mRNA_C-tenellus_contig10633.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10633.1.2
Unique NamemRNA_C-tenellus_contig10633.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10633.1.2 vs. uniprot
Match: D8LQ40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ40_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.410e-38
Identity = 112/302 (37.09%), Postives = 154/302 (50.99%), Query Frame = 1 
Query:   58 YDYGFVGGKDSSYDDDDEDYEVDISGMNVSPEILAMLGASEEVINAKKTEIEEVASTWIPPKESGLEHSDVIANHNEIAL----LQEGGADKRNLKVVRVMNKVGEYSNSGNNRNYGSPEESTGATTTLLEPLQITTINVKGKHGFESVPEIKKSQLSQEDIDDSTGSDCSEASASWDELSMVEGMPWCMVNSDDEIEEGTLEFVSPNLHKILGFNPPGK-KEVDTGNGSPSGSTWTPPTFSGLMNSKPIVTLQQLTVNGGSGMQVQMKDRNLPRQDSEGRNEHEDDESSWDSDEDGEWDYK 948
            YDYGF   +D         YEVD + MNVSPEIL MLGASEEVI AK+ E+  V STW+PP E+GLEHS  IA+   +A+       GG  +R  K V   +K  E + +   R                       + VK  H  E VP+ ++S+L  +  D  +  D SE S  WDE S ++G  W    SDDE  E     +S NL   LG    G+    +TG+G      W PP+F+GL NSKP+ TL  L +    G++++ K + +   ++EG  E  D +  W S+E+G WDY+
Sbjct:   29 YDYGFAADEDXXXXXXXXXYEVDYASMNVSPEILRMLGASEEVIAAKEAEVSGVTSTWVPPTETGLEHSSAIADSAAVAIGGSGAPGGGGVERVFKAVGSFDKDAEDAAAAGER--------------------APVLKVKVAHAPEPVPKKRESKLPPKSEDSWSDDDGSEDS--WDEASAIDGHAWWESGSDDE--ELETAAMSHNLRVALGLATAGEVATAETGSGGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYK-KKMGEGEAEG-GEGGDGDEEW-SEEEG-WDYE 302
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10633.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ40_ECTSI2.410e-3837.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10633contigC-tenellus_contig10633:2403..3933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size948
Hectar predicted targeting categoryother localisation
Exons3
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789141.7963777-CDS-C-tenellus_contig10633:2402..27201680789141.7963777-CDS-C-tenellus_contig10633:2402..2720Choristocarpus tenellus KU2346CDSC-tenellus_contig10633 2403..2720 -
1680789141.805598-CDS-C-tenellus_contig10633:3151..36871680789141.805598-CDS-C-tenellus_contig10633:3151..3687Choristocarpus tenellus KU2346CDSC-tenellus_contig10633 3152..3687 -
1680789141.8140457-CDS-C-tenellus_contig10633:3839..39331680789141.8140457-CDS-C-tenellus_contig10633:3839..3933Choristocarpus tenellus KU2346CDSC-tenellus_contig10633 3840..3933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10633.1.2prot_C-tenellus_contig10633.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10633 2403..3933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10633.1.2

>prot_C-tenellus_contig10633.1.2 ID=prot_C-tenellus_contig10633.1.2|Name=mRNA_C-tenellus_contig10633.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=316bp
ESREDESEEEESEEEGDNEYDYGFVGGKDSSYDDDDEDYEVDISGMNVSP
EILAMLGASEEVINAKKTEIEEVASTWIPPKESGLEHSDVIANHNEIALL
QEGGADKRNLKVVRVMNKVGEYSNSGNNRNYGSPEESTGATTTLLEPLQI
TTINVKGKHGFESVPEIKKSQLSQEDIDDSTGSDCSEASASWDELSMVEG
MPWCMVNSDDEIEEGTLEFVSPNLHKILGFNPPGKKEVDTGNGSPSGSTW
TPPTFSGLMNSKPIVTLQQLTVNGGSGMQVQMKDRNLPRQDSEGRNEHED
DESSWDSDEDGEWDYK
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mRNA from alignment at C-tenellus_contig10633:2403..3933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10633.1.2 ID=mRNA_C-tenellus_contig10633.1.2|Name=mRNA_C-tenellus_contig10633.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1531bp|location=Sequence derived from alignment at C-tenellus_contig10633:2403..3933- (Choristocarpus tenellus KU2346)
GAAAGTCGAGAGGACGAGTCAGAAGAAGAGGAATCCGAGGAAGAAGGGGA
TAACGAATATGACTACGGGTTTGTCGGCGGTAAGGATTCCTCCTGTTGAC
ACAGTGTTTTTCCATCGTATTTCGTTTAAGAAGATACCATCCTTCTCCTG
TTGTTAAGCCAGGGTGCTTGGGAAACAGCTAGACAACCAACTCGAGGCAT
ACTATCATTCCTGCAATAATATTCAAATCCCACCTTCGCTCGGTAGATGA
TGATGATGACGAGGACTACGAAGTGGACATTTCTGGAATGAATGTAAGCC
CAGAGATACTAGCTATGCTTGGCGCAAGCGAAGAAGTCATCAATGCCAAG
AAGACAGAGATAGAAGAAGTCGCATCAACATGGATTCCTCCGAAAGAAAG
TGGTCTTGAACATAGCGATGTCATTGCTAACCATAATGAGATCGCTCTGC
TACAAGAAGGAGGTGCTGACAAAAGGAACTTGAAGGTGGTCCGTGTGATG
AACAAGGTTGGCGAATACAGTAACAGTGGCAATAATAGAAATTATGGATC
CCCCGAGGAAAGCACTGGAGCTACTACTACCTTGCTTGAACCACTCCAAA
TCACCACGATCAACGTGAAGGGAAAACACGGGTTCGAGTCTGTTCCAGAG
ATTAAAAAGTCACAGCTATCCCAGGAAGACATCGATGATAGCACAGGCAG
CGACTGCAGTGAGGCCAGCGCATCCTGGGACGAGTTGTCAATGGTTGAGG
GGATGCCCTGGTGTATGGTCAACTCCGACGATGTGAGTGGTCTAGCAAGG
ACTAGGTCTAAGTTGTGCTTCCAGCTTATGCAGTTGGCATATGTGCAGTG
GATGAGATTGGGAATGAGTCACTCGATTTCAACGTATCATACCACAGTCA
AGTATCAAGGAGTAGCTCAATCAATGTAATTTGACCATTATCAAAGGGGG
ACCTGACTAACAACCTGTAATCAATGACCAAAACGATATATGTCGTCACC
ATATTCTCAACTATTTTACTTCCCTAACTGACAAAATATGCTGAAAACAG
AATGTGACATATCTGGGGGTACTTGCTAACTCCACCTCCAGACCTGTGCA
GCCCCTATTAATGACAAGAATATAGGTTGTGCAGAAACACCACTCTCCCT
CTACCTATATTTCTTCTCCTTCTGGCCCCCCAAAACTCCCAATCATGATT
TTGATTCTATCAGGAGATTGAGGAGGGAACTCTGGAGTTTGTGTCTCCCA
ACTTGCACAAAATTTTGGGCTTCAATCCACCAGGAAAGAAAGAAGTTGAT
ACAGGCAACGGTTCTCCTTCTGGCAGTACATGGACCCCACCCACGTTTTC
AGGCCTGATGAACAGCAAGCCTATCGTGACATTGCAGCAGCTAACAGTTA
ATGGGGGCAGTGGGATGCAGGTGCAAATGAAGGATCGCAATCTTCCAAGA
CAAGACAGCGAGGGCCGGAACGAACATGAGGATGATGAGAGCTCTTGGGA
TTCTGATGAGGATGGGGAATGGGACTATAAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10633:2403..3933-

>mRNA_C-tenellus_contig10633.1.2 ID=mRNA_C-tenellus_contig10633.1.2|Name=mRNA_C-tenellus_contig10633.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=948bp|location=Sequence derived from alignment at C-tenellus_contig10633:2403..3933- (Choristocarpus tenellus KU2346)
GAAAGTCGAGAGGACGAGTCAGAAGAAGAGGAATCCGAGGAAGAAGGGGA
TAACGAATATGACTACGGGTTTGTCGGCGGTAAGGATTCCTCCTATGATG
ATGATGACGAGGACTACGAAGTGGACATTTCTGGAATGAATGTAAGCCCA
GAGATACTAGCTATGCTTGGCGCAAGCGAAGAAGTCATCAATGCCAAGAA
GACAGAGATAGAAGAAGTCGCATCAACATGGATTCCTCCGAAAGAAAGTG
GTCTTGAACATAGCGATGTCATTGCTAACCATAATGAGATCGCTCTGCTA
CAAGAAGGAGGTGCTGACAAAAGGAACTTGAAGGTGGTCCGTGTGATGAA
CAAGGTTGGCGAATACAGTAACAGTGGCAATAATAGAAATTATGGATCCC
CCGAGGAAAGCACTGGAGCTACTACTACCTTGCTTGAACCACTCCAAATC
ACCACGATCAACGTGAAGGGAAAACACGGGTTCGAGTCTGTTCCAGAGAT
TAAAAAGTCACAGCTATCCCAGGAAGACATCGATGATAGCACAGGCAGCG
ACTGCAGTGAGGCCAGCGCATCCTGGGACGAGTTGTCAATGGTTGAGGGG
ATGCCCTGGTGTATGGTCAACTCCGACGATGAGATTGAGGAGGGAACTCT
GGAGTTTGTGTCTCCCAACTTGCACAAAATTTTGGGCTTCAATCCACCAG
GAAAGAAAGAAGTTGATACAGGCAACGGTTCTCCTTCTGGCAGTACATGG
ACCCCACCCACGTTTTCAGGCCTGATGAACAGCAAGCCTATCGTGACATT
GCAGCAGCTAACAGTTAATGGGGGCAGTGGGATGCAGGTGCAAATGAAGG
ATCGCAATCTTCCAAGACAAGACAGCGAGGGCCGGAACGAACATGAGGAT
GATGAGAGCTCTTGGGATTCTGATGAGGATGGGGAATGGGACTATAAA
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