mRNA_C-tenellus_contig10729.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10729.1.3
Unique NamemRNA_C-tenellus_contig10729.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A7S3YMJ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMJ6_HETAK)

HSP 1 Score: 261 bits (667), Expect = 3.810e-76
Identity = 127/291 (43.64%), Postives = 185/291 (63.57%), Query Frame = 3
Query:  429 IPAMENGKRKEHGVPGWHTQQNFCRVVALAIVLLCLLCHGVIDMGIAVLWVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFF-TPCVWPYRIGTSKEVVPQYINGKRVRYAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELFGFVPNKGLK 1298
            + A + G         ++ +  F RV+A++ +      +  +D  +A  W +LR    FKH+SFEP L++  F  YI  + ++D   +P +  YRI  ++++ P   + +R+   +  Y+ PL+ FD   PRR LPEE P+  +++L +V  + +YDI FFL H T+H+ P LY+K+HA HH     RA ++VRHT  DG  DV CSI ALN+   HPL+R+L++VV+ +L+TELHAGYD PW +H L P GL+GGPPRHD HH+ G +YMQKFGTYLD L GFVP +G+K
Sbjct:   33 LQAADFGPENYRSSAEFNRKVMFFRVLAVSAIFTVYWNYSYLDSKVAEFWHFLRVQWWFKHDSFEPLLASTAFVFYINVYRMVDSLNSPKILRYRIQKNQDMKPWKKSRERMYNEMMWYVGPLLVFDYLLPRRSLPEEPPTLLQIILSLVATVNLYDIFFFLCHTTVHKVPYLYRKVHAVHHTHPAVRACDAVRHTAADGGADVACSILALNLYGAHPLARSLHNVVLTYLLTELHAGYDAPWMLHRLAPAGLLGGPPRHDHHHKYGHLYMQKFGTYLDWLCGFVPRRGVK 323          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A0G4I189_9ALVE (Fatty acid hydroxylase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I189_9ALVE)

HSP 1 Score: 220 bits (560), Expect = 4.620e-61
Identity = 110/267 (41.20%), Postives = 159/267 (59.55%), Query Frame = 3
Query:  501 RVVALAIVLLCLLCHGVIDMGIAVLWVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYINGKRVR----YAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELFGFVPNK 1289
            R+V L +++ C L    +D  +   W  LR  P  KH+S EP  ST  FF ++  F   D + P +W +R     + V +    K        A+ GY++PL+AFD+ FPRR LPE  PS   L+  V  ++ +YD+ FF  H+  H+ P L++ IH +HHQ+   +A E VR +F+DG + V  +I ALN+L  HPL+R L+D  I +L+TE+H+GYDFPW +H +LP G+M GP +H+LHH  G  Y Q+F  YLD LFG  P +
Sbjct:   18 RLVVLVVLVTCFLHRQRLDDLLDSFWGSLRRQPWIKHDSCEPLFSTVVFFFWVNLFRFFDLYCPFLWRFRYNQRDDPVKEGFLIKTQDPHGVLAVVGYIVPLLAFDVLFPRRRLPERGPSFFGLLGSVAASLWLYDLLFFFVHLGFHKIP-LFQGIHRRHHQEGRMKASEVVRLSFLDGALQVGANILALNLLRLHPLARLLHDAAITFLLTEIHSGYDFPWALHRILPEGVMAGPEKHELHHILGTGYFQQFFCYLDNLFGLFPEE 283          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A6A7GA17_9CRUS (Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA17_9CRUS)

HSP 1 Score: 213 bits (543), Expect = 4.160e-59
Identity = 111/277 (40.07%), Postives = 162/277 (58.48%), Query Frame = 3
Query:  477 WHTQQNFCRVVALAIVLLCLLCHGVIDMGIAVLWVW--LRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYINGK----RVRYAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELFGFVPNK 1289
            W T+  +  V++L++         V  +  A+ W W   R   I+KH+SFEP +  + FFL   F+G +D   P    Y+      +V  +   +    R++    GY+ PL+ FD  +PRR LP ++ S  RL  EV   + +YD  FF+ H  LH  P +++ IHA+HH  +  +A +++R +F +  ++V CSI A+NV   HPLSRA+Y++VII L+ ELH GYD PW + N++PFG++GG  RHD HH  G VY QKF TYLD LFGFV  K
Sbjct:   24 WLTRGFYACVISLSL-------RHVTVLDEALRWFWESARTTFIWKHDSFEPFIVVSTFFLVFSFWGAIDKLCPQFHKYKF--HAHIVEDWKTFRFPVDRIKSEFIGYVAPLLIFDFLYPRRRLPADSVSFGRLWFEVTLCLLIYDALFFVAHWLLHIIPTVFRAIHARHHDMIPIKALDTIRLSFAEQIINVSCSIIAVNVSGSHPLSRAVYNIVIICLLVELHCGYDMPWMLQNVVPFGIIGGSVRHDRHHVVGTVYYQKFFTYLDNLFGFVEKK 291          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A7S1DGD3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DGD3_HEMAN)

HSP 1 Score: 201 bits (511), Expect = 1.300e-54
Identity = 107/263 (40.68%), Postives = 151/263 (57.41%), Query Frame = 3
Query:  501 RVVALAIVLLCLLCHGVIDMGIAVLWVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYINGK-RVRYAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQ-KLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELFGFVP 1283
            R V  A+V  CL+ H  ++  ++  W W R     + +SFEP ++T  F + I  F I+D F      Y+        P+ +     V Y++  YL PL  FD  + RR LPEEAP+   L L+V+ ++ +YD  FF  H+ +H+ P L    H+ HH  K    A E +RH+  DG M V  +I ALNVL  HPLSRA+++VV+ +L+ E H+GYD  W  HN+LPFG+ GG   H+ HHR GK + Q+F TYLD  FG+VP
Sbjct:   21 RSVYAAVVTACLVAHPSLNAALSEWWGWARQTWFVRLDSFEPIVATLGFGVPIVLFRIMDRFPETFSRYKSSLEPATTPKNLAPPTHVIYSLVLYLAPLFVFDFLYQRRNLPEEAPTPLSLTLQVLSSVLLYDFLFFWLHLGMHKLPFLRFMQHSVHHSNKGGINATEVLRHSLADGVMQVAVNIVALNVLQTHPLSRAVHNVVVTYLLAESHSGYDCAWMCHNVLPFGVYGGGIAHERHHRGGKYHYQQFFTYLDRHFGYVP 283          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A7S2S5J1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5J1_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.740e-53
Identity = 98/242 (40.50%), Postives = 147/242 (60.74%), Query Frame = 3
Query:  552 IDMGIAVLWVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYIN-GKRVRYAIFGYLMPLVAFDLAFPRRVLPEEAPS-ARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELF 1271
            ID  +   W W++    F+H++FEP ++T  F ++I  F ILD     +  Y I      +   +  G +V+  +  YL  L  FD  +PRR LP+  P  A +++L +V A+ VYD  FF  HV +H+   L +  H KHH      + E +RH+FVDG++ VMC+I ALN+L  HP SR LY++V+ +++TE+H GYD PW +HN++PFGL+GG  RH+ HH +G+ Y Q+F TYLD  +
Sbjct:    3 IDSAVERSWSWIKEKQWFQHDTFEPLVATLSFAVWIHAFRILDLMP--LGQYIIDPKYRALDARVGFGVKVKSGLV-YLGTLFTFDFLYPRRKLPDTCPGGAGKVLLHIVLALFVYDFLFFHIHVAMHKVEGL-RSFHKKHHSVRGLHSTEVLRHSFVDGSLQVMCNIAALNLLKLHPYSRTLYNIVVTYMLTEIHCGYDLPWMLHNVIPFGLLGGSVRHEEHHITGRRYFQQFFTYLDATY 240          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A1Y1I1Z9_KLENI (Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Z9_KLENI)

HSP 1 Score: 190 bits (483), Expect = 6.140e-51
Identity = 93/260 (35.77%), Postives = 154/260 (59.23%), Query Frame = 3
Query:  543 HGVIDMGIAVLWVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYINGKRVRYAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHH-QKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELFGFVPNKGLKLDNIKHQ 1319
            H   +  +A +W   R+ P+ +H+SFEP ++   FF++   + +LD + P +  Y++  S  +    + G     A++ YL PL+ FD  +PRR L +  PS  R+V +V+GA+ +YD+ FF  H+ LH+ P L ++ HA+HH      RA ++ R   ++    V  +I +LN+L CH LSR ++++ I +++TE+H+GYDFPW +H ++PF L+GG  RH  HH  G  Y Q+F TYLD+ + +V  K  ++     Q
Sbjct:   22 HKSANAAVAAVWDTYRSIPLVQHDSFEPLVAVTAFFIWTRMWHVLDVYVPSLRVYKLHLSHNIKAWKLEGYPRWEAVY-YLAPLLVFDWIYPRRKLDQPPPSVERVVFDVIGALLIYDLLFFFSHLALHKVPFL-RRFHARHHVMGGDMRACDATRAHPLEELALVTFAITSLNLLRCHFLSRFIFNITIGYMLTEVHSGYDFPWMLHRVVPFKLVGGSVRHGQHHAKGDRYYQQFFTYLDDTYEWVRRKQQRIGESPDQ 279          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A830HPD7_9CHLO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HPD7_9CHLO)

HSP 1 Score: 183 bits (465), Expect = 2.690e-48
Identity = 93/231 (40.26%), Postives = 139/231 (60.17%), Query Frame = 3
Query:  576 WVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWP--YRIGTSKEVVPQYINGKRVRYAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLD 1262
            W  LR    F+H++FEP L+T  F  ++  +  +D       P  YR+ TS E + Q+     V   +  YL PL  +D   PRRVLP +AP+A   + +V+ ++ +YD  F ++H  +H HP LY+++HAKHH   V RA ++VR + ++  +DV CSI AL +   HPLSRA++++VI +LITELH+GY FPW   +++P+GL  GP +H LHH     Y  KF   L+
Sbjct:   43 WDDLRVRWWFQHDTFEPVLATTSFAFWMALWYAVDLVAYAHIPTRYRLQTS-ESMHQWKPQGHVAQEVLLYLAPLAMYDHVKPRRVLPPDAPTALACLAQVMCSLLLYDCLFAIFHRAMHSHPVLYRRVHAKHHHNAVVRARDAVRVSALEQLVDVSCSILALKLTGSHPLSRAIHNIVITFLITELHSGYSFPWSFESVVPYGLYLGPTKHVLHHSVNAPYYAKFFAVLE 272          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A7S2UXV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV7_9STRA)

HSP 1 Score: 178 bits (452), Expect = 8.740e-48
Identity = 91/189 (48.15%), Postives = 120/189 (63.49%), Query Frame = 3
Query:  771 IFGYLMPLVAFDLAFPRRVLPEE----APSARRLVLEVVGAIAVYDITFFLWHVTLHQHPK------------------LYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELF 1271
            +  Y+ PLVAFDL  PRR L  E    +PSA  ++ ++  ++  YD+ FF  H  LH  P                   LY+ IHAKHH +   RA E+VRHTF+DG+M V CSI AL +   HPL+RAL+++V+I L+TELHAGYD PW +HN++P G++GGPPRHD HHR+G  Y Q+ GTYLD  F
Sbjct:    5 LIWYIFPLVAFDLILPRRHLLLENHADSPSALVVLWQLACSLFWYDVLFFFLHAFLHLGPGFLWGSGSKSGGVKESVGWLYRTIHAKHHSQPHLRACEAVRHTFLDGSMTVGCSILALKLAGSHPLARALHNIVLIGLLTELHAGYDLPWALHNVMPAGILGGPPRHDDHHRTGTRYYQQLGTYLDWFF 193          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: D7G5E5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E5_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 3.850e-44
Identity = 86/167 (51.50%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  498 CRVVALAIVLLCLLCHGVIDMGIAVLWVWLRANPIFKHESFEPCLSTACFFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYINGKRVRYAIFGYLMPLVAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPE 998
            CR +A+  V +   C   ++  + V W  LRAN +FKHESFEP LS A F  +IG +G LDFF P    +R   S ++   +  G R+R     Y+ PLV FDL FPRR LPE APS  RLVLEVV AIAVYD  FF WH +LH +P LY+++HAKHH+  VQRAPE
Sbjct:   12 CRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDL-SSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPE 177          
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Match: A0A1Z5JQM6_FISSO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQM6_FISSO)

HSP 1 Score: 172 bits (437), Expect = 2.220e-43
Identity = 104/304 (34.21%), Postives = 157/304 (51.64%), Query Frame = 3
Query:  552 IDMGIAVLWVWLRANP-----IFKHESFEPCLSTACFFLYIGFFGILDFFTPCV--------W-PYRIGT-----------------------SKEVVPQYI--------NGKRVRYAIFGYLMPLVAFDLAFPRR---VLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKLYKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRALYDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQKFGTYLDELFGFVPNKGLKL--DNIK 1313
            ID+ +A LW +L  +      IF+ +S+E  L+   FF YI FF   D              W  YR+                           EVV  Y         N K     ++ Y++PL+ +D+  PRR   +    AP+  +++ ++   + +YDI FF  H+ +H+ P +Y+ IHAKHHQ+   RA + VR + V+  ++V  SI ALN L  HP+SR++Y+++I +L+TELH G+DFPW   N++PFGL  G  RH  HHR+GK Y QKF  ++D LFG+       L  D++K
Sbjct:   83 IDVKLASLWAYLTTSSSLIPRIFRTDSYEWVLAVTAFFFYIHFFWYADVSVRKASEQGKIHPWRKYRLQDRFEADKHRRSVERKLRRNGETPFQNEVVTDYSEVTKQAGWNWKAWTCEVWVYVVPLLTWDILSPRRHRRLAAFGAPTTIQVLRDITCGLLLYDILFFTGHILMHKIPLIYRTIHAKHHQEPEVRAGDVVRLSMVEEVLEVGFSIIALNALGAHPISRSIYNLIITFLLTELHCGFDFPWTPQNVVPFGLATGSRRHHFHHRNGKHYYQKFFFHVDRLFGYFQKDDGSLHGDSVK 386          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10729.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YMJ6_HETAK3.810e-7643.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4I189_9ALVE4.620e-6141.20Fatty acid hydroxylase domain-containing protein n... [more]
A0A6A7GA17_9CRUS4.160e-5940.07Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hiro... [more]
A0A7S1DGD3_HEMAN1.300e-5440.68Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2S5J1_9STRA3.740e-5340.50Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1Y1I1Z9_KLENI6.140e-5135.77Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium n... [more]
A0A830HPD7_9CHLO2.690e-4840.26Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S2UXV7_9STRA8.740e-4848.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G5E5_ECTSI3.850e-4451.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JQM6_FISSO2.220e-4334.21Fatty acid hydroxylase domain-containing protein n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10729contigC-tenellus_contig10729:977..5472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog529818.AMSG_12425T0
PFAMsFA_hydroxylase,PAH,Sin3_corepress,Sin3a_C
Model size2697
Max annot lvl2759|Eukaryota
KEGG rclassRC00963
KEGG koko:K10223,ko:K11644
KEGG ReactionR07218
KEGG Pathwayko00120,ko04139,ko04919,ko05016,ko05202,map00120,map04139,map04919,map05016,map05202
Hectar predicted targeting categorysignal peptide
Exons5
Evalue4.98e-49
EggNOG OGsCOG3000@1|root,COG5602@1|root,KOG0873@2759|Eukaryota,KOG4204@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010750.1
EC1.14.99.38
Descriptionhistone deacetylation
Cds size1128
COG categoryB
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10729.1.3prot_C-tenellus_contig10729.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10729 1171..4097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789146.3804693-UTR-C-tenellus_contig10729:976..11701680789146.3804693-UTR-C-tenellus_contig10729:976..1170Choristocarpus tenellus KU2346UTRC-tenellus_contig10729 977..1170 +
1680789146.4523377-UTR-C-tenellus_contig10729:4097..54721680789146.4523377-UTR-C-tenellus_contig10729:4097..5472Choristocarpus tenellus KU2346UTRC-tenellus_contig10729 4098..5472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789146.3957112-CDS-C-tenellus_contig10729:1170..15991680789146.3957112-CDS-C-tenellus_contig10729:1170..1599Choristocarpus tenellus KU2346CDSC-tenellus_contig10729 1171..1599 +
1680789146.4093108-CDS-C-tenellus_contig10729:1912..20861680789146.4093108-CDS-C-tenellus_contig10729:1912..2086Choristocarpus tenellus KU2346CDSC-tenellus_contig10729 1913..2086 +
1680789146.4221869-CDS-C-tenellus_contig10729:2800..30011680789146.4221869-CDS-C-tenellus_contig10729:2800..3001Choristocarpus tenellus KU2346CDSC-tenellus_contig10729 2801..3001 +
1680789146.43509-CDS-C-tenellus_contig10729:3395..35351680789146.43509-CDS-C-tenellus_contig10729:3395..3535Choristocarpus tenellus KU2346CDSC-tenellus_contig10729 3396..3535 +
1680789146.443892-CDS-C-tenellus_contig10729:3913..40971680789146.443892-CDS-C-tenellus_contig10729:3913..4097Choristocarpus tenellus KU2346CDSC-tenellus_contig10729 3914..4097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10729.1.3

>prot_C-tenellus_contig10729.1.3 ID=prot_C-tenellus_contig10729.1.3|Name=mRNA_C-tenellus_contig10729.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=376bp
MFDILLKNAIVTVWVCSRLLLLHSLPQPQTPRKRERLLVCPTSPNILCGL
CLSRSSNPRFNYRLIFVQHTRIYLTTGGIPAMENGKRKEHGVPGWHTQQN
FCRVVALAIVLLCLLCHGVIDMGIAVLWVWLRANPIFKHESFEPCLSTAC
FFLYIGFFGILDFFTPCVWPYRIGTSKEVVPQYINGKRVRYAIFGYLMPL
VAFDLAFPRRVLPEEAPSARRLVLEVVGAIAVYDITFFLWHVTLHQHPKL
YKKIHAKHHQKLVQRAPESVRHTFVDGTMDVMCSIFALNVLHCHPLSRAL
YDVVIIWLITELHAGYDFPWQVHNLLPFGLMGGPPRHDLHHRSGKVYMQK
FGTYLDELFGFVPNKGLKLDNIKHQ*
back to top

mRNA from alignment at C-tenellus_contig10729:977..5472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10729.1.3 ID=mRNA_C-tenellus_contig10729.1.3|Name=mRNA_C-tenellus_contig10729.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4496bp|location=Sequence derived from alignment at C-tenellus_contig10729:977..5472+ (Choristocarpus tenellus KU2346)
ATAGTCTCCTAGAACTCAACCTGACGTCAATGTGAACCTCTGATGGTGTG AGAGGTGTGGTGAGGGAAGAAATCCCAATCTTCGCATGCGATTGTTGTGG TTTGTTCGTCTGGTCCGAGATCAAATTCACACTTGTCTGGAACAATCATC CGATATTTCCCGATACATTCCTAGTGTTGTCGTTTGGTTTTGAAATGTTT GACATATTATTGAAGAATGCTATTGTTACAGTATGGGTATGTTCGAGGTT GCTTCTCCTTCACAGCCTTCCCCAGCCCCAAACGCCGAGAAAGAGAGAAC GCCTTCTAGTTTGTCCTACCAGCCCCAATATTCTTTGTGGATTGTGTTTG TCAAGATCCTCGAACCCCAGATTCAACTATAGACTGATATTTGTTCAACA TACACGAATATACCTAACAACCGGGGGTATACCTGCAATGGAAAATGGAA AGCGTAAAGAGCATGGGGTCCCCGGATGGCACACACAGCAAAATTTCTGC CGCGTCGTTGCCCTGGCGATTGTCCTACTGTGTCTCCTGTGTCACGGTGT GATTGATATGGGAATCGCAGTTTTGTGGGTTTGGCTTAGAGCTAACCCTA TCTTCAAACACGAGTCCTTTGAGGCAAGTGATAAGATTAGGGTGGTCATG TTGGGTTTTCTTATCTTGTATGACACTTCTCTATCTTGTTTGGCCATGGA ATTGCTGATATCCAAACCAAATCGGGCCTCAGAGTAACGACAACTGGACA ATGGTAGTGACTCCAAATACATCGCAGACTAATTCAGAGAACCACAAAAG CATCCAACGTGCCGAAACGTTCTCCAATATTTTATATCTGATGTGCCTTG TGCCAGAACCGAGCTTTGTACTTTATCCCACTGCAATTCTACCTATTGAG TCTTTCTCCACCCCACCCTGTCTTCTGTTGTGGCAGCCGTGTTTATCTAC TGCGTGCTTCTTCCTCTACATAGGTTTCTTTGGGATCCTGGACTTTTTCA CTCCATGTGTATGGCCTTACCGAATTGGTACCTCAAAGGAAGTGGTCCCT CAGTACATAAATGGAAAGCGTGTACGATACGCCATCTTCGGATACCTCAT GCCTCTGGTGGTAAGATTTGTAGCATTGGTGTCGCCAAATCAATCATGCA CGAAATAGCAATTGATCTCCAACTTTCCTTCTCTCGTTCGCTGTGGACTC TTTCGAGTTGTCTGACTTTGACCAATGATGTTCTTCTCCTGTGTAATTAT GCTGCTTTTTCGCACCTGTACAAGTTCAACTCATCTTACTATTAGCGATT TACATCCACCTTGGTTGGCCGGTCCTTTCCGTCCGCCCTTCCTACCTGCC AGCCTACATCATAAACCATATCCCCCTTTTGTGTCAACACTCCGCTCTCG CTCGACCTGCACCTCACTTTCTCTTTGCACCGATGCATTGACCCTCTGGC ACGTGACACATCGCTATCCAGTCCCAATCGCTCTAGCTTACTGCAATAAA TTGTCACCCTTTACCATGTGCAGCGTACCGGTGTATGGAAAACTCGTACA CTAAGGTTGCTGGCCTTTTAAATCTTGGAGGTAGTGAGCATTTTGTCACC AAAATGTACCCAACTTTTCTCAGGATCGGGATTTGGCAGGTTTGTTATGT AGTGGATAACTCCTGATTTTCTTCCATTTATTGAACAGTTCAAGCATAAA TTCAAATAGCAGTAGTAGTACATTCCAGTAGTACCTGAAAGAAAAAAACA ACAATGAATGCTGCAATTGTCACCATGCCTTGCCATTCACCCAATTCATC TTATGTGGTTGTGATGTGTTTTAGGCATTTGACCTCGCCTTCCCACGGCG TGTTCTTCCCGAGGAGGCTCCTTCTGCCAGGCGTCTAGTGCTGGAGGTTG TGGGTGCAATTGCTGTGTATGACATAACCTTCTTCTTATGGCATGTTACT CTGCACCAACACCCCAAACTATATAAAAAAATCCATGCCAAACATCATCA GAAATTGGTGCAGCGGGCACCCGAGGTGAAGAATGTGTGCGCTCGTTTTT GTAATTGTTCTTTTTTAGATAAATTAACATCAAAAACCATCAACACCTGC GGCAGTGCGGAACAGAGATGCCATCTGTGCACATAAGTGTGGTTCGTATG CATGTTCATGGTGTTGCCAACAAGTCTTTTATGCAGATCCCTCGCAAAAC AGTCACTTGGGCACATTTGTGTGGATGCATGTGTGTGCAGTTTGTGTTTC CCGTTCCAATGCCTGTGGGAACCTGATCGAGCTTGTAGCATGTGTGGAAG GAGGCCATGTGATGTACTCGAGGTTCTAATATTTTTTTATCGTTTGGCAA TATCTATAGTCCACCCAATTGCGGCTGACCCTAGCAACTGCACTAACATG CCCTTACTTATGTCTGCAGTCAGTGAGGCATACATTTGTGGATGGTACAA TGGATGTTATGTGCTCCATCTTCGCCCTCAATGTGCTGCACTGTCATCCC CTGTCACGTGCCCTGTATGACGTGGTGATAATATGGCTCATCACTGAGTT GCATGCTGGGTGAGAAGCAGCCCTGTTGGCGCAGTCACATAAATTTCTGG AATTTGCGTGTGATTCCTACATGTGCTTCTTCTTGTATTGCCAGGCATAT AATACAGTATACTCTCTTCAAGAAGCATTCCTAATCCAGCATAGTGATGA CAACCCTACGCCTTACATACCGTGTTGATGTAGAGGAACACACTTGAAGT GCTACAGGACGACTTATGTAAGGAAGGGTAAGGTGTCCATTCTCCACATT GTATGATTCATCCTCTCTCGCTCAAGTATGCCTTACTGTCATCAAGAGAG TACGAGGTGCAAATACTTCACAGTTTCTTCTGTGTTAGGATCACACACTC ATACACACACATACATACACGTCCCCTCCTCTCTCAGATACGATTTCCCT TGGCAAGTGCATAACCTGCTTCCTTTTGGCCTGATGGGTGGCCCGCCCCG CCATGATCTCCACCACCGTTCTGGAAAGGTGTACATGCAAAAGTTTGGAA CGTACCTTGACGAGCTCTTTGGTTTTGTCCCCAACAAAGGACTCAAGCTT GACAACATCAAACACCAATGACAGGGAAAGTGGAGGGGGTGCAATTAGAG GGTCTATAGGACTGTGGGAGTGGTGAGGGCATTCGAGGGATGGGGTTGAT ACACAAGTTTTGGATACTAGTCTATATTTTACTATGAAGTACAGTCTTCG GAGTATCAAAGGTGAGGAGGATGGGTGAAAGCTGCATCATGCGGTTTTGT CACATGACCGCCGAAATGTTTTTGATTATACCTTGCGCCCCCAACCCCTT CCCACCTCGAGAAGTTGCACAACATATGAAACTAATTTGTGAGTAAGTGC TTGAATCCCTTTATGCAAGTTTTATGTTTTGCCGTCTACACATTTGTACT CTACTCTATTTTCAGGATGTGTCCAGTTCAGCACTTTGGAGGTTTGAGGG GCTTCAGAAAGTAGGTACATGTGTCCACATTTTGGGGTTCCAATACTCCT GTCCTATTGTAGGTATCATGTGATCGCTCTAACATAGAGATAACCAAGGT GTTTCCCAAAAAATCGCCATTTGTGTCATCCCATTTTTCTCGTTTTTTGG GGTAAACAACATACTATTTGTGCAGTCCTCAAAATTTCTTGCCATTTTAT ATGGTTTTCGGAAAAACTACGGCGTTCCACTTGTGTGAGCTTGGAGATAT CGGAAGTATGACCCAAAATCGTATAGACTTTATAAGGCCTAAGTTGGAAA AGTGGAAAGTGAAACTTGCACTAATGTAGTACAACATGTTAGGGAGCAAA AATTACATCCTTGCCTTATCCCTAAACTTGAAGCTGCCACGCAGACCCAG ATGATTTCCTCATTCAATTCCTGCTTTTGGTAGGTGAGTTTTTGACCAAA ATATCTGGAGCAGCTACCAACATCTACATGAAACAGTACACAGAACTTTC ATAGTGTATTGTAGGAGGGTGCAGTAGTGCAGTTTCCTTCCTTAGAGCGG AGCAATGCAGTGGAGGTACATGCTGATGCCAGAGGTATGCTAGTGCTGGC AAGGCAAATAGTAGTGATAACCCAAAAAATAGTGCATGTGAGCTGCGTGT CTTGTGGCTTACATGAAAGACACATAGTATGTCAAGCCATGCCAATATTC AAACACAACATAAGGTTGAATGAACTCCATCTTTGTGCGGTAAGTGCTGC ATCGGACATTTTTTTTTATTACCCAGATTCTATATTCCTGCAAGCCAGCC TTGGGAAAATGTTGGGAAACTTTCTTGTGCGCAGGTAACACAGGACACAT CTGTTTCGATGATATGTTCACGTAACAGCAGATTTCAAAAATTGATGGAG CTTTTCATTGAGGATGAGCTTGACCCAAATTGAGGCTCGAAGTATCTGGG AGGGGGTGGCGGCTGTCCATTTGGGGTCAATTTTTTTATGTTGCGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10729:977..5472+

>mRNA_C-tenellus_contig10729.1.3 ID=mRNA_C-tenellus_contig10729.1.3|Name=mRNA_C-tenellus_contig10729.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=1128bp|location=Sequence derived from alignment at C-tenellus_contig10729:977..5472+ (Choristocarpus tenellus KU2346)
ATGTTTGACATATTATTGAAGAATGCTATTGTTACAGTATGGGTATGTTC
GAGGTTGCTTCTCCTTCACAGCCTTCCCCAGCCCCAAACGCCGAGAAAGA
GAGAACGCCTTCTAGTTTGTCCTACCAGCCCCAATATTCTTTGTGGATTG
TGTTTGTCAAGATCCTCGAACCCCAGATTCAACTATAGACTGATATTTGT
TCAACATACACGAATATACCTAACAACCGGGGGTATACCTGCAATGGAAA
ATGGAAAGCGTAAAGAGCATGGGGTCCCCGGATGGCACACACAGCAAAAT
TTCTGCCGCGTCGTTGCCCTGGCGATTGTCCTACTGTGTCTCCTGTGTCA
CGGTGTGATTGATATGGGAATCGCAGTTTTGTGGGTTTGGCTTAGAGCTA
ACCCTATCTTCAAACACGAGTCCTTTGAGCCGTGTTTATCTACTGCGTGC
TTCTTCCTCTACATAGGTTTCTTTGGGATCCTGGACTTTTTCACTCCATG
TGTATGGCCTTACCGAATTGGTACCTCAAAGGAAGTGGTCCCTCAGTACA
TAAATGGAAAGCGTGTACGATACGCCATCTTCGGATACCTCATGCCTCTG
GTGGCATTTGACCTCGCCTTCCCACGGCGTGTTCTTCCCGAGGAGGCTCC
TTCTGCCAGGCGTCTAGTGCTGGAGGTTGTGGGTGCAATTGCTGTGTATG
ACATAACCTTCTTCTTATGGCATGTTACTCTGCACCAACACCCCAAACTA
TATAAAAAAATCCATGCCAAACATCATCAGAAATTGGTGCAGCGGGCACC
CGAGTCAGTGAGGCATACATTTGTGGATGGTACAATGGATGTTATGTGCT
CCATCTTCGCCCTCAATGTGCTGCACTGTCATCCCCTGTCACGTGCCCTG
TATGACGTGGTGATAATATGGCTCATCACTGAGTTGCATGCTGGATACGA
TTTCCCTTGGCAAGTGCATAACCTGCTTCCTTTTGGCCTGATGGGTGGCC
CGCCCCGCCATGATCTCCACCACCGTTCTGGAAAGGTGTACATGCAAAAG
TTTGGAACGTACCTTGACGAGCTCTTTGGTTTTGTCCCCAACAAAGGACT
CAAGCTTGACAACATCAAACACCAATGA
back to top