mRNA_C-tenellus_contig10618.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10618.2.1
Unique NamemRNA_C-tenellus_contig10618.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Match: D7FP71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP71_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 9.940e-77
Identity = 120/189 (63.49%), Postives = 140/189 (74.07%), Query Frame = 1 
Query:   13 SQRQTVEKRVWHELVAFFPRADAFHSSQGECHECHGDAETERQAKVTVKHLREQEIATPTLRGLFARKAGVPPSAMSPPP-SPGTAXXXXASGAPICPLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPPHVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLHP 576
            ++RQ V+KRVW ELV FFP A  F +   EC EC G    ER+A+  VK  REQEIA P LR L+ RK GVP +A+S P  +PG++    ++  P CPL PGIYHLLPRYWL  WR YVRDP+ P PR LDT+L LCEGHGLLLAPPHVE FL+GERR+LLGGLDP RSGCV EV+TPEEWDA+TL  P
Sbjct:  249 AKRQVVDKRVWRELVLFFPAAVPFRAESVECSECRGLCANERKAEEAVKRQREQEIALPVLRALYGRKTGVPSAALSTPRGTPGSSAGPPSAARPACPLLPGIYHLLPRYWLNAWRAYVRDPRAPSPRTLDTALLLCEGHGLLLAPPHVEEFLSGERRALLGGLDPDRSGCVCEVVTPEEWDALTLCWP 437
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BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Match: A0A835YTC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC4_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.210e-56
Identity = 103/238 (43.28%), Postives = 133/238 (55.88%), Query Frame = 1 
Query:   16 QRQTVEKRVWHELVAFFPRADAFHSSQGECHECHGD----AETERQAKVTVKHLREQEIAT-PTLRGLFARKAGVPPSAMSPPPSPGTAXXXXASGAPICPLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPPHVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLH-PCDFGVRFCVHPDSGEIAWNCKKCIHCDPCYIGELYVSRTPRKLSY 711
            +R+T++ R W  +  F+P A       GEC  C  +    A          K  R  ++A  P L  L  R+ GVP S +                A   PL PG+YHL+PR WL+ WR YVRDP  P PR LD SL LC+ HGLLL PPH E +L G+R  LLG LD  RSG V EV+T +EWDA++  + PCDF VRF + PD   +AW+  +C  CDPCY+ + Y +R PRKLS+
Sbjct:  182 RRRTLDGRSWRAIKVFYPAARDLRVRDGECARCGAERAAAAXXXXXXXXQEKERRSGDLAAVPALSQLCCRRGGVPTSHLVCGDMRLAIRLAHNLDALPPPLAPGLYHLVPRCWLSSWRTYVRDPGAPQPRPLDASLLLCDAHGLLLVPPHAEQWLRGDREKLLGALDTERSGYVCEVVTVDEWDALSERYGPCDFSVRFSIAPDGDAVAWSLPRCSRCDPCYVAQTYTTRVPRKLSF 419
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BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Match: A0A4D9CUZ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUZ8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 6.020e-48
Identity = 91/220 (41.36%), Postives = 129/220 (58.64%), Query Frame = 1 
Query:    7 VSSQRQTVEKRVWHELVAFFPRADAFH-SSQGECHECHGDAETERQAKVTVKHLREQEI-ATPTLRGLFARKAGVPPSAMSPPPSPGTAXXXXASGAPICPLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPPHVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLHPCDFGVRFCVHPDSGEIAWNCKKCIHCDP 660
            V  +R+ +EKR W  L  ++    AF  S+  EC +C      E++     +  R+ E+ A+P L  L+AR+ G PPS+ + PPSP ++         + PL PG+YHLLPR WLT WR Y+RDP+ P PR  D SL LCE HGL L PPH+  FL GE++ +L  L   RSG V E+++ EEWD +   +P D+ ++F V P+   IAW+   C  C+P
Sbjct:  307 VMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALYARRTGCPPSSFALPPSPSSSALF------LPPLDPGLYHLLPRCWLTVWRNYLRDPRAPRPRPPDLSLLLCEAHGLPLVPPHISSFLDGEKKGVLSSLSG-RSGVVCEIVSVEEWDELMKHYPTDYCLKFSVDPEDLSIAWSTSPCARCEP 519
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BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Match: K8YUP6_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUP6_NANGC)

HSP 1 Score: 136 bits (342), Expect = 8.610e-36
Identity = 82/222 (36.94%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:   16 QRQTVEKRVWHELVAFFPRADAFH-SSQGECHECHGDAETERQAKVTVKHLREQEI-ATPTLRGLFARK------------------------------AGVPPSAMSPPPSPGTAXXXXASGAPICPLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPPHVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLHPCDF 585
            +R+ +EKR W  L  ++    AF  S+  EC +C      E++     +  R+ E+ A+P L  L+AR+                              +G PPS+ S PPS        +S   + PL PG+YHLLPR WLT WR Y+RDP+ P PR  D SL LCE HGL L PPH+  FL GE++ +L  L+  RSG V E+++ EEWD +   +P D+
Sbjct:    3 KRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALYARRTGGQARGRRERKLDREDRHIFSALPHPRPPSGCPPSSFSLPPS------SSSSALFLPPLDPGLYHLLPRCWLTVWRNYLRDPRAPRPRPPDLSLLLCEAHGLPLVPPHISSFLDGEKKGVLSSLNG-RSGVVCEIVSVEEWDELMKHYPTDY 217
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BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Match: A0A482SYA4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYA4_9ARCH)

HSP 1 Score: 135 bits (339), Expect = 1.470e-34
Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 1 
Query:   10 SSQRQTVEKRVWHELVAFFPRADAFHSSQGECHECHGDAETERQAKVTVKHL----REQEIATPTLRGLFARKAGVPPSAMSPPPSPGTAXXXXASGAPICPLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPPHVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLHP--CDFGVRFCVHPDSGEIAWNCKKCIHCDP 660
            +++R+ ++ R W  +  ++     F  S  EC  C  D     Q+    K      R  E+  PTL  L  RK GVP   +                 P+  L  G+Y+L+PR WL +WR Y RD   P    LD +  +C  HGLL+ PPH+E ++ G RRSLLGGL  T  G V E++  EEWD +  ++    DFGVRFC+H   G ++WN   C  CDP
Sbjct:   76 NARRKAIDSRAWLAIRRYYGLGPEFRCSAIECPSCLSDQHQSLQSVAEKKEAELEQRRLELVPPTLLALLERKQGVPEHCVH--------REHIDEEEPMYTLREGLYNLVPRDWLRQWRRYTRDLTAPSLTVLDCTRLICYSHGLLVLPPHLEEYILGVRRSLLGGLG-TYEGEVVELVCAEEWDELLRVNKGMTDFGVRFCLH--DGSLSWNVGVCHVCDP 287
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BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Match: A0A1V9YNI1_9STRA (DUSP domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNI1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.370e-9
Identity = 59/220 (26.82%), Postives = 91/220 (41.36%), Query Frame = 1 
Query:   16 QRQTVEKRVWHELVAFFPRADAFHSS---QGECHECHGDAETER---QAKVTVKHLREQEIATPTLRGLFARKAGVPPSAMSPPPSPGTAXXXXASGAPICPLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPPHVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLHPCDFGVRFCVHPDSGEIAWNCKKCIHCD 657
            +R  V   +W +L  +      F S+     EC  C   A+ E+   +AK T + L+  E    +L  L  RKAG PPS +SP                      G + ++P+ WL +WR +V+     PP  +     LC  H   + P  V  FL G   S+L  + P  +  + E++T +EW+ +      +  V F V    G I W    C  C+
Sbjct:  196 KRLAVPLAIWKKLAPYVGAGAVFGSAGLPATECDTCLTTAKLEQLEIEAKKTQRLLQHTESGGDSLYDLLVRKAGHPPSLLSP--------------------ERGQFFVVPQSWLKKWRQFVKSVVDVPPGPILNGALLCARHRRPVVPNSVALFLMGASPSVLTSI-PGITYELYEIVTDDEWEQLQAAFCAEVAVGFEVV--CGTIVWRTLPCQVCE 392
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10618.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FP71_ECTSI9.940e-7763.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTC4_9STRA1.210e-5643.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CUZ8_9STRA6.020e-4841.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YUP6_NANGC8.610e-3636.94Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A482SYA4_9ARCH1.470e-3435.87Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1V9YNI1_9STRA4.370e-926.82DUSP domain-containing protein n=1 Tax=Achlya hypo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10618contigC-tenellus_contig10618:2992..5379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP71
Model size726
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.63e-77
EggNOG OGs2CQHN@1|root,2S453@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000610.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.731265-CDS-C-tenellus_contig10618:2991..31501680789140.731265-CDS-C-tenellus_contig10618:2991..3150Choristocarpus tenellus KU2346CDSC-tenellus_contig10618 2992..3150 -
1680789140.7457886-CDS-C-tenellus_contig10618:4047..43921680789140.7457886-CDS-C-tenellus_contig10618:4047..4392Choristocarpus tenellus KU2346CDSC-tenellus_contig10618 4048..4392 -
1680789140.7541575-CDS-C-tenellus_contig10618:5157..53791680789140.7541575-CDS-C-tenellus_contig10618:5157..5379Choristocarpus tenellus KU2346CDSC-tenellus_contig10618 5158..5379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10618.2.1prot_C-tenellus_contig10618.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10618 2992..5379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10618.2.1

>prot_C-tenellus_contig10618.2.1 ID=prot_C-tenellus_contig10618.2.1|Name=mRNA_C-tenellus_contig10618.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=242bp
MSVSSQRQTVEKRVWHELVAFFPRADAFHSSQGECHECHGDAETERQAKV
TVKHLREQEIATPTLRGLFARKAGVPPSAMSPPPSPGTAAAAAASGAPIC
PLYPGIYHLLPRYWLTEWRGYVRDPKLPPPRALDTSLFLCEGHGLLLAPP
HVEGFLAGERRSLLGGLDPTRSGCVSEVLTPEEWDAITLLHPCDFGVRFC
VHPDSGEIAWNCKKCIHCDPCYIGELYVSRTPRKLSYGVVA*
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mRNA from alignment at C-tenellus_contig10618:2992..5379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10618.2.1 ID=mRNA_C-tenellus_contig10618.2.1|Name=mRNA_C-tenellus_contig10618.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2388bp|location=Sequence derived from alignment at C-tenellus_contig10618:2992..5379- (Choristocarpus tenellus KU2346)
ATGTCTGTTTCTTCTCAGCGCCAAACAGTTGAAAAGAGGGTTTGGCATGA
GCTGGTGGCGTTTTTCCCCAGGGCAGATGCTTTCCACTCCAGTCAGGGAG
AGTGCCACGAGTGCCATGGTGATGCAGAGACAGAGAGGCAGGCGAAGGTC
ACTGTTAAGCACCTCAGGGAACAAGAGATAGCCACCCCCACACTGAGGGG
ACTCTTTGCCCGCAAGGCTGGGGTAAGTCTGGGAGGAGAATGGTGGGTAC
ACGGAGTGTGTTGGATCTATGTTCATTGTGAGTTTTTGTATTATGTGTGT
TGGATGTTTTTGTATGTTTCCGTTGGTCTCGGCGCAGTAAACTAGTAAGC
TGCCCACCCAGAAGAAGCATCTTTTCCAGGCCTGTGGTTTGTGTACTGTG
CCTTATATTCTGTGTCCCTACAACGAGCGCGATGTGTGATGTGTCTGGAC
TCCAATCCCTCGAGTATTGTCCTGTCCTGTACCCGAGCATGTCCCCATGA
CTTTCCTAGTGCATTTTTTTTTTTAGTTGCATCTGTTGATGGAGTTGCTT
TGGAGATGGAGGCGGGGGGGGTGCTTCAGTTGATTGCTTCGAGATCATCG
GACGCACAATGCCTTGTGTTTATGTTCTACACAGAGAATGGTTTGTTTGT
TGTGATGCTCGTGAATTGACTTCTTACTTTTAAGTGAGCGCCCTCGTCCT
ATGCACTGCGGTTGGAGAACGCCTCTTGCTTTGAAACTGTCATTTCGGGA
TGGGGGGGGGGGGGGGGGGGGGGAGGGAAACTGATCTTTTCGCTGCTTGC
ATGGCACCAGTTTCGCAATTCCACGTCATCATTATTTTATTTTATTTTGA
CCCTTACCGCACTGTAACCTCACCACCACAGACCATTCCTGGTCTTGTTC
CCTCCATATATATTCACTATATATACCGCCTCAACACAGTCTCGTGGACT
GATCCATGCATACCCTCAACCTGTCCTTCTTTCTCAGGTCCCACCATCTG
CTATGTCTCCTCCCCCAAGCCCTGGTACAGCAGCTGCTGCAGCTGCCTCC
GGTGCACCCATTTGCCCCCTCTACCCAGGTATATATCACCTCCTCCCCCG
CTACTGGCTCACTGAATGGAGGGGCTATGTGAGAGACCCCAAGCTACCCC
CTCCTCGTGCTCTGGATACAAGTCTATTCCTCTGTGAGGGTCATGGACTG
CTGTTGGCTCCACCGCATGTAGAGGGTTTCTTAGCTGGTGAAAGGCGTTC
ATTGTTGGGGGGGTTGGATCCGACCAGGAGCGGTTGTGTGTCTGAGGTGC
TCACTCCAGAGGAGTGGGATGCTATCACCTTGGTGAGTGTTAGGGCTTGG
GGCTTCTGTGAATGGTGGGTGGTGGATGGACAAGGAAGGATGTATAATAG
TGGCATAATAATAATAATAAAAAATGTGGCAGAACGCCTCGCCTCTTGTG
GTGAAATGAAGAATGCATTAATTTTTATGGTCTGTTAAGGAAGGGTCGAT
AGCCAAGCAGGTTGTTTGTCGTAGGGATAGTAGTCCGTTTTGAGTCAGAA
TTAATTTTGTTTGTTCTGTATTGCCATGTCCTTGAACCCATCGTGAAGAG
TTTGATATCAAACAGTGATATCAAATAGTGCCTAGAGGAATCCATGCCAT
TGTATCGACAGCGATTTTTTGAGGTGTATATGTAGGATGTGTGTATAAGA
TGTGTATCACTTCTGTTGCAGTATGGGCTCGAGGGCCTTACCTAGGCACT
GGACCAGAACATGTCGCAATTGTATCAGGTAAAGGGTAGGTGCAATTGGG
TTTGAGAGTCTTGTCACAACCTAATTTAGGGTTAGGGTCCCTTGGCTTGC
GCGCTATGATGTGACTCTTTATGAGGTTCGACCGACTCTGAATCAACTGG
TTCTGTGCTTGAGTTAGGCAGTATGGTTCAGAGCTAAGAGTGATAGTAAC
ATGCTGATACAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCTTTTCCCCTTTTTTCCCCCCCCTGCTGTTTTTTTGGGGGGGTGTT
TTTTTTATCCAGGAAGGGGGGGAATGTCGCGGGNNNNNNNNNNCCTCTGG
AACAACTTTTTTTTTGCTTTGGTTAGGCAGTTTGGTTCAAAGCTAAAAGT
GAAGGTAACCTGCCGAAACACCCCCCCCCCCCCCCCTCCCCCTCCCCCGC
TCGACTCCTGCCTCTTTGTGCTATGTTAGCTCCATCCGTGTGATTTTGGG
GTGAGGTTCTGTGTACACCCAGACAGTGGAGAAATTGCCTGGAATTGTAA
GAAGTGCATCCATTGTGACCCCTGCTATATTGGAGAGTTGTATGTGTCTC
GCACACCAAGAAAGCTCAGTTACGGAGTGGTAGCCTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10618:2992..5379-

>mRNA_C-tenellus_contig10618.2.1 ID=mRNA_C-tenellus_contig10618.2.1|Name=mRNA_C-tenellus_contig10618.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=726bp|location=Sequence derived from alignment at C-tenellus_contig10618:2992..5379- (Choristocarpus tenellus KU2346)
ATGTCTGTTTCTTCTCAGCGCCAAACAGTTGAAAAGAGGGTTTGGCATGA
GCTGGTGGCGTTTTTCCCCAGGGCAGATGCTTTCCACTCCAGTCAGGGAG
AGTGCCACGAGTGCCATGGTGATGCAGAGACAGAGAGGCAGGCGAAGGTC
ACTGTTAAGCACCTCAGGGAACAAGAGATAGCCACCCCCACACTGAGGGG
ACTCTTTGCCCGCAAGGCTGGGGTCCCACCATCTGCTATGTCTCCTCCCC
CAAGCCCTGGTACAGCAGCTGCTGCAGCTGCCTCCGGTGCACCCATTTGC
CCCCTCTACCCAGGTATATATCACCTCCTCCCCCGCTACTGGCTCACTGA
ATGGAGGGGCTATGTGAGAGACCCCAAGCTACCCCCTCCTCGTGCTCTGG
ATACAAGTCTATTCCTCTGTGAGGGTCATGGACTGCTGTTGGCTCCACCG
CATGTAGAGGGTTTCTTAGCTGGTGAAAGGCGTTCATTGTTGGGGGGGTT
GGATCCGACCAGGAGCGGTTGTGTGTCTGAGGTGCTCACTCCAGAGGAGT
GGGATGCTATCACCTTGCTCCATCCGTGTGATTTTGGGGTGAGGTTCTGT
GTACACCCAGACAGTGGAGAAATTGCCTGGAATTGTAAGAAGTGCATCCA
TTGTGACCCCTGCTATATTGGAGAGTTGTATGTGTCTCGCACACCAAGAA
AGCTCAGTTACGGAGTGGTAGCCTGA
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