mRNA_C-tenellus_contig10821.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10821.1.1
Unique NamemRNA_C-tenellus_contig10821.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.950e-33
Identity = 76/209 (36.36%), Postives = 117/209 (55.98%), Query Frame = 1
Query:    1 STQKCYEAAWDQWSEFRTYRGLSRWLDPGSREVEVVKALAELMCFCCGSRGNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSEPRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYDEGGGVHGDFAVRRRDVVWRKGVKRLSWEDRHQAEKVEVAFTGSKGDQ-----VITRGQA 612
            +T + Y A W  W++F + +G+  WL      V V+  L E M     +  NQ+STV+G +AA++++HK  L  ++PT H +I +  KGI R    VG + + R PLTW M+ +           G++  LGL  ++F L R SEL+AY + G VH +F + R  + + +G +R+  EDR  A+ V+V F  SKGDQ      ITRG++
Sbjct:    9 ATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAV-VINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYAD-GLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDGRSITRGRS 215          
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.930e-29
Identity = 75/213 (35.21%), Postives = 116/213 (54.46%), Query Frame = 1
Query:    1 STQKCYEAAWDQWSEFRTYR-GLSRWLDPGSREVEVVKALAELMCFCCGSRGNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSEPRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYDEGGGVHGDFAVRRRDVVWRKGVKRLS----WEDRHQAEKVEVAFTGSKG--DQVITRGQATC 618
            ST   Y AAW  W E+RT     S +LD    E  +   LA+ M +    RGN++ST+ GK+ A++YYHK  + + LP +H   ++V  G+ R  T + +E R RRP++W ++    +     G  G++  LGL  S+FF+ RPSE++AY   G +H +F + R +V + KG ++L     W     A++VEV F  SK   D+ +     TC
Sbjct:   17 STHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHKR-IGVDLPMKHHFFRAVKAGLAREST-LHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGN-GKIHKEFGITRGNVAFWKGEQQLLTPALW---RCADRVEVLFEASKSNHDEAVVSRVKTC 223          
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.840e-23
Identity = 68/213 (31.92%), Postives = 111/213 (52.11%), Query Frame = 1
Query:    1 STQKCYEAAWDQWSEFRT-YRGLSRWLDPGSREVEVVKALAELMCFCCGSRGNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSEPRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYDEGG--GVHGDFAVRRRDVVWRKGVKRLSWEDRHQAEKVEVAFTGSKGDQVITRGQATCVLRR 630
            S+++ Y   +  W +FR    G   ++ P S   + V  L E + +     G + +T+ G ++A++++H+    +++ T H +I+  LKG+ R    VG++ R RRP++W M+ E  +     G  G++  L L  SFFFL R  E++A         HG   +RR DV +  G ++L  E R +A++VEV F  SKGDQ   R  A C   R
Sbjct:   56 SSERTYLGFFGAWVKFREDVVGRPTFMMPSSPSPDSVSQLLEYVAYAFTVLGLRQTTIAGHLSAVKFFHRLAYAMEVDTCHSLIKQALKGVARGHAGVGAQQRVRRPVSWSMLKEGGRLVPQWGTRGRVLFLALSASFFFLMRACEMFAVSSLAMDSCHG---LRRGDVAFFLGSRQLPPERRGEADRVEVRFRSSKGDQF--RKGAVCTRAR 263          
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.040e-9
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  592 VITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777
            V++R +AT VLR + + +   P   ALHSGRI GAT+L   G S + IQR GRWKS AFM Y
Sbjct:   38 VVSRSEATTVLRDMARRVGEDPTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTY 99          
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5K8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.230e-9
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  589 QVITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777
            +VI+R +A+  LR +V      P + ALHSGRI GAT L SMG S + IQR GRWKS AFM+Y
Sbjct:  124 KVISRAEASRHLRLLVSAAGRDPQKYALHSGRIGGATHLASMGASVIQIQRAGRWKSSAFMVY 186          
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5JRM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.450e-7
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:  589 QVITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777
            +VI+R + +  LR +V      P + ALHSGRI G T L  MG S + IQR GRWKS AFM+Y
Sbjct:  168 KVISRAETSRHLRLLVSAAGRDPQKYALHSGRIGGGTHLAIMGASVIQIQRAGRWKSSAFMVY 230          
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-6
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query:  589 QVITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777
            +VI+R +A+  LR +V      P + ALHS RI GAT L SMG S + IQR GRWK  AFM+Y
Sbjct:  573 KVISRAEASRHLRLLVSAAGRDPQKYALHSVRIGGATHLASMGASVIQIQRAGRWKPSAFMVY 635          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KDK3_9PHAE3.950e-3336.36Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDR9_9PHAE1.930e-2935.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3G1_9PHAE1.840e-2331.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN32_9PHAE2.040e-953.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8A0_9PHAE3.230e-955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRM8_9PHAE4.450e-750.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K312_9PHAE1.120e-652.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10821contigC-tenellus_contig10821:289..1202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_05903T0
Model size777
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.28e-08
EggNOG OGs2CZ2S@1|root,2S82T@2759|Eukaryota,3QHP8@4776|Peronosporales
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.4788342-CDS-C-tenellus_contig10821:288..4731680789150.4788342-CDS-C-tenellus_contig10821:288..473Choristocarpus tenellus KU2346CDSC-tenellus_contig10821 289..473 -
1680789150.488225-CDS-C-tenellus_contig10821:610..12021680789150.488225-CDS-C-tenellus_contig10821:610..1202Choristocarpus tenellus KU2346CDSC-tenellus_contig10821 611..1202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10821.1.1prot_C-tenellus_contig10821.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10821 289..1202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10821.1.1

>prot_C-tenellus_contig10821.1.1 ID=prot_C-tenellus_contig10821.1.1|Name=mRNA_C-tenellus_contig10821.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=259bp
STQKCYEAAWDQWSEFRTYRGLSRWLDPGSREVEVVKALAELMCFCCGSR
GNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSE
PRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYD
EGGGVHGDFAVRRRDVVWRKGVKRLSWEDRHQAEKVEVAFTGSKGDQVIT
RGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGR
WKSKAFMIY
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mRNA from alignment at C-tenellus_contig10821:289..1202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10821.1.1 ID=mRNA_C-tenellus_contig10821.1.1|Name=mRNA_C-tenellus_contig10821.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=914bp|location=Sequence derived from alignment at C-tenellus_contig10821:289..1202- (Choristocarpus tenellus KU2346)
TCTACTCAGAAGTGTTATGAGGCAGCTTGGGACCAATGGTCTGAGTTCCG TACATATAGGGGATTGAGTAGGTGGTTAGACCCTGGGAGTAGAGAGGTAG AGGTAGTAAAGGCCCTAGCGGAGTTGATGTGTTTCTGTTGTGGGAGTAGG GGGAACCAAGTAAGCACAGTTAAGGGTAAGATAGCAGCAATCCAATACTA TCATAAACATTTCCTCAACCTCCAGCTCCCCACACAACATTTCATGATCC AATCTGTACTCAAAGGAATAGGGAGGAGCGACACAAAAGTAGGAAGTGAG CCCAGGAAGAGGAGACCCCTAACATGGAGAATGATTGTAGAGACAAAGCA ATGCACCGAAATGCTAGGTAGGGAAGGTAAATTGACAAGGCTGGGTTTGG GTTTCTCGTTCTTCTTTCTAGCTAGACCTTCAGAGTTGTGGGCCTATGAC GAAGGGGGAGGAGTCCATGGAGATTTCGCAGTAAGAAGGAGGGACGTGGT ATGGAGGAAGGGAGTAAAAAGATTAAGTTGGGAAGATAGACACCAGGCAG AAAAAGTAGAGGTAGCGTTCACAGGGTCAAAAGGGGACCAGGGTAGTATT GACAAGATATAAGGTAGGGAAGGAAGGGGGAGAAGAAAGTATGGGAGGTT GGGAGGTGGTAATGGCTATTATGAAATGTTTCCCCGGACGCCCCTCTGAT GACATGTAGGCAAGAAGGGGGGTGGAGAGTGATCACGAGGGGCCAAGCAA CATGTGTCTTGAGGAGAATAGTAAAGGAACTTAGGCTAAGACCAGTAGAG TGCGCCTTGCATTCGGGTAGGATAAGGGGAGCCACGAGATTGACAAGCAT GGGGGTATCAGAATTAGTAATACAGCGGGAGGGAAGATGGAAGTCGAAGG CTTTTATGATATAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10821:289..1202-

>mRNA_C-tenellus_contig10821.1.1 ID=mRNA_C-tenellus_contig10821.1.1|Name=mRNA_C-tenellus_contig10821.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=777bp|location=Sequence derived from alignment at C-tenellus_contig10821:289..1202- (Choristocarpus tenellus KU2346)
TCTACTCAGAAGTGTTATGAGGCAGCTTGGGACCAATGGTCTGAGTTCCG
TACATATAGGGGATTGAGTAGGTGGTTAGACCCTGGGAGTAGAGAGGTAG
AGGTAGTAAAGGCCCTAGCGGAGTTGATGTGTTTCTGTTGTGGGAGTAGG
GGGAACCAAGTAAGCACAGTTAAGGGTAAGATAGCAGCAATCCAATACTA
TCATAAACATTTCCTCAACCTCCAGCTCCCCACACAACATTTCATGATCC
AATCTGTACTCAAAGGAATAGGGAGGAGCGACACAAAAGTAGGAAGTGAG
CCCAGGAAGAGGAGACCCCTAACATGGAGAATGATTGTAGAGACAAAGCA
ATGCACCGAAATGCTAGGTAGGGAAGGTAAATTGACAAGGCTGGGTTTGG
GTTTCTCGTTCTTCTTTCTAGCTAGACCTTCAGAGTTGTGGGCCTATGAC
GAAGGGGGAGGAGTCCATGGAGATTTCGCAGTAAGAAGGAGGGACGTGGT
ATGGAGGAAGGGAGTAAAAAGATTAAGTTGGGAAGATAGACACCAGGCAG
AAAAAGTAGAGGTAGCGTTCACAGGGTCAAAAGGGGACCAGGTGATCACG
AGGGGCCAAGCAACATGTGTCTTGAGGAGAATAGTAAAGGAACTTAGGCT
AAGACCAGTAGAGTGCGCCTTGCATTCGGGTAGGATAAGGGGAGCCACGA
GATTGACAAGCATGGGGGTATCAGAATTAGTAATACAGCGGGAGGGAAGA
TGGAAGTCGAAGGCTTTTATGATATAT
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