mRNA_C-tenellus_contig10601.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10601.4.1
Unique NamemRNA_C-tenellus_contig10601.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10601.4.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 VAILLPTAGENLMVVLKALLGASSQRLWDSGQPVSGTLR 117
            V ILLPTAGENL VV KAL+GA SQRLWDSG P S TLR
Sbjct:  357 VCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 395
[Close]
BLAST of mRNA_C-tenellus_contig10601.4.1 vs. uniprot
Match: D7FSC4_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC4_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.070e-5
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 VAILLPTAGENLMVVLKALLGASSQRLWDS 90
            VAILLPTAGE L VVLK LLGASSQR W S
Sbjct:  174 VAILLPTAGERLDVVLKCLLGASSQRSWPS 203
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10601.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSC3_ECTSI1.810e-979.49Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FSC4_ECTSI4.070e-583.33Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10601contigC-tenellus_contig10601:5282..5398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSC4
PFAMsCellulose_synt,zf-RING_4,zf-UDP
Model size117
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K00694,ko:K10999,ko:K20924
KEGG TC4.D.3.1.2,4.D.3.1.4,4.D.3.1.5,4.D.3.1.6,4.D.3.1.7,4.D.3.1.9
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005938,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009653,GO:0009987,GO:0010927,GO:0016020,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016759,GO:0016760,GO:0022607,GO:0030154,GO:0030243,GO:0030244,GO:0030435,GO:0030587,GO:0031150,GO:0031154,GO:0032502,GO:0032989,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0042244,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0045177,GO:0045179,GO:0045229,GO:0046527,GO:0048646,GO:0048856,GO:0048869,GO:0051273,GO:0051274,GO:0051703,GO:0051704,GO:0070590,GO:0070726,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090702,GO:0099120,GO:0099568,GO:0099738,GO:1901576
Exons1
Evalue6.67e-06
EggNOG OGsCOG1215@1|root,2QQSH@2759|Eukaryota
EC2.4.1.12
DescriptionCellulose synthase
Cds size117
COG categoryM
CAZyGT2
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789140.1403494-CDS-C-tenellus_contig10601:5281..53981680789140.1403494-CDS-C-tenellus_contig10601:5281..5398Choristocarpus tenellus KU2346CDSC-tenellus_contig10601 5282..5398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10601.4.1prot_C-tenellus_contig10601.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10601 5282..5398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10601.4.1

>prot_C-tenellus_contig10601.4.1 ID=prot_C-tenellus_contig10601.4.1|Name=mRNA_C-tenellus_contig10601.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=39bp
VAILLPTAGENLMVVLKALLGASSQRLWDSGQPVSGTLR
back to top

mRNA from alignment at C-tenellus_contig10601:5282..5398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10601.4.1 ID=mRNA_C-tenellus_contig10601.4.1|Name=mRNA_C-tenellus_contig10601.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=117bp|location=Sequence derived from alignment at C-tenellus_contig10601:5282..5398- (Choristocarpus tenellus KU2346)
GTGGCGATCCTTCTCCCCACTGCTGGTGAGAACCTGATGGTTGTGTTGAA
AGCTCTTTTGGGAGCATCATCTCAGCGTCTGTGGGACTCAGGACAGCCTG
TGTCCGGTACCCTCCGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10601:5282..5398-

>mRNA_C-tenellus_contig10601.4.1 ID=mRNA_C-tenellus_contig10601.4.1|Name=mRNA_C-tenellus_contig10601.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=117bp|location=Sequence derived from alignment at C-tenellus_contig10601:5282..5398- (Choristocarpus tenellus KU2346)
GTGGCGATCCTTCTCCCCACTGCTGGTGAGAACCTGATGGTTGTGTTGAA
AGCTCTTTTGGGAGCATCATCTCAGCGTCTGTGGGACTCAGGACAGCCTG
TGTCCGGTACCCTCCGA
back to top