mRNA_C-tenellus_contig10563.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10563.1.1
Unique NamemRNA_C-tenellus_contig10563.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 5.190e-101
Identity = 151/239 (63.18%), Postives = 192/239 (80.33%), Query Frame = 1
Query:   22 EHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIVELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            EHF P FFS  RQG+VT ++ TLLGT+LGGGVLS+PFALRRSG+V G  +L++TA ATDF+VFTL+SCSRRSG S+YE+VAD AFGR+AKLLCM LVVCVTYLPL+ YTILLRDLL+P+ E+A+   +    +N++V+  V L++PACT+++L ALRHLS  S+ A  LL   +  R+ +C  S GVP  ++NLWPEDG  GALQ +PI++CAF CHFNVLPVH ELAKPTR+RLH++V
Sbjct:    7 EHFSPHFFSEKRQGTVTGAVATLLGTLLGGGVLSLPFALRRSGVVFGAILLLLTAFATDFTVFTLVSCSRRSGGSSYESVADVAFGRRAKLLCMALVVCVTYLPLVGYTILLRDLLAPLAEVALNRTLGSPARNLLVSALVVLIYPACTLRTLTALRHLSFLSVLAVSLLTVFIGLRAGECAASVGVPASAVNLWPEDGWSGALQAIPIYICAFGCHFNVLPVHGELAKPTRERLHRLV 245          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 252 bits (644), Expect = 9.980e-78
Identity = 136/252 (53.97%), Postives = 182/252 (72.22%), Query Frame = 1
Query:    1 MQRSTSIEH--FRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIVELAI--GEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGS--EGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            M+R  S E   F   F S  R GSVT +++ L+ TVLGGGVLS+PFAL+R+GL+ G+ +L++TA+A+DFSV+ L+SCSRRSGA ++E VA+ AFG +AK   M L++CVTYLPLIAY IL+RDL++P+VEL +  G  MS   +N++    VA VFP C ++ L+ LR   L SI +  +LA  + TR+ QCVG+   G    ++NLWP DG  GALQ VPI++CAFVCHFNVLPVH  LA+PTR+RLH+ V
Sbjct:    1 MRRPQSQEELFFPFSFHSEMRVGSVTGAVLNLISTVLGGGVLSLPFALQRAGLIPGLALLVLTALASDFSVYILVSCSRRSGAQSFEEVAEKAFGPRAKRWGMALIICVTYLPLIAYIILMRDLVAPVVELYVLGGATMSRGARNLLAAALVAAVFPVCLVERLHGLRAACLVSIASITMLAVAIITRAAQCVGAAPRGALRGAVNLWPRDGASGALQSVPIWICAFVCHFNVLPVHGALARPTRRRLHRTV 252          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A8K1C5D8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5D8_PYTOL)

HSP 1 Score: 168 bits (425), Expect = 1.010e-45
Identity = 100/249 (40.16%), Postives = 158/249 (63.45%), Query Frame = 1
Query:    4 QRSTSIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIV-ELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKS---INLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            +R  S E+F P   S  R  +  S++  L+ T++GGGVLS+P+A  + GLVL +  ++I+A A++FS++ ++S SRR  A+TYE V   A G +A L+ + L+V +T+L L+AYTIL++DL+  +  E   G  +S+ +KNV+  + ++LV P    KS++ALR  S+ S+ + F LA  +T RS+    S+ + L++   I L+P D     +   PI   +F+CHFNVLPV+ EL KPTR+RL  +V
Sbjct:   25 ERKGSREYFSPGPHSKERTATSRSAVFNLVSTIIGGGVLSLPYAFDKCGLVLAVVFMVISAAASNFSLYVIVSSSRRGSAATYEEVVRKALGVRAGLITVTLLVMLTFLTLVAYTILVKDLVGTLAGEFLYGRLLSVAEKNVLTIICISLVSPFLFAKSMDALRFTSIFSLASVFTLAMAITIRSVYSPPSDVLLLRNDVPIKLFP-DNWKDPVYAFPIISVSFLCHFNVLPVYRELKKPTRRRLKNIV 272          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A485KWV7_9STRA (Aste57867_12930 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWV7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.200e-44
Identity = 89/242 (36.78%), Postives = 154/242 (63.64%), Query Frame = 1
Query:   16 SIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIV-ELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            S E F P   S  R  +V S+++ L+ T++GGGVL +PF + +SG+V+G F+++  A+A+ F+++ L+SCSRRSGA +YE +A +AFG++ +L  M L++ + +L  + Y IL+RD+   +  +   G  +S++D+N++    V +V P   ++S+++LR+ S+  +    + A  +  RS + V      +  +  +PED + G +  +PI + +F+CHFNVLPV+ EL KPTR RL K+V
Sbjct:   33 SYEFFYPSPHSQTRMTTVKSAVMNLVTTLIGGGVLLLPFTIAKSGIVVGCFLMLCCAMASSFTLYILVSCSRRSGAQSYEEIAKNAFGKKMQLFTMVLLILLIFLAFVGYLILVRDIAGSLASQFIFGRTLSVSDENLVAIGLVGIVSPLLFLRSMHSLRYTSVIGLSTVGIFAFGIFYRSTEKVMQPTFEVSRLRFFPED-VDGPMYALPIIISSFLCHFNVLPVYGELHKPTRHRLKKIV 273          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A6G0XAK0_9STRA (Aa_trans domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAK0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.030e-44
Identity = 91/242 (37.60%), Postives = 151/242 (62.40%), Query Frame = 1
Query:   16 SIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIV-ELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            S E F P   S  RQ +V S+++ L+ T++GGGVL +PF + +SG+VLG  +++   +A+ F+ + L+SCSRRSGA +YE +A +AFG++ ++  M L++ + +L  + Y ILLRD+   +  +  +   +S+ D+N++  V VA+V P   ++S+++LRH S+  +    L A  +  R ++ V         + L   D L G +  +PI + +F+CHFNVLPV+ EL KPTR+RL K+V
Sbjct:   32 SYEFFFPSPHSKARQTTVKSAVMNLVTTLIGGGVLLLPFTVAKSGIVLGCIMMLFCGVASSFTSYILVSCSRRSGAQSYEEIAKNAFGKRMQIATMVLLILLIFLAFVGYLILLRDISGSLASQFILRRPLSVADENLVAVVLVAIVSPLLFLRSMHSLRHTSIIGLSTVGLFAFGIVFRGVEKVLDNRFDSSKLVL-VADSLDGPMYALPIIISSFLCHFNVLPVYGELQKPTRRRLKKIV 272          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: K3WGF0_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGF0_GLOUD)

HSP 1 Score: 162 bits (409), Expect = 4.560e-43
Identity = 96/256 (37.50%), Postives = 157/256 (61.33%), Query Frame = 1
Query:   16 SIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIVE-LAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEG-----VPLKS---------INLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            S E F P   S+ R  +  S++  L  T++GGGVLS+P+A  + GLVL +  ++++A A++FS++ ++SCSRR GA+TYE +   A G +A L+ + L+V +T+L ++AY IL++DL+  + E       +S+ +KNV+  + ++L+ P    +S++ALR  S+ S+ +  LLAT +T R+++ + S G      PL +         I L+P       +   PI   +F+CHFNVLPV+ EL +PTRQRL K+V
Sbjct:   56 SHEFFSPGPHSSERTVTAPSAIFNLASTIVGGGVLSLPYAFDKCGLVLTVVFMVLSAAASNFSLYVIVSCSRRGGATTYEEIVRKALGPKAGLITVTLLVLLTFLTMVAYVILVKDLVGSLGEQFLFARAISVVEKNVLTLICMSLILPVLFTRSMDALRFTSMFSLMSVLLLATAITIRAVKSLQSHGDATSSAPLSTDQVADHTIPIKLFPTHWQ-DPVFAFPIISISFLCHFNVLPVYRELREPTRQRLKKIV 310          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A5D6XH06_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH06_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.950e-42
Identity = 96/250 (38.40%), Postives = 153/250 (61.20%), Query Frame = 1
Query:   16 SIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIVE-LAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCV--------GSEGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            S E F P   S  R     S++  L  T++GGG+LS+P+A  + GLVL    ++++A+A++FS++ ++SCSRR GA+TYE +   A G +A L+ + L+V +T+L ++AY IL++DL+  + E       +S  +KN +  V VAL+ P    +S++ALR+ S+ S+ A FLLA  +T R+++ +         +E  P+K   L+P +     +   PI   +F+CHFNVLPV+ EL KPTR RL K+V
Sbjct:   61 SHEFFSPGPHSKERTVRAPSAIFNLASTIIGGGILSLPYAFEKCGLVLAFVFMVVSAMASNFSLYVIVSCSRRGGATTYEEIVRKALGPKAGLVTVTLLVLLTFLTMVAYVILMKDLVGSLGEQFLFARAISAAEKNALTVVCVALISPVLFARSMDALRYTSIFSLMAVFLLAVAITIRAVKALEDPATVANAAEPAPIK---LFPSNWR-DPVFAFPIISISFLCHFNVLPVYRELHKPTRHRLKKIV 306          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A484DTN2_BRELC (Aa_trans domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTN2_BRELC)

HSP 1 Score: 159 bits (402), Expect = 2.610e-42
Identity = 96/246 (39.02%), Postives = 148/246 (60.16%), Query Frame = 1
Query:    7 RSTSIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPI-VELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKSINL-WPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            R  S E F P   S  R  +  S+   L+ T++GGGVLS+P+A  + GLV+  F+++  A A+ FS++ ++SCSRR  A++YE V   A G +A  + + L+V +T+L L+AYTIL +DL+S +  +      +S  ++N++    V LV PA   +S++ALR  S+ S+ +  +LA T++ R++    S     K I++    D L  A+   PI   AF+CHFNVLPV+ EL KPTR RL K+V
Sbjct:   29 RRASHEFFSPGPLSTMRTTTAPSATFNLVSTIIGGGVLSLPYAFDKCGLVVAFFLMVFAASASTFSLYVIVSCSRRGRAASYEEVVRKALGERAGHITVLLLVLLTFLTLVAYTILTKDLVSSLGAKFIFNRPISNAEQNILTISCVLLVSPALLARSMSALRFTSMFSLMSVLMLAITISIRALGVTLSHRDIQKEIHIKLTPDSLADAVYAFPIISVAFLCHFNVLPVYRELHKPTRHRLKKIV 274          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: T0QZ21_SAPDV (Aa_trans domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QZ21_SAPDV)

HSP 1 Score: 156 bits (395), Expect = 2.100e-41
Identity = 85/242 (35.12%), Postives = 147/242 (60.74%), Query Frame = 1
Query:   16 SIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPIV-ELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            S E F P   SA R+ +  SS++ L+ T++GGGVL +P+ + RSG+VLG  ++   A+ + F+ + L+SCSRRSGA +YE +A +AFG++ ++  M L++       + Y IL+RD+   +  +   G  +S+ D+N++    + LV P   ++S+N+LR+ S+  +    + A  +  RSI+ + S      ++  +  D +   +  +PI + +F+CHFNVLPV+ EL KPTR+RL ++V
Sbjct:   30 SYEFFYPSPHSAARRATAKSSIMNLVTTLIGGGVLLLPYTIARSGIVLGCIMMFFCAMGSSFTSYILVSCSRRSGAQSYEEIAKNAFGKRMQVFTMVLLIXXXXXXXVGYVILVRDIAGSLASQFIFGRALSVHDENLVAMCLIGLVSPLLFLQSMNSLRYTSILGLCTVGVFAIGIFYRSIEKINSPSFDASTLK-YAADNVEDPMYALPIVISSFLCHFNVLPVYGELHKPTRRRLKRVV 270          
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Match: A0A421GWR1_9STRA (Aa_trans domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GWR1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.350e-41
Identity = 95/249 (38.15%), Postives = 149/249 (59.84%), Query Frame = 1
Query:   16 SIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSGLVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLCMGLVVCVTYLPLIAYTILLRDLLSPI-VELAIGEEMSMTDKNVMVTVFVALVFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGS-------EGVPLKSINLWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV 738
            S E+F P   +  R  +  S++  L+ T++GGG+LS+PFA  + GLV+ I  ++I A A+ FS++ ++SCSRR  A++YE V   A G +A  + + L+V +T+L L+AY IL +DL+  +  +   G  +S+ ++NV+  V V LV PA   +S++ALR  S+ S+ +  +LA  +T R++  V         E  P+  + L P   +  A    PI   +F+CHFNVLPV+ EL KPTR RL K+V
Sbjct:   26 SHEYFSPGPLATTRTATAPSAIFNLVSTIIGGGILSLPFAFDKCGLVVAIVFMMIAASASTFSLYVIVSCSRRGRAASYEEVVRKALGARAGRITVVLLVLLTFLTLVAYIILTKDLVGSLGSQFLYGRALSVAEQNVLTIVCVLLVSPALLARSMDALRFTSVFSLVSVLVLAVAITFRAVSVVFKQRDILDVESEPVIPVKLVPTSWV-DATYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKVV 273          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10563.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW38_ECTSI5.190e-10163.18Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA9.980e-7853.97Transmembrane amino acid transporter protein-domai... [more]
A0A8K1C5D8_PYTOL1.010e-4540.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KWV7_9STRA2.200e-4436.78Aste57867_12930 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XAK0_9STRA3.030e-4437.60Aa_trans domain-containing protein n=1 Tax=Aphanom... [more]
K3WGF0_GLOUD4.560e-4337.50Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
A0A5D6XH06_9STRA1.950e-4238.40Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A484DTN2_BRELC2.610e-4239.02Aa_trans domain-containing protein n=1 Tax=Bremia ... [more]
T0QZ21_SAPDV2.100e-4135.12Aa_trans domain-containing protein n=2 Tax=Saprole... [more]
A0A421GWR1_9STRA2.350e-4138.15Aa_trans domain-containing protein n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10563contigC-tenellus_contig10563:3404..5307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FW38
PFAMsAa_trans
Model size738
Max annot lvl2759|Eukaryota
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
Hectar predicted targeting categorysignal anchor
Exons6
Evalue8.51e-102
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Ec32 ortholog descriptionAmino acid transporter
Ec32 orthologEc-01_003240.1
Descriptionamino acid transmembrane transporter activity
Cds size738
COG categoryE
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10563.1.1prot_C-tenellus_contig10563.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10563 3404..5307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789137.686611-CDS-C-tenellus_contig10563:3403..35091680789137.686611-CDS-C-tenellus_contig10563:3403..3509Choristocarpus tenellus KU2346CDSC-tenellus_contig10563 3404..3509 +
1680789137.702421-CDS-C-tenellus_contig10563:3621..37181680789137.702421-CDS-C-tenellus_contig10563:3621..3718Choristocarpus tenellus KU2346CDSC-tenellus_contig10563 3622..3718 +
1680789137.7175329-CDS-C-tenellus_contig10563:3907..40131680789137.7175329-CDS-C-tenellus_contig10563:3907..4013Choristocarpus tenellus KU2346CDSC-tenellus_contig10563 3908..4013 +
1680789137.7285798-CDS-C-tenellus_contig10563:4120..42611680789137.7285798-CDS-C-tenellus_contig10563:4120..4261Choristocarpus tenellus KU2346CDSC-tenellus_contig10563 4121..4261 +
1680789137.737255-CDS-C-tenellus_contig10563:4633..47111680789137.737255-CDS-C-tenellus_contig10563:4633..4711Choristocarpus tenellus KU2346CDSC-tenellus_contig10563 4634..4711 +
1680789137.7549744-CDS-C-tenellus_contig10563:5097..53071680789137.7549744-CDS-C-tenellus_contig10563:5097..5307Choristocarpus tenellus KU2346CDSC-tenellus_contig10563 5098..5307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10563.1.1

>prot_C-tenellus_contig10563.1.1 ID=prot_C-tenellus_contig10563.1.1|Name=mRNA_C-tenellus_contig10563.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=246bp
MQRSTSIEHFRPDFFSAHRQGSVTSSLVTLLGTVLGGGVLSIPFALRRSG
LVLGIFVLIITAIATDFSVFTLISCSRRSGASTYEAVADHAFGRQAKLLC
MGLVVCVTYLPLIAYTILLRDLLSPIVELAIGEEMSMTDKNVMVTVFVAL
VFPACTIKSLNALRHLSLCSIFASFLLATTVTTRSIQCVGSEGVPLKSIN
LWPEDGLLGALQGVPIFVCAFVCHFNVLPVHSELAKPTRQRLHKMV
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mRNA from alignment at C-tenellus_contig10563:3404..5307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10563.1.1 ID=mRNA_C-tenellus_contig10563.1.1|Name=mRNA_C-tenellus_contig10563.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1904bp|location=Sequence derived from alignment at C-tenellus_contig10563:3404..5307+ (Choristocarpus tenellus KU2346)
ATGCAGAGGTCAACGAGCATTGAACACTTCCGGCCGGATTTTTTTTCCGC GCATCGACAGGGTTCTGTAACCTCCTCTCTCGTCACCCTGCTGGGCACCG TTTTAGGTGACCTATGTGGAAAATGTCCCTTAACTGACCCCCATCCAGAC TTCCTGTTGGTATGAACTTTCTGACTTTGTGTGGTTCCTTGTCACCCTAC TTCGGATGTGATTTACAGGAGGGGGAGTGCTCTCTATTCCCTTCGCTTTG CGTCGCAGCGGACTCGTGTTGGGTATCTTCGTCCTGATTATAACTGCCAT CGCAACTGACTTCAGGTTGGTACATTTGTATCTGGTGTGTCTGAGACTCA TCTCTTCTGGTTTGAATGCTTAGGATTTGTCTATGATCCACTTCCTCACC GCAGAATGGATATTGAGTACCATGCACCCTCAACAACAGCGACTCTTCTT GCTTCAATATTTAACACTTACTGTTGATACAAACGTCCCCAAAATTTACG ACAGTGTGTTTACCCTTATATCCTGCTCACGTCGATCGGGAGCATCAACG TATGAAGCGGTGGCGGACCATGCATTCGGCCGACAGGCGAAGCTACTATG TATGGGACTGGTGAGTCTATTCGCGTTCTCCGCACACCAACACTTCTTCT CCCACGACTTCATCCCTTCACTCTAATTCTATTGACCAACTCCATTTCCC TACAAATACATTGACAGGTTGTGTGCGTGACCTACCTTCCGTTGATAGCG TACACTATTCTGTTGAGAGACCTGCTATCGCCCATAGTGGAGTTGGCCAT CGGAGAGGAAATGAGCATGACGGATAAGAATGTCATGGTGACCGTGTTTG TTGCACTGGTGAGCCCCCTGGATTTTTTTTCGGGATCTGAGCCAATACAG CAAGCAAGCTAGTCATCAACATCGTTACCTTTATTTTGATACGAGAAAGT TAATAGGAGTGAGAGTCCCCCGACATTGTCTAGGTTTCTAGTTCTCAGGC TGCCTCAGCACATTACACTTGTCCATTAATGACTTCAGGTTCCTACCGAG GTGCTGAAGGTGTAAAGGGGGAAAATCAAATCTTGTGGGTAAAAAAAATT CCGTTACGGAATGCCATCAAGTCCAACTATGTCCTGCACGTTCCACCCAT CCTCAACCGAGTCTCCTAGACTCACTACTTGATTATTCTTGAGATGCCTC ACTGCTTTGCTTCACCTCTTCCCTTTCCAGGTGTTTCCTGCATGCACCAT CAAGTCCCTAAATGCCCTTCGCCATCTATCACTGTGCAGCATCTTTGCAT CATTCCTGGTGAGGCACAGCGCCGATATCAATCCAATGGATGTAATACTT CGACATGCTCTCCCTCTTGAATACCCTCACTCCTGGGTGAACCACCCATC CACCACCACCACCACCACCACTACCATCCCTTGTGGTGTTTGTTAGGTTT GTTAGTTACTGAGAGGCTTTTTTTTGGTCGGACATAACTCAGCGAACATC TCTCTCCCTCTCCTCTCTCTCTCTCTCTCTTTCAAGTTTGCACCGTTGAA GTGTCGCTTGTTTTCAACACGGCCCGAAATTGGACTCTTTCCGCCAGCAA AGTCATTCGCAACCGATAATATAATATGTTCACCCAACAACAAGTCCGCT ATCTTCTCTCTCTCCCTTGGCGATACACGAATGTGCCCTTGCAGCTGGCG ACGACGGTCACAACTCGGTCCATCCAGTGCGTGGGTTCGGAAGGCGTGCC GCTCAAGAGCATCAATCTGTGGCCGGAGGACGGGCTCCTGGGCGCTCTGC AAGGCGTTCCCATCTTCGTGTGCGCCTTCGTGTGCCACTTCAACGTGCTC CCAGTGCACAGCGAGCTCGCCAAGCCCACGCGGCAACGCCTCCATAAGAT GGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig10563:3404..5307+

>mRNA_C-tenellus_contig10563.1.1 ID=mRNA_C-tenellus_contig10563.1.1|Name=mRNA_C-tenellus_contig10563.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=738bp|location=Sequence derived from alignment at C-tenellus_contig10563:3404..5307+ (Choristocarpus tenellus KU2346)
ATGCAGAGGTCAACGAGCATTGAACACTTCCGGCCGGATTTTTTTTCCGC
GCATCGACAGGGTTCTGTAACCTCCTCTCTCGTCACCCTGCTGGGCACCG
TTTTAGGAGGGGGAGTGCTCTCTATTCCCTTCGCTTTGCGTCGCAGCGGA
CTCGTGTTGGGTATCTTCGTCCTGATTATAACTGCCATCGCAACTGACTT
CAGTGTGTTTACCCTTATATCCTGCTCACGTCGATCGGGAGCATCAACGT
ATGAAGCGGTGGCGGACCATGCATTCGGCCGACAGGCGAAGCTACTATGT
ATGGGACTGGTTGTGTGCGTGACCTACCTTCCGTTGATAGCGTACACTAT
TCTGTTGAGAGACCTGCTATCGCCCATAGTGGAGTTGGCCATCGGAGAGG
AAATGAGCATGACGGATAAGAATGTCATGGTGACCGTGTTTGTTGCACTG
GTGTTTCCTGCATGCACCATCAAGTCCCTAAATGCCCTTCGCCATCTATC
ACTGTGCAGCATCTTTGCATCATTCCTGCTGGCGACGACGGTCACAACTC
GGTCCATCCAGTGCGTGGGTTCGGAAGGCGTGCCGCTCAAGAGCATCAAT
CTGTGGCCGGAGGACGGGCTCCTGGGCGCTCTGCAAGGCGTTCCCATCTT
CGTGTGCGCCTTCGTGTGCCACTTCAACGTGCTCCCAGTGCACAGCGAGC
TCGCCAAGCCCACGCGGCAACGCCTCCATAAGATGGTA
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