mRNA_C-tenellus_contig10646.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10646.2.1
Unique NamemRNA_C-tenellus_contig10646.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10646.2.1 vs. uniprot
Match: D8LHG8_ECTSI (BEACH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.380e-39
Identity = 119/299 (39.80%), Postives = 149/299 (49.83%), Query Frame = 1 
Query:    1 VGREEVIVPLVLEGVFDHALPILQPVLAQRGGPGATVLGFRVVLEITFLLRSLLKTLSPRTLEAFYAGRRRL-----PTQNRNVDGEGHSALGERKEEEISSIPWLLLSMPLPEPV----PGVDLPWSADKSRRKDWDDSSRDITRQGEGAEAD-VENIVEGDEDVKDRHGGEXXXXXXXXQPAPLSRDEAGEGGLMCGRFICHMEVVRLLALTAMHISTLEDHPDLTDGSVVHSGNITEGSW---GVGVDSIFLKVAEEFFDSFNRAYGGLVFSSPTMVAALRLARELFSPLASLFGY 858
            +  EEV VPLVL  VF   LP L PVLAQRGGP  T  GFR VLE+T LL  LL TL P T+  FY G R       P+ + +  G   +A+  +   E  S+PWLLL+MPLP+PV     G D     D+S       S R   R+  G + D   +   GD        G          PA  + +   +   +  RF+CH+E  RLLA TAM                   G + +G W   G    S  L+ AE FF +F R Y GL  SSPTMVAAL+LA+EL +PLASLFG+
Sbjct: 1434 ISSEEVTVPLVLSRVFHQVLPSLAPVLAQRGGPSTTATGFRSVLEVTSLLGRLLPTLCPETISHFYVGLRPATALSPPSFHADATGTEAAAVTPQAAAEHHSVPWLLLAMPLPQPVFREAGGRDSNLWTDRS-------SDRSTIRRSPGRQEDGFLSPTTGDGGGSAHVDGGRNHPEFSGGPAGGAAEGVCDDADVSTRFVCHVETARLLATTAM-------------------GVLGDGGWEEEGREECSRVLQAAEAFFAAFGRLYCGLSSSSPTMVAALKLAKELHTPLASLFGF 1706
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10646.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHG8_ECTSI1.380e-3939.80BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10646contigC-tenellus_contig10646:2180..4687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHG8
PFAMsBeach,Pkinase,WD40
Model size858
Max annot lvl2759|Eukaryota
KEGG koko:K17601
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.26e-40
EggNOG OGsKOG1786@1|root,KOG1786@2759|Eukaryota
Descriptionaggrephagy
Cds size858
COG categoryT
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789141.9893339-CDS-C-tenellus_contig10646:2179..22641680789141.9893339-CDS-C-tenellus_contig10646:2179..2264Choristocarpus tenellus KU2346CDSC-tenellus_contig10646 2180..2264 -
1680789142.0006897-CDS-C-tenellus_contig10646:2882..31831680789142.0006897-CDS-C-tenellus_contig10646:2882..3183Choristocarpus tenellus KU2346CDSC-tenellus_contig10646 2883..3183 -
1680789142.0107112-CDS-C-tenellus_contig10646:3381..35741680789142.0107112-CDS-C-tenellus_contig10646:3381..3574Choristocarpus tenellus KU2346CDSC-tenellus_contig10646 3382..3574 -
1680789142.0280664-CDS-C-tenellus_contig10646:3640..37971680789142.0280664-CDS-C-tenellus_contig10646:3640..3797Choristocarpus tenellus KU2346CDSC-tenellus_contig10646 3641..3797 -
1680789142.0407465-CDS-C-tenellus_contig10646:4565..46871680789142.0407465-CDS-C-tenellus_contig10646:4565..4687Choristocarpus tenellus KU2346CDSC-tenellus_contig10646 4566..4687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10646.2.1prot_C-tenellus_contig10646.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10646 2180..4687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10646.2.1

>prot_C-tenellus_contig10646.2.1 ID=prot_C-tenellus_contig10646.2.1|Name=mRNA_C-tenellus_contig10646.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=286bp
VGREEVIVPLVLEGVFDHALPILQPVLAQRGGPGATVLGFRVVLEITFLL
RSLLKTLSPRTLEAFYAGRRRLPTQNRNVDGEGHSALGERKEEEISSIPW
LLLSMPLPEPVPGVDLPWSADKSRRKDWDDSSRDITRQGEGAEADVENIV
EGDEDVKDRHGGEGEGEGEGDQPAPLSRDEAGEGGLMCGRFICHMEVVRL
LALTAMHISTLEDHPDLTDGSVVHSGNITEGSWGVGVDSIFLKVAEEFFD
SFNRAYGGLVFSSPTMVAALRLARELFSPLASLFGY
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mRNA from alignment at C-tenellus_contig10646:2180..4687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10646.2.1 ID=mRNA_C-tenellus_contig10646.2.1|Name=mRNA_C-tenellus_contig10646.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2508bp|location=Sequence derived from alignment at C-tenellus_contig10646:2180..4687- (Choristocarpus tenellus KU2346)
GTTGGAAGAGAGGAGGTTATCGTGCCACTAGTTCTAGAAGGAGTGTTCGA
TCATGCCCTTCCAATCCTACAGCCTGTCTTGGCGCAGCGGGGTGGGCCGG
GGGCTACTGTGCTGGGCTTCCGGTGAGTGCTTTTTCTTGCCATTGCCACA
TCCTGAGGGCATAGCAGTCTCTTGCTCACCCCTTCCCCCACTTGACTGGG
GAAGTGTCCCCATGCCTTCGTCACATACACCCTATCACTGATGATATCTT
CCACCAGTATTTTCAGGAGGCTAACCTGTGCAGGTGTTTTTTTTTTTTTT
AGTTTGGGGTATGGGCTGAATGCCACCTGAAGATGTGTGAGCAAGGTGTT
TTGAGCATCCGAGATTCTAAACAGTACATGAGTGTGCGCTATCCTGCTGA
GCGTTTTTTTGTTTGTTATTTTTTTCTGCTTGGAACGATTATTGTATCCC
CTTGTTTTTGTGCAAGTATAAGTGAAACTGCTTGTACTACTACAATTTTG
TTTTGTTTTGTTTTGGTAAGGGTTGCGGAAACTTATTGATGTGTAGGTTA
TATTCCTGTCTTTATTTTTATCCATCACCCCCCTCTACTTCCTTCTGTGT
TTGAAATTGCACTTTAAAGCAAGCCCTGCGCCTGCGCTTTTTTGATTTTT
TTTTTTCAAATGTGTTTGTTCCTTGTCCGTGTATTGGGAGCTGTGCCAAG
GGCAAAATATAGCTCATGTGAGGTTTATCGCCGCCAACATCCTATACCTG
CCTTCCTCTACCACTCCCACCATCATCTTTCTCACCCCAACTCACACACA
CCTCACCACCAGTACCAACCCAAACCATATCTTCCTTCCCTCCTCGGATC
TTCCCTTTCACTGGAACCTCTCCCCTGGTGCTGTAAAAAGGGTTGTCCTG
GAGATAACATTCCTACTGCGAAGTCTGCTGAAGACTCTCTCCCCTCGAAC
ACTTGAAGCTTTCTACGCTGGGCGAAGACGTCTCCCGACTCAAAATCGAA
ACGTTGATGGGGAGGGGCACAGTGCTTTGGGGGAGAGAAAGGAGGAGGTT
CCAGGTGATGGGGATGAGATTTGTGGTGGGCTGGCAAAGGAGGGGCGAGA
GATGAGATTTAAGGAAATTTCCAGCATCCCGTGGTTGCTGTTGTCTATGC
CACTACCTGAGCCTGTTCCAGGAGTGGATCTTCCTTGGTCGGCTGATAAG
AGCCGTAGAAAAGACTGGGATGATAGTAGCAGGGATATTACTAGACAGGG
GGAGGGGGCAGAGGCTGATGTGGAGAATATTGTCGAAGGAGATGAGGATG
TGAAGGGTAGACCGATGGTCAATGAGGATGAAGATATCCTTGAGGAGGGT
GGAGAAGGCAATTTGGTGAATGTCAATAATCAGGGGGCGCAGTGGGAGGA
TGCGCTCAAGGGCTTTGAAGGTTTGAAGGGAGTTGATGACTCTGTTGTTG
GGATGGAGGAGGTTGGTGATGTGATAGGAATTTCAGTGACAGAAGATGAA
ATAGACAGACATGGAGGGGAAGGGGAAGGAGAAGGAGAAGGGGATCAACC
GGCACCTCTTTCCAGGGATGAGGCTGGAGAAGGGGGTCTCATGTGCGGAC
GCTTTATATGCCACATGGAGGTTGTGAGACTGCTCGCCCTCACTGCCATG
CACATCAGTACTCTAGAAGATCATCCGGACTTGACAGATGGGAGCGTGGT
CCACAGTGGCAACATTACTGAAGGGAGCTGGGGTGTGGGAGTAGATAGTA
TATTTCTGAAGGTTGCGGAGGAGTTCTTTGATTCATTTAATCGTGCTTAT
GGAGGGTAAGTGGGGATGTGGAGGAAGGAGTAGTTGGAATGAAATGGGGC
AAAGGAAAGTAGGGAAGAGGTGGAAGTGGTATTTTTGGAGTATTGTGGGG
GTTGTTGATTGTGCGCTTAGAAGAAACAGGTTGGGGTTAGGGTTTTTTCC
TTGCCTGCTGGAAGAATGGAGGCAAATTGGGATTTGGAGTTTGAAAAAGG
ACTGATGGGAGGTGGGATGATACCGTGATTTAGAGCTTGGTGATATTGTT
TGAGGATGTGATGTATTCCTATTATACTGTTAATAATCAACTTGAAATTT
TGTCAGTTGGCCGACCAAACTGCCATAACCTTATCAATGCCTCTTGGTTA
GTGATGGGAGCGGGAGTGGGTTTGGTGTGGTGGGTAAACAAGGATCTGTT
GGAGAGGTTAAAGGTGACTTAGAGAGGTCATGTGGGTTGTGGGGGTCTAT
AGTTGTGTAGGGGCTATTGTTGCATGTGATAGATGTTATCTTGGCTCTAG
ATAGTGGTTCGATTTTTTTTCAAGTGTTTTTTACTTGCATGGCTTGCTTA
CTTACTTCACAAGATGGCCTATGCCATTTTTTTCCGTGTTTCCATGCTAT
TGCGGATTCTGGAACTCATTCAGATTGGTCTTCTCCAGCCCAACCATGGT
GGCGGCACTACGACTGGCCCGAGAGTTGTTCAGCCCCCTGGCCTCACTGT
TTGGGTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig10646:2180..4687-

>mRNA_C-tenellus_contig10646.2.1 ID=mRNA_C-tenellus_contig10646.2.1|Name=mRNA_C-tenellus_contig10646.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=858bp|location=Sequence derived from alignment at C-tenellus_contig10646:2180..4687- (Choristocarpus tenellus KU2346)
GTTGGAAGAGAGGAGGTTATCGTGCCACTAGTTCTAGAAGGAGTGTTCGA
TCATGCCCTTCCAATCCTACAGCCTGTCTTGGCGCAGCGGGGTGGGCCGG
GGGCTACTGTGCTGGGCTTCCGGGTTGTCCTGGAGATAACATTCCTACTG
CGAAGTCTGCTGAAGACTCTCTCCCCTCGAACACTTGAAGCTTTCTACGC
TGGGCGAAGACGTCTCCCGACTCAAAATCGAAACGTTGATGGGGAGGGGC
ACAGTGCTTTGGGGGAGAGAAAGGAGGAGGAAATTTCCAGCATCCCGTGG
TTGCTGTTGTCTATGCCACTACCTGAGCCTGTTCCAGGAGTGGATCTTCC
TTGGTCGGCTGATAAGAGCCGTAGAAAAGACTGGGATGATAGTAGCAGGG
ATATTACTAGACAGGGGGAGGGGGCAGAGGCTGATGTGGAGAATATTGTC
GAAGGAGATGAGGATGTGAAGGACAGACATGGAGGGGAAGGGGAAGGAGA
AGGAGAAGGGGATCAACCGGCACCTCTTTCCAGGGATGAGGCTGGAGAAG
GGGGTCTCATGTGCGGACGCTTTATATGCCACATGGAGGTTGTGAGACTG
CTCGCCCTCACTGCCATGCACATCAGTACTCTAGAAGATCATCCGGACTT
GACAGATGGGAGCGTGGTCCACAGTGGCAACATTACTGAAGGGAGCTGGG
GTGTGGGAGTAGATAGTATATTTCTGAAGGTTGCGGAGGAGTTCTTTGAT
TCATTTAATCGTGCTTATGGAGGATTGGTCTTCTCCAGCCCAACCATGGT
GGCGGCACTACGACTGGCCCGAGAGTTGTTCAGCCCCCTGGCCTCACTGT
TTGGGTAC
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