mRNA_C-tenellus_contig1072.9.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1072.9.1
Unique NamemRNA_C-tenellus_contig1072.9.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1072.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1072contigC-tenellus_contig1072:6865..7587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size146
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789145.8296244-CDS-C-tenellus_contig1072:6866..69371680789145.8296244-CDS-C-tenellus_contig1072:6866..6937Choristocarpus tenellus KU2346CDSC-tenellus_contig1072 6867..6937 -
1680789145.8427851-CDS-C-tenellus_contig1072:7514..75871680789145.8427851-CDS-C-tenellus_contig1072:7514..7587Choristocarpus tenellus KU2346CDSC-tenellus_contig1072 7515..7587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1072.9.1prot_C-tenellus_contig1072.9.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1072 6867..7587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1072.9.1

>prot_C-tenellus_contig1072.9.1 ID=prot_C-tenellus_contig1072.9.1|Name=mRNA_C-tenellus_contig1072.9.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=48bp
GTIPESLGNLFSLTYLDLRINKFSGRIPESLGNLSALTYLDLRRNKFS
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mRNA from alignment at C-tenellus_contig1072:6865..7587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1072.9.1 ID=mRNA_C-tenellus_contig1072.9.1|Name=mRNA_C-tenellus_contig1072.9.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=723bp|location=Sequence derived from alignment at C-tenellus_contig1072:6865..7587- (Choristocarpus tenellus KU2346)
GGGACCATCCCGGAGTCACTGGGCAATCTCTTCTCTCTCACGTACCTAGA
TTTGCGAATAAATAAATTTAGCGGTGAGTGTGAAGTTCGATATTTGTTGA
ATTTGAAAATATCTCGTTTCTTTTGGTTTCCTGGTAAAGTACCCTAGTGT
GGTCAAAAATGTATTTCTTTGATGTGTGCCCTAGGAATGTTTGACTGGTG
CAATATAGAGATGATTGAATCCAATTTCGTATCAGTACTAGAGCAAGACG
ATTATTGGTTTGATACTGATTAGTGTGACAATTAGATATTTTGACTGGAG
AGTGATGTATGTAGTGCGCATGAGGGTTGTTGTGTACCTTGAGGTGATGT
TTGTATTAGACAAGAGTGTAGGCATTTTAGTAGTGGTTGTATTAGTCAGG
GCAGGATAGTTGAGGAGGTATTTTGATTTGTTGTAGGGGTCTTTTTTTGC
TCTCGTTTGTGTATGGCTTTGTTGTGGATAGGTTGGTTGAAGATGTTTTG
TTAGTCTGAGGATTAATGGTGATTGAGAATTTTTGATGGTAAGAATAGAT
TTGTTTTTTGTTTTGCATGCTTTGTCACTCCACTTTTGACTAATGGTTGT
TTGTTTATGAGACCTGATTGGCTTCTGTAAATCAACTCTTTTTCTCACAG
GGAGAATCCCGGAGTCACTGGGGAATCTCTCTGCTCTCACGTACCTAGAT
TTGCGAAGAAATAAATTTAGCGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1072:6865..7587-

>mRNA_C-tenellus_contig1072.9.1 ID=mRNA_C-tenellus_contig1072.9.1|Name=mRNA_C-tenellus_contig1072.9.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=144bp|location=Sequence derived from alignment at C-tenellus_contig1072:6865..7587- (Choristocarpus tenellus KU2346)
GGGACCATCCCGGAGTCACTGGGCAATCTCTTCTCTCTCACGTACCTAGA
TTTGCGAATAAATAAATTTAGCGGGAGAATCCCGGAGTCACTGGGGAATC
TCTCTGCTCTCACGTACCTAGATTTGCGAAGAAATAAATTTAGC
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