mRNA_C-tenellus_contig10823.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10823.1.1
Unique NamemRNA_C-tenellus_contig10823.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10823.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10823contigC-tenellus_contig10823:1362..4431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size311
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.5195208-UTR-C-tenellus_contig10823:1361..13691680789150.5195208-UTR-C-tenellus_contig10823:1361..1369Choristocarpus tenellus KU2346UTRC-tenellus_contig10823 1362..1369 +
1680789150.5555413-UTR-C-tenellus_contig10823:4335..44311680789150.5555413-UTR-C-tenellus_contig10823:4335..4431Choristocarpus tenellus KU2346UTRC-tenellus_contig10823 4336..4431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.5330255-CDS-C-tenellus_contig10823:1369..13991680789150.5330255-CDS-C-tenellus_contig10823:1369..1399Choristocarpus tenellus KU2346CDSC-tenellus_contig10823 1370..1399 +
1680789150.5465252-CDS-C-tenellus_contig10823:4158..43351680789150.5465252-CDS-C-tenellus_contig10823:4158..4335Choristocarpus tenellus KU2346CDSC-tenellus_contig10823 4159..4335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10823.1.1prot_C-tenellus_contig10823.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10823 1370..4335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10823.1.1

>prot_C-tenellus_contig10823.1.1 ID=prot_C-tenellus_contig10823.1.1|Name=mRNA_C-tenellus_contig10823.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=69bp
MKPIICPMPKATVTATCSSPVHLPSFRHLEVPQTFGSSCSYSTHKTDMHM
PLYNTGGKGQGVAPTQEE*
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mRNA from alignment at C-tenellus_contig10823:1362..4431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10823.1.1 ID=mRNA_C-tenellus_contig10823.1.1|Name=mRNA_C-tenellus_contig10823.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3070bp|location=Sequence derived from alignment at C-tenellus_contig10823:1362..4431+ (Choristocarpus tenellus KU2346)
AATTGGAAATGAAACCAATTATATGTCCCATGCCCAAGGTAGACCATCAA
AATTAACCCAAGCATCCATGGAATTGTATTGTCGTTGCAAGGACTCTCAG
TACTTGGTCAGCAAATGGTAAGTCAGTATTCGTTGGTTTAGCTGGCAAAC
CCAACCACACATACCGTTCGTATCAAGAATCACCATGTGATTGGTGACTG
GACGCCAACTTGTGATTATACACCCGAAGCCGTTAATGCTCTGAATACTG
ATTCTGCCTCGCTGAGTAAAGCTAGAGAGAAATTACGTCAAGGTTTCGAA
AAGATAATTTCAAATATACTGCATCCAATCAGTCATAAGTGTCTCGACAT
TTTAGACCCATGTACTCACAACAACTAATATTTGTCGAATCCAGTAGAAC
TGGATAAATGTATTGCGGCTGAAGTAATAATTTCTACAAAGCCTGGCACC
AAAACCTGTTGATACAAACCTGTACAGAGCAAACCCTCGTACTCAAGAAG
AAATTGACTCATTTGTTAATGTTGAAATCTTCAACTGGATGAAGTTGTGC
TCTGAACCATAGGTTGACATTGATGTGTGTTGATTTAGATGAAGCGGTCT
GTGTAGAAGCATAGGGTCTTGGGATAGTGAAGAACTGATCCAGTGTACCG
AAGCAGTGATGAAATCCAATGTGATAAGTCTAGTGATGACCTCTACAAAG
AAGCTTTAGTGGTGTGCTATGCGAACAGGCTTTACAGAACAGTACAGCAC
TAATCAGTGTCGTAGGGTAGGATAGCTACGTATGCTCATGAGTAGAGGCG
TGTTTCCTTATGTTGAAGATTATGGATATATCAACTCTGAATATATCCCA
TTCAGGTGTGCATAAGTGTACATTTACTGCACAGTGAAGTCGAGTTCTCA
CAAGGGGGTGACACTTAAAAACTATCAAACAAGATACTGGGGTTATTCCG
TCCTTTACAAAATAAAAAGAACCAAATCTAAGTCTGAGTCAACGCCTATG
TGTCACAAGGGTGTTGATGTACCGAGTTTGTAGGGTGGATACGGACCGCC
ATTCCATGTAACAAAGGCAAACATGACTATACAAAGTGAACCAGTAAGAC
ATATGACCATACACATTGCAGGTCCGTATACAGTAGTTGTGAATTCTCAC
ACACTACTGAAACATTACTGGAGAGCAGGTCAACAGTCGACATGGGGTGA
TGACACCGAATTGTATATATGTATCGCAGAGAGAGTAGCCTATGCCTTAA
CAGGTAACCCTTATGGAAGAGGTAGGCATCATTGAAAAACATTGTAGTCC
TTGGGGTAGTCCTATTACCATTGTAGTCAAGTCTGATGTTCTCCACGTTT
CTGTGTAGTCTACCTGTATTGACATCTTGTCAGATAGACTTGGCCTATAA
TGCCTGATATGGAATCACACGTTGATACCGTGTGTGGTGCTAAATTTGTC
ACCGTTTCTGATATTCAGAGTGCGTATTGGCAGATTCCATTTGCCAAAAT
TATATTGATAAGACTTCTTCCTAAACTTCCAGAGGCCAACGTGATTTTAA
GAAGTTGCCATTTGGAATATCGAATGCTCCGTGGCAACTTAAAAAATAAT
TATATTGATAGCCTTTGTCAACTTTGACCCACTTAGTGGTTTGCTCATTC
ACATGGATGGTTTTACTGCTTCTCCTATGTGCGAAGGACGTTTGCACTTA
CTATAGCAGCAGTTCAAAGCTTCTACAGACAACAGGCTTAACCTTGAAAC
CGTCAAATATCCAATTTGAACCTGAAGATGTGTGTTACTTGGGTTACTTT
TGTCGTCGGAAGGGATTTCGTATTGGTGAAGATCGGGTTCATGCTACCAC
TGAATTCCCTAACCCACCACTATCAAAGAACATCGATCTGTCCCAGGTAT
GATTCATTTTATAGGGAATTATTTACTCAAATTTCACACCATGTGCTATC
ATCGAAATGATTTTTTCCGTTCATATCATTGGATACCCCTTGCCCTCACC
TTTCACCTCACGTATATTTGATCGGTTTTGACCTAGAATTTTAAAGCTTT
ATGAACACATGGCCATATGCCTTCCTATTAGTTCCTTACATAGTACTTGG
TACTCATGTTTTTTTTATAGTGGAGCGTGTTGTGGTTCGTCTGAGAAGGG
GTGGGGATAGCTTTAAGATGAAGAAAAGTAAAGGTAAAAATACTTATCCT
AATTGGAAAGAAAAAAGACCGTCCCTATTCCCTCCCCTCCATAAGATGAA
AAAATAAGGATAGGTTGAAACAGGCAATCAATATTAGATGTATCCACACA
ATAATATAATATAGTGATACCAATAGCTTTCTATATTGTAGTGTAACTGT
TGTGGTGTCACGGTGAAAAAAGGTATGTTGCCACAGAGGGCGAAGCTACT
GGTACCACCTTACCTATTCTCAACAATAGTCTAACCTTAACTGTCCTATA
AAAGAAAAATAGTGGTAGAAAAATAGTAGTGCAAGAAGAGTATGTGTGTA
TATTTTCTGTAAGGGTTGGGTTCTTATTACATCGGTCATTTCCTGTTTGA
CTTTTTTGCGTAACAAAATAGTACTACATATATGCACCTCTAACAACTAT
CGATCCTCAATTCCATCCCCAAAAAGTTCGCCTCTCCTCAGCTTAATTGA
ACAAAATGTGTAATGAATCTCCGTTCCGCAATAATTGTTCCATCAATCTT
ACTCTATTTCTCGTACTTAAACGTCCTATTAATATATCTATGTTGGTTCG
TTACTCATCACACAACCTTGCACTCCATCCCTTATTCATGTTTACAGGCA
ACAGTCACAGCCACTTGTTCTTCTCCTGTCCACCTTCCTTCCTTCCGTCA
TCTGGAAGTTCCCCAAACATTCGGAAGTAGTTGCTCATACTCCACGCATA
AAACCGACATGCATATGCCCCTGTATAACACTGGGGGCAAGGGGCAAGGA
GTTGCCCCTACTCAAGAAGAATAGACTTGCCCCTATCCACTAACAATGGG
ATATTCTATCTGGGAGTGCTGGGATGTCCAGGGTGAAAGGGTTTGCCTTG
CCCCTATATTAAAACACATG
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Coding sequence (CDS) from alignment at C-tenellus_contig10823:1362..4431+

>mRNA_C-tenellus_contig10823.1.1 ID=mRNA_C-tenellus_contig10823.1.1|Name=mRNA_C-tenellus_contig10823.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=207bp|location=Sequence derived from alignment at C-tenellus_contig10823:1362..4431+ (Choristocarpus tenellus KU2346)
ATGAAACCAATTATATGTCCCATGCCCAAGGCAACAGTCACAGCCACTTG
TTCTTCTCCTGTCCACCTTCCTTCCTTCCGTCATCTGGAAGTTCCCCAAA
CATTCGGAAGTAGTTGCTCATACTCCACGCATAAAACCGACATGCATATG
CCCCTGTATAACACTGGGGGCAAGGGGCAAGGAGTTGCCCCTACTCAAGA
AGAATAG
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