFKK F++ +VW+D+ D   +VP ++G   AKI RLSA  GA    G  G
Sbjct:    8 YFVPEDGDDEAHPNFFSLSKPAAK---VRAADVRAAFPLPGAYHLRFKKAFKNTYVWLDVVDDGQIVPRFEGQIFAKISRLSAQHGAAGAAGQMG 99
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: A0A7S2RG08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG08_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.500e-19
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 2 
Query:  422 YFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLSA 670
            YF+P DGD+ +HPNVF +   S  +  VR  D++  FPLPG YHFRFKK F++ FVW+DI D   VVP ++G   AK+ R SA
Sbjct:    8 YFVPEDGDEEDHPNVFTI---SRPSSKVRLGDVKKTFPLPGRYHFRFKKAFKNTFVWLDILDDYDVVPRFEGQLVAKVSRTSA 87
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: UPI0007114B76 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007114B76)

HSP 1 Score: 91.7 bits (226), Expect = 2.130e-18
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  419 RYFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLSA 670
            +Y+IP DGDD +HPNV+ +   S    T+  +DI+  FP+PG+Y+FRFK+ F+  ++W D+S    VVPS+DG    K+ RL A
Sbjct:    8 QYYIPEDGDDMDHPNVYSIDKKST---TITVTDIRNSFPIPGTYYFRFKRAFKKTWIWFDVSKDDEVVPSFDGTIMMKVTRLPA 88
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: D8M8I1_BLAHO (DIX domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M8I1_BLAHO)

HSP 1 Score: 87.0 bits (214), Expect = 8.450e-17
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  422 YFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLSA 670
            Y+IP DGD+ +HPNV  L  ++     V   DI+  FP+PG+Y+FRFK+ F++ ++W D+++ S VVP +DG+   K  RL A
Sbjct:    9 YYIPEDGDEADHPNVMTLDKNA---SQVTLKDIREAFPIPGTYYFRFKRTFKNSWIWFDVTEDSEVVPKFDGLIFVKATRLPA 88
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: A0A7S1AV14_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AV14_NOCSC)

HSP 1 Score: 86.3 bits (212), Expect = 3.790e-16
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 2 
Query:  410 LLRRYFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGF-VWVDISDGSAVVPSYDGVYTAKIVRLS 667
            +L  Y IP DGDD + PNVF + + S   G +   DI+ +FPLPG+YHFRFK K+ D   VW+D+++  + VP +DG   AK++RLS
Sbjct:   35 ILIFYHIPGDGDDADTPNVFPVVTPS---GAILLQDIRCKFPLPGTYHFRFKMKWGDSTSVWMDVTNEKSQVPMHDGKIVAKVIRLS 118
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: A0A7J6P449_PEROL (DIX domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P449_PEROL)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:  422 YFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLSAPEGA 682
            Y+IPSD D+  HPN F +     A   +R  DI+ +FPLPG+YHFRFK K+  G VW+D+++    VP Y+    AK++R+S  EGA
Sbjct:  305 YYIPSDKDEVGHPNAFPIPKPPEA---IRLRDIREKFPLPGTYHFRFKLKYDTGSVWIDVTNDDVPVPIYNNKIVAKVLRISWKEGA 388
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: A0A7S1FKA8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FKA8_NOCSC)

HSP 1 Score: 82.8 bits (203), Expect = 1.630e-15
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 2 
Query:  422 YFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRLSAPEGATA 688
            Y++P D DD +HPN F +  +      V+  DI+A+FPLPG+YHFRFK K+    +W+D+++  + VP +D    AK++RL+  +G  A
Sbjct:   13 YWLPGDNDDADHPNAFTVMRTG---SWVKLRDIKAKFPLPGTYHFRFKMKWDANAIWMDVTNEDSAVPLFDDKIFAKVLRLTWDDGREA 98
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BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Match: F0WJK9_9STRA (Uncharacterized protein AlNc14C123G6734 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJK9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-15
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  422 YFIPSDGDDPEHPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDISDGSAVVPSYDGVYTAKIVRL 664
            YFIP DGD  +H NV  L     A   +    ++  FPLPG +HFRFK +F   +VW+D++DG+ VVPSYDG+  +KI R+
Sbjct:    7 YFIPEDGDTSDHMNVVPL----PAVDQLTLKHVKENFPLPGDFHFRFKTQFEGTYVWLDLTDGNDVVPSYDGIIVSKISRI 83
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10826.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR97_ECTSI8.390e-3472.29DIX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CD85_9STRA4.180e-2475.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2R5GFE7_9STRA8.160e-2248.42DIX domain-containing protein n=1 Tax=Hondaea ferm... [more]
A0A7S2RG08_9STRA2.500e-1951.81Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI0007114B762.130e-1845.24hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
D8M8I1_BLAHO8.450e-1743.37DIX domain-containing protein n=1 Tax=Blastocystis... [more]
A0A7S1AV14_NOCSC3.790e-1647.13Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7J6P449_PEROL1.130e-1545.98DIX domain-containing protein n=1 Tax=Perkinsus ol... [more]
A0A7S1FKA8_NOCSC1.630e-1540.45Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
F0WJK9_9STRA2.000e-1546.91Uncharacterized protein AlNc14C123G6734 n=1 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10826contigC-tenellus_contig10826:3092..5424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LR97
PFAMsDIX
Model size1009
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.94e-36
EggNOG OGs2AQHG@1|root,2RZJ0@2759|Eukaryota
Ec32 ortholog descriptionDIX domain protein
Ec32 orthologEc-06_003340.1
DescriptionApicomplexan specific region near N-terminus. Source PGD
Cds size705
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.659507-UTR-C-tenellus_contig10826:3091..33951680789150.659507-UTR-C-tenellus_contig10826:3091..3395Choristocarpus tenellus KU2346UTRC-tenellus_contig10826 3092..3395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.6769571-CDS-C-tenellus_contig10826:3395..36781680789150.6769571-CDS-C-tenellus_contig10826:3395..3678Choristocarpus tenellus KU2346CDSC-tenellus_contig10826 3396..3678 +
1680789150.6871192-CDS-C-tenellus_contig10826:3897..40981680789150.6871192-CDS-C-tenellus_contig10826:3897..4098Choristocarpus tenellus KU2346CDSC-tenellus_contig10826 3898..4098 +
1680789150.702208-CDS-C-tenellus_contig10826:4595..46781680789150.702208-CDS-C-tenellus_contig10826:4595..4678Choristocarpus tenellus KU2346CDSC-tenellus_contig10826 4596..4678 +
1680789150.714563-CDS-C-tenellus_contig10826:5286..54241680789150.714563-CDS-C-tenellus_contig10826:5286..5424Choristocarpus tenellus KU2346CDSC-tenellus_contig10826 5287..5424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10826.3.1prot_C-tenellus_contig10826.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10826 3396..5424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10826.3.1

>prot_C-tenellus_contig10826.3.1 ID=prot_C-tenellus_contig10826.3.1|Name=mRNA_C-tenellus_contig10826.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=235bp
MQCLLVSINIISGSFTACPNSGFADPEILAFSTCALLRRYFIPSDGDDPE
HPNVFQLHSSSVANGTVRFSDIQARFPLPGSYHFRFKKKFRDGFVWVDIS
DGSAVVPSYDGVYTAKIVRLSAPEGATAWVGGQGGRVDTASMGSVKGQGI
GGGGGSVGGGPGLGSDDLLNMSSGGGAPVTPRANQGVSQQPDDLLGMMGV
FDSSHPTTRTSASPSLGQQSPRMPGTPGVAGGQQP
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mRNA from alignment at C-tenellus_contig10826:3092..5424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10826.3.1 ID=mRNA_C-tenellus_contig10826.3.1|Name=mRNA_C-tenellus_contig10826.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2333bp|location=Sequence derived from alignment at C-tenellus_contig10826:3092..5424+ (Choristocarpus tenellus KU2346)
TAGTCGCTTAAGAGACGAGACTTGCAAACGATTTATGGAAGGCGGAGGAG
CAAATCGGAGCCAGTGGGGGTGATATGATCAGGTGCAGAACTAAGCAGAG
TGCTAAATGACCGAAATTGACGTTTTATTCTGAGTCCCATGGGATATCCT
TCTCCAAACCCACTACCTCCATGTAAACCCTCCGCTTGCTTCCGTCATCC
AACACGACATCGAATACATCTCTGTCGTTCCGCCTCGAGAGTGGTAATGT
TTCCCGGCGAGCCAGTGTACGTTATCGGAATGGCTTTCTCTACCTGGTAA
AGGAATGCAGTGTCTGCTGGTATCTATCAACATTATTAGTGGTTCATTTA
CTGCCTGTCCTAACTCAGGATTTGCCGATCCAGAGATTCTTGCCTTTTCA
ACCTGTGCTCTTCTGCGTAGGTATTTTATTCCCAGCGATGGGGACGACCC
CGAACACCCGAATGTCTTCCAGCTCCACAGCAGCTCGGTAGCAAATGGGA
CGGTGCGTTTTTCCGATATTCAGGCGCGCTTTCCCTTGCCTGGCAGCTAC
CACTTTCGGTTCAAGAAGAAGTTCAGAGACGGTTTCGGTGAGTAGAGTAG
GACTTGACCAACGCGTTGGTATGGATGCACTTTCCCCCTGCTTTTCCACA
TTAAGTAACATAGAATTTGCAGTGATGAACAGAATGTGGCTATGTCGATA
CCCAGAGACCTCCTGATTGTTCCACTTCTGCCTTTTGCCACTCTCACTGA
AGCTTGATCCCCTCATCCCCAGCATCCCTGCCGGCCCCACCCCCCTTGGA
TGTCAGTCTGGGTTGATATTTCTGATGGCAGTGCCGTAGTCCCTTCATAT
GATGGAGTATACACTGCCAAGATTGTGCGGTTATCAGCACCGGAGGGAGC
CACTGCTTGGGTGGGTGGGCAGGGAGGACGAGTCGATACTGCGTCGATGG
GTTCTGTTAAGGGACAGGGGATTGGAGGTGGGGGAGGTAGCGTCGGAGGT
GGGCCAGGTGAGACCGCTATTGTTGCTGAATATTGCATGTCAAAGGCCAT
GGTAAAGGTTTAGGAGGGTGCAGGCAGGTTGTTGCAAGCAGGAGAAAACC
TGAGTCAAAGTTCTCAGTAGGGGTATACCATAGGGTATACTTGCTGCAAA
TACCCTGTTTAATTTGGAAAGCAGCCTTGACCAAATACATTTTTGCTCCA
CTAATCTTTTGTAGCTGCACAAAGAGGAGATAACTAAGATCTTCAAGATG
GAGTGAGGAAAGTCTCTGATCTTTTACATTCACAACTTTTGACACATTCA
TCGCATTACGAGGGACTCTTCAGATTCCCCTCTTCTAGGTACACTTACAA
GCTCAATATTTTTTCTGGCAAAATCGGTACATATTCCTCAGATCGCTGCT
TTTTCATACATCCCAAATTTCATTGCATTTTTTGTGTTCAATATCAACCA
ACACGTAGTCTTCTCAGCATTTTTGTGCTTTTTGTCATTCATTGTGTGAC
ATAGGTCTTGGCAGTGATGACCTTCTTAACATGAGTTCAGGTGGTGGCGC
CCCAGTCACACCACGAGCCAATCAGGGAGTGTCCCAGGTGAGAATCATGA
TGTTCTGCTCAAGGTAGTGGTCTGAGGAACTGGAATAAGGACACCTGAAC
TGTCAAGTGTTGCGAGCTGTCCAAAGATGGACAGGGACATTGACGCCTCT
CAGTTGATCTCCTTCTGTGAAAGGAGGAAATGTGACTTTTGGTTTTAGTG
GTTGTTATCATGTACTTCAAAGTGAGAAACATTTGGAGAGTAGGAGATAC
TATTTCAAGAGAGGCTGCGTTCCCTTCCTTTCTTTTTCTTCCTGGTGAAC
AAGAGTAGGTCAAATTTAGTCATCCACTTGTTTTTTGTTTACAGCAGGAC
TGTACTACATTGGTACAAAAAGTTAAAACCATTTTCTTAGAATGAAGAAG
ACAACCAGCTTAGTCTGCTTGCAGATATGTTTCAAGCTTGTGGGGTGGGA
ATCAAAAGTTGCTGTTGGCATGAGGTATGCTGGAGTATATGTTTTGTCCC
ACTTCAGTATGAATATTACTCTTCTGAAGAGATGAAAACTAAAGGGTATT
ATCAGCAGTCAAACAGCCATCAGAGCAGTTCACCCTGACCCCTTCCCCCC
CCCCCCTCCCCCCCCCCCCCCCCGTCCTTTCTCCTGTTGACATAGCAACC
GGATGACCTTTTGGGCATGATGGGTGTGTTTGACAGTTCCCATCCAACAA
CCCGAACATCAGCATCTCCATCATTGGGCCAACAGTCTCCTCGAATGCCG
GGGACACCTGGGGTGGCAGGGGGGCAACAGCCG
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Coding sequence (CDS) from alignment at C-tenellus_contig10826:3092..5424+

>mRNA_C-tenellus_contig10826.3.1 ID=mRNA_C-tenellus_contig10826.3.1|Name=mRNA_C-tenellus_contig10826.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=705bp|location=Sequence derived from alignment at C-tenellus_contig10826:3092..5424+ (Choristocarpus tenellus KU2346)
ATGCAGTGTCTGCTGGTATCTATCAACATTATTAGTGGTTCATTTACTGC
CTGTCCTAACTCAGGATTTGCCGATCCAGAGATTCTTGCCTTTTCAACCT
GTGCTCTTCTGCGTAGGTATTTTATTCCCAGCGATGGGGACGACCCCGAA
CACCCGAATGTCTTCCAGCTCCACAGCAGCTCGGTAGCAAATGGGACGGT
GCGTTTTTCCGATATTCAGGCGCGCTTTCCCTTGCCTGGCAGCTACCACT
TTCGGTTCAAGAAGAAGTTCAGAGACGGTTTCGTCTGGGTTGATATTTCT
GATGGCAGTGCCGTAGTCCCTTCATATGATGGAGTATACACTGCCAAGAT
TGTGCGGTTATCAGCACCGGAGGGAGCCACTGCTTGGGTGGGTGGGCAGG
GAGGACGAGTCGATACTGCGTCGATGGGTTCTGTTAAGGGACAGGGGATT
GGAGGTGGGGGAGGTAGCGTCGGAGGTGGGCCAGGTCTTGGCAGTGATGA
CCTTCTTAACATGAGTTCAGGTGGTGGCGCCCCAGTCACACCACGAGCCA
ATCAGGGAGTGTCCCAGCAACCGGATGACCTTTTGGGCATGATGGGTGTG
TTTGACAGTTCCCATCCAACAACCCGAACATCAGCATCTCCATCATTGGG
CCAACAGTCTCCTCGAATGCCGGGGACACCTGGGGTGGCAGGGGGGCAAC
AGCCG
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