mRNA_C-tenellus_contig10821.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 132 bits (333), Expect = 3.950e-33 Identity = 76/209 (36.36%), Postives = 117/209 (55.98%), Query Frame = 1 Query: 1 STQKCYEAAWDQWSEFRTYRGLSRWLDPGSREVEVVKALAELMCFCCGSRGNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSEPRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYDEGGGVHGDFAVRRRDVVWRKGVKRLSWEDRHQAEKVEVAFTGSKGDQ-----VITRGQA 612 +T + Y A W W++F + +G+ WL V V+ L E M + NQ+STV+G +AA++++HK L ++PT H +I + KGI R VG + + R PLTW M+ + G++ LGL ++F L R SEL+AY + G VH +F + R + + +G +R+ EDR A+ V+V F SKGDQ ITRG++ Sbjct: 9 ATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAV-VINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYAD-GLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDGRSITRGRS 215
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.930e-29 Identity = 75/213 (35.21%), Postives = 116/213 (54.46%), Query Frame = 1 Query: 1 STQKCYEAAWDQWSEFRTYR-GLSRWLDPGSREVEVVKALAELMCFCCGSRGNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSEPRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYDEGGGVHGDFAVRRRDVVWRKGVKRLS----WEDRHQAEKVEVAFTGSKG--DQVITRGQATC 618 ST Y AAW W E+RT S +LD E + LA+ M + RGN++ST+ GK+ A++YYHK + + LP +H ++V G+ R T + +E R RRP++W ++ + G G++ LGL S+FF+ RPSE++AY G +H +F + R +V + KG ++L W A++VEV F SK D+ + TC Sbjct: 17 STHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHKR-IGVDLPMKHHFFRAVKAGLAREST-LHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGN-GKIHKEFGITRGNVAFWKGEQQLLTPALW---RCADRVEVLFEASKSNHDEAVVSRVKTC 223
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.840e-23 Identity = 68/213 (31.92%), Postives = 111/213 (52.11%), Query Frame = 1 Query: 1 STQKCYEAAWDQWSEFRT-YRGLSRWLDPGSREVEVVKALAELMCFCCGSRGNQVSTVKGKIAAIQYYHKHFLNLQLPTQHFMIQSVLKGIGRSDTKVGSEPRKRRPLTWRMIVETKQCTEMLGREGKLTRLGLGFSFFFLARPSELWAYDEGG--GVHGDFAVRRRDVVWRKGVKRLSWEDRHQAEKVEVAFTGSKGDQVITRGQATCVLRR 630 S+++ Y + W +FR G ++ P S + V L E + + G + +T+ G ++A++++H+ +++ T H +I+ LKG+ R VG++ R RRP++W M+ E + G G++ L L SFFFL R E++A HG +RR DV + G ++L E R +A++VEV F SKGDQ R A C R Sbjct: 56 SSERTYLGFFGAWVKFREDVVGRPTFMMPSSPSPDSVSQLLEYVAYAFTVLGLRQTTIAGHLSAVKFFHRLAYAMEVDTCHSLIKQALKGVARGHAGVGAQQRVRRPVSWSMLKEGGRLVPQWGTRGRVLFLALSASFFFLMRACEMFAVSSLAMDSCHG---LRRGDVAFFLGSRQLPPERRGEADRVEVRFRSSKGDQF--RKGAVCTRAR 263
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 2.040e-9 Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 592 VITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777 V++R +AT VLR + + + P ALHSGRI GAT+L G S + IQR GRWKS AFM Y Sbjct: 38 VVSRSEATTVLRDMARRVGEDPTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTY 99
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5K8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A0_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 3.230e-9 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 589 QVITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777 +VI+R +A+ LR +V P + ALHSGRI GAT L SMG S + IQR GRWKS AFM+Y Sbjct: 124 KVISRAEASRHLRLLVSAAGRDPQKYALHSGRIGGATHLASMGASVIQIQRAGRWKSSAFMVY 186
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5JRM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM8_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 4.450e-7 Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 Query: 589 QVITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777 +VI+R + + LR +V P + ALHSGRI G T L MG S + IQR GRWKS AFM+Y Sbjct: 168 KVISRAETSRHLRLLVSAAGRDPQKYALHSGRIGGGTHLAIMGASVIQIQRAGRWKSSAFMVY 230
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.120e-6 Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 589 QVITRGQATCVLRRIVKELRLRPVECALHSGRIRGATRLTSMGVSELVIQREGRWKSKAFMIY 777 +VI+R +A+ LR +V P + ALHS RI GAT L SMG S + IQR GRWK AFM+Y Sbjct: 573 KVISRAEASRHLRLLVSAAGRDPQKYALHSVRIGGATHLASMGASVIQIQRAGRWKPSAFMVY 635 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10821.1.1 >prot_C-tenellus_contig10821.1.1 ID=prot_C-tenellus_contig10821.1.1|Name=mRNA_C-tenellus_contig10821.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=259bp STQKCYEAAWDQWSEFRTYRGLSRWLDPGSREVEVVKALAELMCFCCGSRback to top mRNA from alignment at C-tenellus_contig10821:289..1202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10821.1.1 ID=mRNA_C-tenellus_contig10821.1.1|Name=mRNA_C-tenellus_contig10821.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=914bp|location=Sequence derived from alignment at C-tenellus_contig10821:289..1202- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10821:289..1202- >mRNA_C-tenellus_contig10821.1.1 ID=mRNA_C-tenellus_contig10821.1.1|Name=mRNA_C-tenellus_contig10821.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=777bp|location=Sequence derived from alignment at C-tenellus_contig10821:289..1202- (Choristocarpus tenellus KU2346)back to top |