mRNA_C-tenellus_contig10799.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10799.1.1
Unique NamemRNA_C-tenellus_contig10799.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10799.1.1 vs. uniprot
Match: D7G1Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q7_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.460e-30
Identity = 81/185 (43.78%), Postives = 108/185 (58.38%), Query Frame = 1 
Query:    1 DKQERNELDALRVENDTLRRSLGELECKINQAEKSFLAHTESQMMKENRDH-HLGVGQEVD--------------------KLNGILEWLQTAKDDIMENDHNKQQLVGDMRVLHTLLVKAKEERRRHDGIVNSLTRKCQEEEARVFELQEEMKSQNEVFCGILRKDRNVYEARTEIAEAVSANR 492
            D  ER ELDALR+ENDTLRR LG LE K+ +AE+S  A+ ++  +K+     H G  QE D                     L+GIL+WL  AK D++END +K QL GD+R+L+ LL KAK ER+ HDG V  L +       R  EL +E++ Q + F  +L+ DR+VYE RTE AEA +  R
Sbjct:    9 DSDERTELDALRLENDTLRRHLGRLEDKVQRAEES--ANLQAYQVKQMAQQLHHGHSQETDVHEQQQQQRFAEGAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQRKSFTRVLKSDRDVYETRTEAAEANAERR 191
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BLAST of mRNA_C-tenellus_contig10799.1.1 vs. uniprot
Match: A0A6H5L251_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L251_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.700e-29
Identity = 85/182 (46.70%), Postives = 105/182 (57.69%), Query Frame = 1 
Query:    1 DKQERNELDALRVENDTLRRSLGELECKINQAEKS--FLAHTESQMMK-------ENRDHHLGVGQ---------EVDKLNGILEWLQTAKDDIMENDHNKQQLVGDMRVLHTLLVKAKEERRRHDGIVNSLTRKCQEEEARVFELQEEMKSQNEVFCGILRKDRNVYEARTEIAEAVSANR 492
            D  ER ELDALR+ENDTLRR LG LE K+ +AE+S    A+   QM +       E  D HL   Q         EV  L+GIL+WL  AK D++END +K QL GD+R+L+ LL KAK ER+ HDG V  L +      AR  ELQ         F  +L+ DR+VYEARTE AEA +  R
Sbjct:   41 DSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLPAYQVQQMAQQLHHGPTEETDVHLQQQQRLAESAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLQKAKRERKSHDGKVQRLEKSIATSNARAVELQRRS------FTRVLKSDRDVYEARTEAAEANAERR 216
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BLAST of mRNA_C-tenellus_contig10799.1.1 vs. uniprot
Match: A0A7S1U018_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U018_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.370e-7
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:   16 NELDALRVENDTLRRSLGELECKINQAEKSFLAHTESQMMKENRDHHLGVGQEVDKLNGILEWLQTAKDDIME---NDHNKQQLVGDMRVLHTLLVKAKEERRRHDGIVNSLTRKCQEEEARVFELQEEMKSQNEVFCGIL 429
            NELDALR+END LRR LG +E  +++ E+        +  +   D        V +L G++  +QTA+++ M         ++L  + R L+ LL KAK ER     +VN L  + ++EE +V +L+E  +   + F  ++
Sbjct:   15 NELDALRIENDVLRRRLGHMEQAVDRIERRTPQTGRRKGSRAQEDA-------VTELKGLVSEIQTARNEAMTAAVTQEKYEKLQNEYRFLYGLLQKAKTERGSMQRLVNELEGQVKQEEEKVRKLEEMRERDRDSFAQVI 148
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10799.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1Q7_ECTSI2.460e-3043.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L251_9PHAE1.700e-2946.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U018_9STRA5.370e-731.21Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10799contigC-tenellus_contig10799:2218..3045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size492
Hectar predicted targeting categoryother localisation
Exons3
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.397128-CDS-C-tenellus_contig10799:2217..23281680789149.397128-CDS-C-tenellus_contig10799:2217..2328Choristocarpus tenellus KU2346CDSC-tenellus_contig10799 2218..2328 -
1680789149.412757-CDS-C-tenellus_contig10799:2569..27401680789149.412757-CDS-C-tenellus_contig10799:2569..2740Choristocarpus tenellus KU2346CDSC-tenellus_contig10799 2570..2740 -
1680789149.4292538-CDS-C-tenellus_contig10799:2835..30451680789149.4292538-CDS-C-tenellus_contig10799:2835..3045Choristocarpus tenellus KU2346CDSC-tenellus_contig10799 2836..3045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10799.1.1prot_C-tenellus_contig10799.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10799 2218..3045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10799.1.1

>prot_C-tenellus_contig10799.1.1 ID=prot_C-tenellus_contig10799.1.1|Name=mRNA_C-tenellus_contig10799.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=164bp
DKQERNELDALRVENDTLRRSLGELECKINQAEKSFLAHTESQMMKENRD
HHLGVGQEVDKLNGILEWLQTAKDDIMENDHNKQQLVGDMRVLHTLLVKA
KEERRRHDGIVNSLTRKCQEEEARVFELQEEMKSQNEVFCGILRKDRNVY
EARTEIAEAVSANR
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mRNA from alignment at C-tenellus_contig10799:2218..3045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10799.1.1 ID=mRNA_C-tenellus_contig10799.1.1|Name=mRNA_C-tenellus_contig10799.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=828bp|location=Sequence derived from alignment at C-tenellus_contig10799:2218..3045- (Choristocarpus tenellus KU2346)
GACAAGCAGGAGCGGAATGAACTCGATGCACTTAGAGTGGAAAACGACAC
ACTGCGTCGAAGCCTGGGCGAGTTGGAATGTAAGATCAATCAAGCCGAAA
AATCTTTCCTAGCTCATACTGAGTCACAAATGATGAAAGAAAATCGAGAT
CATCATCTGGGTGTCGGACAAGAAGTGGACAAGCTCAATGGCATCTTGGA
ATGGCTCCAGGTAGACCTTTCTTACTCGAAATAGCATTGAAGTTCTACGT
GAGGTACAGCTTTATTCCATCGAGAGTTGTCCATTCAACAGTTCCTCCTA
TGCAGACAGCGAAGGATGACATTATGGAGAACGATCACAACAAGCAACAG
CTGGTTGGTGATATGCGCGTCTTGCATACTCTTCTAGTCAAAGCGAAGGA
AGAGAGGCGACGGCATGACGGAATTGTCAACTCCCTGACGCGCAAGTGTC
AGGAAGAGGAAGCGCGGGTGTTCGAGGTAAGATTACACATTGTTATCTCC
ATTCTAGATGCACCCCAATCCGACTGTCAGTGATATTCAGCGAACACCTG
CCACCTTCAGTGCCATGCAGTATGGGGACAGTGCTCACACTCCAGTCATC
AAGAAAAGTATACTGGTCTTCTCTTCTGAAGGTCAGGGCTCCCTACAAGT
GCACCAGAGTGCTCTGTCTCAAACCCACTCTTGTGCCTGACAACAATCCT
TCAATGAACCTCAACAGCTCCAGGAGGAGATGAAGAGCCAGAATGAAGTA
TTTTGCGGAATCCTCAGGAAAGACAGGAATGTGTATGAGGCAAGAACAGA
AATAGCAGAGGCTGTATCAGCCAACAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10799:2218..3045-

>mRNA_C-tenellus_contig10799.1.1 ID=mRNA_C-tenellus_contig10799.1.1|Name=mRNA_C-tenellus_contig10799.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=492bp|location=Sequence derived from alignment at C-tenellus_contig10799:2218..3045- (Choristocarpus tenellus KU2346)
GACAAGCAGGAGCGGAATGAACTCGATGCACTTAGAGTGGAAAACGACAC
ACTGCGTCGAAGCCTGGGCGAGTTGGAATGTAAGATCAATCAAGCCGAAA
AATCTTTCCTAGCTCATACTGAGTCACAAATGATGAAAGAAAATCGAGAT
CATCATCTGGGTGTCGGACAAGAAGTGGACAAGCTCAATGGCATCTTGGA
ATGGCTCCAGACAGCGAAGGATGACATTATGGAGAACGATCACAACAAGC
AACAGCTGGTTGGTGATATGCGCGTCTTGCATACTCTTCTAGTCAAAGCG
AAGGAAGAGAGGCGACGGCATGACGGAATTGTCAACTCCCTGACGCGCAA
GTGTCAGGAAGAGGAAGCGCGGGTGTTCGAGCTCCAGGAGGAGATGAAGA
GCCAGAATGAAGTATTTTGCGGAATCCTCAGGAAAGACAGGAATGTGTAT
GAGGCAAGAACAGAAATAGCAGAGGCTGTATCAGCCAACAGG
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