mRNA_C-tenellus_contig10597.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10597.1.1
Unique NamemRNA_C-tenellus_contig10597.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A7S1U3D8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3D8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.020e-24
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYT 258
            VVG SVDYT+HLSDAYL S++KTR  RT+ ML  MG+SV+SGAIST+G+S  LL  YIIFF KFG  ILF+ISQSLV+SL F+T
Sbjct: 1020 VVGMSVDYTVHLSDAYLESKKKTRRDRTRDMLFKMGVSVVSGAISTLGSSCFLLATYIIFFRKFGTFILFVISQSLVYSLVFFT 1103          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A7R9UAE6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAE6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.980e-21
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYT 258
            VVG SVDYT+HLSDAYL S    R+ RT++ML  MG+SV+SGAIST GAS+ LL  Y+ FF KFG+ + F+++QSL FSLFF+T
Sbjct:  496 VVGLSVDYTVHLSDAYLESNALDRQKRTQEMLFKMGVSVVSGAISTFGASLFLLAPYVTFFPKFGSFLAFVVAQSLTFSLFFFT 579          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A7S1CP42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP42_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.340e-19
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLF 249
            VVG S DYT+HLSDAYL +  + R +R + ML  MGISV SGA+ST+GAS+ L+F +I FF KFG V+ F+I  SL+ SLF
Sbjct:   96 VVGLSFDYTVHLSDAYLANDYEDRHSRVRSMLVHMGISVSSGAVSTLGASVFLMFGFIRFFAKFGQVLFFLIVMSLLVSLF 176          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A7S3UNQ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNQ6_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSL 246
            VVG SVDYT+HLS+AYL S   TR+ RT+ M+  MG SVLSGA ST+GA+  L+ A IIFF KFG++I F+I QS+V SL
Sbjct:   12 VVGLSVDYTVHLSEAYLASGRATRQERTRAMVAAMGGSVLSGAFSTLGATTFLMMADIIFFTKFGSIIFFLICQSMVISL 91          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: F0YIL3_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIL3_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.940e-19
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYTTV 264
            V+GFSVDYT+HL+D+Y+ S   TRE +    L   G SVLSGAISTIGASIP+ FA IIFF KFG  IL  I+ SL FSL F++ V
Sbjct:  995 VIGFSVDYTVHLADSYMQSHAPTREGKVTDALVHTGSSVLSGAISTIGASIPMFFAKIIFFYKFGIFILLTIALSLNFSLVFFSAV 1080          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A6J8AN81_MYTCO (Uncharacterized protein n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AN81_MYTCO)

HSP 1 Score: 82.4 bits (202), Expect = 2.030e-16
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYTT 261
            VVG SVDY +HL++AY  S   TR+ R K MLE MG+SVLSGAI+T GA+I LLFA I F  +FG  ++  +  SL+F+  F+TT
Sbjct:  988 VVGLSVDYVVHLAEAYRTSPHSTRDGRVKTMLESMGLSVLSGAITTFGAAIFLLFAQIKFLHEFGIFVMSTVGISLLFAFLFFTT 1072          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A7D9MBW5_PARCT (Dispatched homolog 3-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9MBW5_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 9.180e-16
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYTTV 264
            VVG +VDY +HL++ Y+  + +T EA+ K  L  +GISVLSGA +T+GASI LL A I+FF +FG  I   I  S+++SLFF+ TV
Sbjct:   61 VVGLAVDYVVHLAEGYMELKHETSEAKVKHTLSHVGISVLSGACTTLGASIFLLAAKILFFFQFGIFIFCTIGFSIMYSLFFFPTV 146          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: UPI0009E368F6 (protein dispatched homolog 3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E368F6)

HSP 1 Score: 80.5 bits (197), Expect = 9.610e-16
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYTTV 264
            VVG +VDY +HL+D Y+ SQ+ +R  + ++ L  +GISVLSGA +T+GASI +LFA I+FF +FG  I   I  S+ ++LFF+TTV
Sbjct:  883 VVGLAVDYVVHLADGYVRSQKHSRGDKVRETLGHVGISVLSGACTTVGASIFMLFARILFFFQFGIFIFCTIGLSIFYALFFFTTV 968          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A7D9E5S5_PARCT (Dispatched homolog 3-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9E5S5_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 1.060e-15
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    7 VVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYTTV 264
            VVG +VDY +HL++ Y+  + +T EA+ K  L  +GISVLSGA +T+GASI LL A I+FF +FG  I   I  S+++SLFF+ TV
Sbjct:   67 VVGLAVDYVVHLAEGYMELKHETSEAKVKHTLSHVGISVLSGACTTLGASIFLLAAKILFFFQFGIFIFCTIGFSIMYSLFFFPTV 152          
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Match: A0A2C9KQ77_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KQ77_BIOGL)

HSP 1 Score: 79.7 bits (195), Expect = 1.750e-15
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 SQVVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIGASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYT 258
            S VVG +VDY +HLS++Y  S +KTR+A+ + MLE MG+SV+SGAIST+GA+  ++ A I FFL+FG  +   I  SL++SL  +T
Sbjct:  493 SLVVGLAVDYVVHLSESYHNSPQKTRQAKVRDMLESMGVSVVSGAISTLGAAAFMIGAQIQFFLQFGIFMFCTIGFSLIYSLCLFT 578          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10597.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1U3D8_9STRA4.020e-2469.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UAE6_9STRA1.980e-2161.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1CP42_9STRA1.340e-1958.02Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3UNQ6_HETAK1.560e-1961.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YIL3_AURAN2.940e-1960.47Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A6J8AN81_MYTCO2.030e-1654.12Uncharacterized protein n=2 Tax=Mytilus coruscus T... [more]
A0A7D9MBW5_PARCT9.180e-1651.16Dispatched homolog 3-like n=2 Tax=Paramuricea clav... [more]
UPI0009E368F69.610e-1651.16protein dispatched homolog 3-like n=1 Tax=Orbicell... [more]
A0A7D9E5S5_PARCT1.060e-1551.16Dispatched homolog 3-like (Fragment) n=1 Tax=Param... [more]
A0A2C9KQ77_BIOGL1.750e-1551.16Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10597contigC-tenellus_contig10597:4640..5405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009040208.1
PFAMsPatched
Model size264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.82e-20
EggNOG OGsKOG3664@1|root,KOG3664@2759|Eukaryota
Descriptionpatched ligand maturation
Cds size264
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789139.0917175-CDS-C-tenellus_contig10597:4639..47721680789139.0917175-CDS-C-tenellus_contig10597:4639..4772Choristocarpus tenellus KU2346CDSC-tenellus_contig10597 4640..4772 -
1680789139.1013656-CDS-C-tenellus_contig10597:5274..54051680789139.1013656-CDS-C-tenellus_contig10597:5274..5405Choristocarpus tenellus KU2346CDSC-tenellus_contig10597 5275..5405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10597.1.1prot_C-tenellus_contig10597.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10597 4640..5405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10597.1.1

>prot_C-tenellus_contig10597.1.1 ID=prot_C-tenellus_contig10597.1.1|Name=mRNA_C-tenellus_contig10597.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=88bp
SQVVGFSVDYTIHLSDAYLGSQEKTREARTKKMLEIMGISVLSGAISTIG
ASIPLLFAYIIFFLKFGAVILFIISQSLVFSLFFYTTV
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mRNA from alignment at C-tenellus_contig10597:4640..5405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10597.1.1 ID=mRNA_C-tenellus_contig10597.1.1|Name=mRNA_C-tenellus_contig10597.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=766bp|location=Sequence derived from alignment at C-tenellus_contig10597:4640..5405- (Choristocarpus tenellus KU2346)
TCACAGGTGGTTGGCTTCAGCGTCGACTACACTATCCATCTCTCTGATGC ATACCTTGGGTCACAAGAGAAGACCAGAGAGGCGAGAACAAAGAAAATGC TCGAAATCATGGGCATCTCGGTCCTATCTGGGTGAGAAATAATGCTTCGT GCAGTACTTGTGCAGTACTTCAGTGAAATTTAACACATTTTTTTGTGTTG TAGGCGCAATACAAAACCAAGGGGCCTTGGGACTATGTACTGTGAATAGA TTTCTCCAACGAGAACTGCATCTTATCATTTCGTTTTGGACGTCATGGTG TTGTCGGGTGATTGAACTGTTTTGTGGATAGTAGCTGCGCCTATGCAAGG AAACCTCTTTTTTTCTCAAATATTTAGCTATCAGCGGCCGAACTTCTGCT TGGATGAGTGCAAACATTGCTATTGCTTCATACTTTTATTCACATTAGCC GGAGGCCTTTGTGTACACATTTCCATCGACTTGGTGCATATGAACTTGCT TCAAGCATAGCAGAGGTGGCAAATACACAAACCAAACATATTCACACATA TGAGCCCCTAACACCAACTCCAACTCATTACATTGCTGTTCCCATTTGGA TTTGGGGGACTCCCTATGTTTGGAAATTTACAGTGCTATCTCCACCATTG GCGCATCAATTCCACTCCTGTTTGCGTACATTATATTCTTTCTCAAGTTT GGTGCCGTGATCCTCTTCATAATCTCTCAGAGCCTCGTCTTCTCGCTTTT TTTCTACACTACGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10597:4640..5405-

>mRNA_C-tenellus_contig10597.1.1 ID=mRNA_C-tenellus_contig10597.1.1|Name=mRNA_C-tenellus_contig10597.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=264bp|location=Sequence derived from alignment at C-tenellus_contig10597:4640..5405- (Choristocarpus tenellus KU2346)
TCACAGGTGGTTGGCTTCAGCGTCGACTACACTATCCATCTCTCTGATGC
ATACCTTGGGTCACAAGAGAAGACCAGAGAGGCGAGAACAAAGAAAATGC
TCGAAATCATGGGCATCTCGGTCCTATCTGGTGCTATCTCCACCATTGGC
GCATCAATTCCACTCCTGTTTGCGTACATTATATTCTTTCTCAAGTTTGG
TGCCGTGATCCTCTTCATAATCTCTCAGAGCCTCGTCTTCTCGCTTTTTT
TCTACACTACGGTG
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