mRNA_C-tenellus_contig1069.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1069.4.1
Unique NamemRNA_C-tenellus_contig1069.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1069.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1069contigC-tenellus_contig1069:6037..6838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size802
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789144.0174725-UTR-C-tenellus_contig1069:6036..63021680789144.0174725-UTR-C-tenellus_contig1069:6036..6302Choristocarpus tenellus KU2346UTRC-tenellus_contig1069 6037..6302 -
1680789144.0451589-UTR-C-tenellus_contig1069:6707..68381680789144.0451589-UTR-C-tenellus_contig1069:6707..6838Choristocarpus tenellus KU2346UTRC-tenellus_contig1069 6708..6838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789144.0313168-CDS-C-tenellus_contig1069:6302..67071680789144.0313168-CDS-C-tenellus_contig1069:6302..6707Choristocarpus tenellus KU2346CDSC-tenellus_contig1069 6303..6707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1069.4.1prot_C-tenellus_contig1069.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1069 6303..6707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1069.4.1

>prot_C-tenellus_contig1069.4.1 ID=prot_C-tenellus_contig1069.4.1|Name=mRNA_C-tenellus_contig1069.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=135bp
MTAREEHPFLESKTQSAETSRSGAWGRNRLYARESTGKSTMEKAGDLDIH
YYSRCLSQVDVTLADSKVEGLQQHRFAFARHRRLREASLREAHMLQVDLT
ELLADDILEDMTTMCCQEVEDVLANLAEQLVNEV*
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mRNA from alignment at C-tenellus_contig1069:6037..6838-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1069.4.1 ID=mRNA_C-tenellus_contig1069.4.1|Name=mRNA_C-tenellus_contig1069.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=802bp|location=Sequence derived from alignment at C-tenellus_contig1069:6037..6838- (Choristocarpus tenellus KU2346)
CGTAGTAGTAGATTCTGGAGATTTTTCTTGCGTAGGTCGATATAGCCGCC
CCAGTAAATGCCTGTGGGGTGTTCGGAGGGGAGTTGTATGGGTTGATAGA
ACAAGGGAGTAGTTGGATAGAATCAAAGGTGATGACTGCAAGGGAAGAGC
ACCCATTCCTGGAAAGCAAGACTCAGAGTGCCGAAACGTCACGGAGTGGT
GCCTGGGGAAGAAATAGGTTGTACGCAAGGGAGAGTACTGGAAAAAGTAC
CATGGAGAAGGCGGGTGACTTGGATATTCACTACTATAGTAGGTGCTTGT
CACAGGTGGATGTCACACTTGCCGACTCCAAGGTGGAAGGTTTGCAACAG
CATCGATTTGCTTTCGCAAGGCATCGCAGGTTGCGCGAGGCATCCCTCAG
GGAAGCTCATATGTTGCAGGTGGATTTAACTGAACTTCTCGCAGACGACA
TATTGGAGGATATGACTACAATGTGCTGCCAAGAAGTTGAAGATGTGTTG
GCGAACTTGGCCGAACAACTGGTGAATGAAGTGTAGTGCTTAGCTTAAGT
AATTCTCGTGCACGTTTCTAGTCGTATATGCGCGCGTCTTCGCATATGTC
TTCATTCACCATGATGTTGGCATCTGCAACACATTCCAAGACCATAAAGC
CCTGCTCCTTCTTTGATCTCTCCTTCTTGACCCCTTCCTGTTCACCTTTA
CTGCAGCCATGCACAACATTAGCTCAGCTGATCTCTCACTTGATACTGCT
TTACGAGTTCATTAAAATACATGAGGCAGACTAAACTGAAGCTCTATTCA
AT
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Coding sequence (CDS) from alignment at C-tenellus_contig1069:6037..6838-

>mRNA_C-tenellus_contig1069.4.1 ID=mRNA_C-tenellus_contig1069.4.1|Name=mRNA_C-tenellus_contig1069.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=405bp|location=Sequence derived from alignment at C-tenellus_contig1069:6037..6838- (Choristocarpus tenellus KU2346)
ATGACTGCAAGGGAAGAGCACCCATTCCTGGAAAGCAAGACTCAGAGTGC
CGAAACGTCACGGAGTGGTGCCTGGGGAAGAAATAGGTTGTACGCAAGGG
AGAGTACTGGAAAAAGTACCATGGAGAAGGCGGGTGACTTGGATATTCAC
TACTATAGTAGGTGCTTGTCACAGGTGGATGTCACACTTGCCGACTCCAA
GGTGGAAGGTTTGCAACAGCATCGATTTGCTTTCGCAAGGCATCGCAGGT
TGCGCGAGGCATCCCTCAGGGAAGCTCATATGTTGCAGGTGGATTTAACT
GAACTTCTCGCAGACGACATATTGGAGGATATGACTACAATGTGCTGCCA
AGAAGTTGAAGATGTGTTGGCGAACTTGGCCGAACAACTGGTGAATGAAG
TGTAG
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