mRNA_C-tenellus_contig10642.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10642.1.1
Unique NamemRNA_C-tenellus_contig10642.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10642.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10642contigC-tenellus_contig10642:3550..3932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size383
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789141.9330657-UTR-C-tenellus_contig10642:3549..35781680789141.9330657-UTR-C-tenellus_contig10642:3549..3578Choristocarpus tenellus KU2346UTRC-tenellus_contig10642 3550..3578 +
1680789141.9583647-UTR-C-tenellus_contig10642:3899..39321680789141.9583647-UTR-C-tenellus_contig10642:3899..3932Choristocarpus tenellus KU2346UTRC-tenellus_contig10642 3900..3932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789141.941602-CDS-C-tenellus_contig10642:3578..38991680789141.941602-CDS-C-tenellus_contig10642:3578..3899Choristocarpus tenellus KU2346CDSC-tenellus_contig10642 3579..3899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10642.1.1prot_C-tenellus_contig10642.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10642 3579..3899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10642.1.1

>prot_C-tenellus_contig10642.1.1 ID=prot_C-tenellus_contig10642.1.1|Name=mRNA_C-tenellus_contig10642.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MNTLRTLFLDVLKCQDQVLEGLQELARVSVTNRTLDMGEIEAQFHKLAKM
GNAASACDRVHLMREALENCMVNCHLDGVFHLNFGDETESWQPGATNCCL
GRSSQG*
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mRNA from alignment at C-tenellus_contig10642:3550..3932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10642.1.1 ID=mRNA_C-tenellus_contig10642.1.1|Name=mRNA_C-tenellus_contig10642.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=383bp|location=Sequence derived from alignment at C-tenellus_contig10642:3550..3932+ (Choristocarpus tenellus KU2346)
TGCGTGTCCACCTAAAGGATACCGTGAAGATGAATACCTTGCGTACTTTA
TTTCTAGATGTGTTGAAGTGCCAGGACCAGGTTTTGGAAGGTCTACAAGA
GTTGGCGAGGGTCTCGGTGACCAATCGAACCCTAGATATGGGAGAGATCG
AGGCCCAGTTCCATAAACTTGCCAAGATGGGAAACGCAGCCTCTGCCTGT
GATCGGGTGCATCTCATGAGAGAGGCACTAGAGAACTGCATGGTCAATTG
TCATCTGGATGGAGTCTTTCACCTCAATTTTGGGGATGAGACCGAAAGCT
GGCAACCTGGTGCGACCAATTGTTGTCTGGGGCGATCCTCGCAGGGATAA
GACTTGTGGATATCAGGGACCAGGTGCTTGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10642:3550..3932+

>mRNA_C-tenellus_contig10642.1.1 ID=mRNA_C-tenellus_contig10642.1.1|Name=mRNA_C-tenellus_contig10642.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10642:3550..3932+ (Choristocarpus tenellus KU2346)
ATGAATACCTTGCGTACTTTATTTCTAGATGTGTTGAAGTGCCAGGACCA
GGTTTTGGAAGGTCTACAAGAGTTGGCGAGGGTCTCGGTGACCAATCGAA
CCCTAGATATGGGAGAGATCGAGGCCCAGTTCCATAAACTTGCCAAGATG
GGAAACGCAGCCTCTGCCTGTGATCGGGTGCATCTCATGAGAGAGGCACT
AGAGAACTGCATGGTCAATTGTCATCTGGATGGAGTCTTTCACCTCAATT
TTGGGGATGAGACCGAAAGCTGGCAACCTGGTGCGACCAATTGTTGTCTG
GGGCGATCCTCGCAGGGATAA
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