mRNA_C-tenellus_contig10537.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10537.1.1
Unique NamemRNA_C-tenellus_contig10537.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10537.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10537contigC-tenellus_contig10537:70..5537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFJ4
Preferred namefbxw9
PFAMsF-box-like,LysM,WD40,fn3
Model size2511
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K10265,ko:K18551
KEGG ReactionR02323,R03346
KEGG Pathwayko00760,map00760
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.62e-05
EggNOG OGsKOG0281@1|root,KOG0281@2759|Eukaryota
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Cds size954
COG categoryS
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10537.1.1prot_C-tenellus_contig10537.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10537 1059..4949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.5050592-UTR-C-tenellus_contig10537:69..6021680789136.5050592-UTR-C-tenellus_contig10537:69..602Choristocarpus tenellus KU2346UTRC-tenellus_contig10537 70..602 +
1680789136.5209587-UTR-C-tenellus_contig10537:622..10581680789136.5209587-UTR-C-tenellus_contig10537:622..1058Choristocarpus tenellus KU2346UTRC-tenellus_contig10537 623..1058 +
1680789136.5685678-UTR-C-tenellus_contig10537:4949..55371680789136.5685678-UTR-C-tenellus_contig10537:4949..5537Choristocarpus tenellus KU2346UTRC-tenellus_contig10537 4950..5537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.533717-CDS-C-tenellus_contig10537:1058..12481680789136.533717-CDS-C-tenellus_contig10537:1058..1248Choristocarpus tenellus KU2346CDSC-tenellus_contig10537 1059..1248 +
1680789136.5459685-CDS-C-tenellus_contig10537:3425..38851680789136.5459685-CDS-C-tenellus_contig10537:3425..3885Choristocarpus tenellus KU2346CDSC-tenellus_contig10537 3426..3885 +
1680789136.557328-CDS-C-tenellus_contig10537:4645..49491680789136.557328-CDS-C-tenellus_contig10537:4645..4949Choristocarpus tenellus KU2346CDSC-tenellus_contig10537 4646..4949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10537.1.1

>prot_C-tenellus_contig10537.1.1 ID=prot_C-tenellus_contig10537.1.1|Name=mRNA_C-tenellus_contig10537.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=318bp
MPGLEGYWTDYHDAGVANIDTSDSYDEYPVADPEERGRATALQAMSGVSV
VDVEMGVGKRILTGHYSTKLLVMGGSLNALVVVDGNDFGSLGYTLHSPSE
IYESPYFHFNPRICRITGWERSGPEVGLGPGGRHIQGQEDPGVTCHLGAR
GGKKGNLRGKTRSRQRQTPVTPWVDVRPSPVDGICTCAAVSGAVLFLGYH
TEQIIAVHVMYGQKLYRLIIGGLSPVRILPDKDSLLVYCFSGNLTRWWWP
DEEGRHWRHSAAEKLGGCACRDELLTRSGGDSVDCEFLWEIPNAGGASPE
SKYEMVRGCSSSSVGGS*
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mRNA from alignment at C-tenellus_contig10537:70..5537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10537.1.1 ID=mRNA_C-tenellus_contig10537.1.1|Name=mRNA_C-tenellus_contig10537.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5468bp|location=Sequence derived from alignment at C-tenellus_contig10537:70..5537+ (Choristocarpus tenellus KU2346)
TGTGGAGAATGTTCTTGTTTTAGTGCAATATAGAACCTTGTCTTGAGTGT
ATGTAGTGAGAAACTGATCCGTCATGAAGAACATCTCCCATAGACTTGAA
GATAGGCTGGTGTGGTGCAGTGCTGCTCCTCAACCTCCTCCCATCCTCCT
CCTGTCACTGAACCTTACCTGAATGTGTCCCCGTTATGTCCTCTGCCCTT
GCATGCCGCCCTTCCCAACCCACCCAACTTATTGAACTGCTTTGTGTGTT
GTCCCAAACCTTTGGACTCTCAGCTTAGCTCGAGCTCAAAATATTGTTGT
ACCATGTTGGAACAACATATTGCAACTTCTAGGCTCTAGAGCAACAATAT
TCCAACCGATGAGCGAACCCTTCCGTTGCTAGACTGGCATTGAGGCCAGT
GTAATGGAAGACAAGTTTCAGCATTGATCACCCTAATATTCTTTTTGTAG
CCACAACCGATTTCTGAAATGTGGTGTATCCCAAGACTTAACCCCAAGAT
GTGCAGTGATTGCTTCGTCGCTGGAAAGATGGAGGAGAGGAGAGACTCAG
TGTGTGCTCCCTGAGCGATATGGAGCCTTCCCCAATCTCCTGTTACCGAT
CCATTATGCTACCATGATCCGGATGACTGCGGACAAGAGAGTTCCTGCAT
CAATCCTGGCGTGCTATCCTGATAGAACTTCCTGATGCTATTCTGATAAC
CTAACCTAATTTTGCTTCCTCCCACGAGGTATTGCTCCCGTGTCTTCACT
ATTGTCTTCACTACTGTATTCACTACTGTCTCTGACATGTTCATTCATAC
ACAAACTCTGTGCATTCTTCGCACCGACACCTGCTGCGATGATGAAACCC
TCCTGTGTCTGCGTCTATAAACAGGTTCATCTCCTTCATATCCTTGTCCA
AGCCAACATGTAGAGCCTTTGTGGCTGGCCCTGGCACTGACCATTCATCA
GGAGATTCTGACTCCACTACAGGAAATGCTGGGTCAGAGATGCCTGGGTT
GGAAGGCTACTGGACTGACTACCATGATGCTGGTGTTGCTAACATTGACA
CGAGTGACAGTTATGATGAGTACCCAGTAGCTGACCCAGAGGAAAGGGGC
CGTGCCACAGCTTTGCAGGCTATGTCTGGGGTTTCTGTAGTGGATGTGGA
AATGGGGGTGGGAAAGCGCATACTCACAGGTGGGGGAAATGTTCATCCTG
CCCACCTCTCACCCCTCCCCTCCTCTGCCCATCTCTCCTCAAAAACCCTG
TTGGTGTGTTGCAGCCGTGCTGATAAATAGAGATGTGATCCGCCCCAGTC
AATTATTGATATCCCATGCTGTGGTCAACAAATTTCAGCTCCAATTAGAG
TTGGTGGTGTCCAATTCGTCATTAGAAGCGATGGACTCCTCATTGGATAC
AGAGGAGAAGATTATGCCATTTTCTTGAGGTATGTTGCTGTTTTCCTGTT
CAATCACACCTTTACACATTTTGAGGAAATGTCTTGAGGAGCTTTGCTTA
GTAGGCAGCAGAAGTCTCATCTCTTGCTGTTATTGTCCATTTTTCCATGG
ATTGCGAAAGGCAGGATGTGAGTTAGCTGAAAAGGATGAAATCCACTCAA
ACACGTAAGAATCCATACTTTTAATTTTTGAGTGTAGTAGTACAAACCCC
TATCTAAAAATGAAAAAAAATGCAGCATACTTTTGTACATTTGATCTAGG
CGTGACAGGTGAAGATTAATTATTCACCTAACACGTTAAAAATAAAGTAG
TTAGTTTAACTTTTTGACGTTTTATACTTGAAATTTGCAATGAGATATTT
ACTAGAAGCACAGATTTCATGCAAGCAAGGCTAGCATTTGCTTTATTTTG
TATTTTTTTAGTAATTAATATTTACGGTAAGTGCACCCCAGCGCGGTGCA
GTTATGCAACAGCCACAGTATAAGAACAACTGGGTGGTGTGGTATGGTAG
GGTGAAACGTATCCCTAGGAACCCAGGATACAGTTGGGGCATTCTAACAG
TTCCATACGGTTTCACAATTTCAGACAATGGGGTCGTGGAATAGGCTAAC
CATGGACATTTTTCCCAGTCAATACTGTAACTGTGAAAAAAAAAGAGGGT
TTTGCTGCAGTATTTCTTAGCTGTGTAGACCCCTGCAAGTTTTGAAGGCT
GATCTGCCTTGAGATGCACAGTGATAGAAGAAAATGATGGTTGTATAGTT
TGAAAAACATCACAGGGGTGAGGAAGATGATTGATGTATTTTAGTCACTA
GTTTGGAGTGTTTGATCATACTGTTTGCGATGTGGGGGGTGTATTGTTGA
CCCAAAGAAGAAACCAAGAAGGTGCTGCTGCTGAGTTTCAAGGGCCCCTC
TGTCTTTCTGGTGGAATAAATGTTTGGAGCACACACGTCTGCAGGTGTGG
AGTACATATTAGCTGCTTTATGGCCATATTTAAATATTAAATTTAAATTG
CAGAAGTGGGGCATCCATATCGGTTCCCTTTTGCAAATGTCTTCATCTTC
GGTGAACAAAGTTGAAGAGTGTCTTGTAAACCTCAAAATGGTCAAAACAT
CTTTCTCTGTCAGTTGAAGAGTTGGTATTGTAAACTCTAAAATTTGAGTA
GACAGCTTGATTCTTCGAAGTGGGGTACAACATAAAACCCAAGACTCTAG
ATAGTAAAGGCTCTTGTGTATGTTGGGAGCTGATCGAATCGTTTTCTTGC
TTACTTATTTTTCTGCGGACTTAAGTCAGATGATGAAGATGTCCAACTCC
ACTTGAAGTAAAGCTAGATGGAAAAAACAAGAATCTCTTCATATCCACTC
AAACTCCGAGTGTGTTTTGTTGTCCTTCCATCTGCGTGTCCAAAGTATCA
GTCTTATCTATTCTGTCTTGCGTGGTGGAGTGATTTGAGCACATTGGACG
ATACAGTCATAATATTTTTTGCGTTTTATGGATCCCTTGCACCAGCAACT
GTTTCTTGGGGTGGGGAGGGAAAGAATATATTTTTTAATTCTATGCTATT
GATGTTCCCTTTCTCTTTCTGATGCTAGATGGGTGAAAAAGTGGACCATG
CGTTGTCCAATGAGTGGGCACTATACTGCTCAGTTCCCAGTCCTACACAT
TTTCCGCCAGCAGTTGTAACCAATAAGCACAATTTGTATCATTGGTTGCC
CTCTGGCAAGCACTCTGGGTATAAGTTAAATCTCTTTGTTTCATCGGGTT
TAGTTTGTGCCTTGCTCATTTTATTAAGACTGGATATGGTAGAAACAATT
GTCTTCTGGGTTCTGCTGTTGTGTTGGTTGTAAATCCTTTCATTCCACCT
TTCGATATGTGGTGTATGTATTGATCACAATCCTTCCAAACTCTGACTTG
AACCAGGGCACTACTCGACAAAGCTCCTTGTGATGGGGGGGTCTCTGAAT
GCTCTTGTTGTGGTGGACGGCAATGATTTCGGTAGCCTTGGATACACCCT
ACATTCTCCATCTGAGATATATGAATCCCCGTACTTTCACTTCAACCCAC
GCATATGCCGCATAACTGGGTGGGAAAGATCAGGACCGGAGGTAGGGCTG
GGCCCAGGGGGAAGGCACATACAGGGGCAAGAAGACCCAGGAGTTACTTG
TCATTTGGGGGCCAGAGGGGGGAAGAAAGGCAATTTGAGAGGGAAAACTA
GAAGCAGACAAAGGCAAACACCGGTCACACCTTGGGTGGATGTTCGACCA
TCACCCGTCGATGGCATCTGCACATGTGCAGCTGTGTCTGGTGCTGTCCT
CTTTCTAGGTTATCATACAGAGCAGATTATTGCTGTTCATGTAATGTATG
GTCAGAAGCTGTACAGGTGAGGCTTGTTGGATACGTATTTCAGATGCTTA
CACTGTGGTGCTTGTTTTTCCTCCTATCTACTTTGTAGTGTGTACTGTGT
GATACTAGGCGTGCTATTGGGTTGGTATCGTTATCTTGCTCCAGGGGAGG
GTGGTTACAGAGATCCGTTCAATTCTATGTTGTGGCATGCAAGAATCGCT
ATGGAAATCTTCCCTCCCTTTGAATGTTTTCATATTTTTATGTGTTACTG
TGTGTATTTATTCAATCGAACAGTGCTGACTTGATGGAATTTTCGGGGGG
GTTAGCAGCTCATTTCTTTCATGCATATTTATTCGTGCTGCACATGGGAT
GAGACTTTTGTGTGAAACGCCTATGAATACTTAGATCATATTTTCCCATT
TTTGACAGATTCCTCGTTGTTAAACACCCTTATGTTGTTAGATTCTTGAT
CGCATGTCCATAGCAGCTATCACTAGCTCTACAACAAGGTATGTTGACCC
TGAAATATAAGCAAATATTTTTTTCTTAAGCTATGCTAACATTGAGAGAT
GAGGGAGATGACACAAAATACAAGTTTGCACCACTCGAATGGCCTGCTTA
TCACATTTAACCAATACGATGTGTTGACCTCCTTGCAACCTCCACAGCCT
TCATATAAAAATGAGCCTTAAATATATGGAATGGAATCTGTGATGCAGAA
AGAAATGCACAGAAGCTGCAGAACACAACGCATCCCTCATGTCCTCTTTC
CTTTGCTGTCCTCCCCACCCCCCCAGGCTGATTATAGGTGGTCTTTCTCC
AGTCCGCATCCTCCCTGATAAAGACTCCCTGCTAGTATACTGCTTCTCTG
GGAATCTGACTCGATGGTGGTGGCCAGATGAAGAGGGTCGCCATTGGCGC
CACTCAGCTGCAGAGAAACTAGGAGGCTGTGCATGTAGAGATGAATTGTT
GACGCGGTCTGGAGGGGACAGTGTAGACTGCGAATTCCTCTGGGAAATAC
CTAATGCTGGGGGGGCATCACCAGAGAGCAAATATGAAATGGTTAGAGGC
TGCAGTAGCAGTAGTGTTGGTGGAAGTTAGTGTGGTTATTTTTGTTGTGA
ACGCTAAAAAGTATAGATGTTACTGCAGTCCTTGATGTATGTTACATAGC
ATAAGGCAGGGATTTGAAAACGCTACAAATGGGTGAATGTACAGTGTGGT
TGTGAGGGAAGATCATTATCTTGAGGACTCAGGGATGTGTCGACGTTTCT
GTGGGTTGAGTTTGCTGGCTTAGGTTAGGAGGCTATTCAGTGCTACTACG
GTTGTTGCTATTATTGACCTTTGACATTCACAAGCACCGCCTGTCTCGAC
ACTGTTTTGTTCAAAACCGCACAGTTTAATTATCGATGTCTCTCTTAGAA
GTTGAAGAAGGCTTAGGCTTGCCTATTCACACAGCATCATCCAGCCGCAA
CAAAAGGGATGCAAAGGCATGGGTGGCAGGAGAATTGGTCCTGTCGTGAT
CCACCAAATTGCACAGACTACTACTGGTCTGGTGTTGGTGGAATCTACTA
AGAACAGCCTCTCGGCAAAATTGAGGATGGAGCTTACTATGGAGGATGGG
TTTGACCCAAAATGGTGTGCGGAAAGTGTCCATATGTTTGTTTTGTAAAT
GTTGCGGCACTTTTGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10537:70..5537+

>mRNA_C-tenellus_contig10537.1.1 ID=mRNA_C-tenellus_contig10537.1.1|Name=mRNA_C-tenellus_contig10537.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=954bp|location=Sequence derived from alignment at C-tenellus_contig10537:70..5537+ (Choristocarpus tenellus KU2346)
ATGCCTGGGTTGGAAGGCTACTGGACTGACTACCATGATGCTGGTGTTGC
TAACATTGACACGAGTGACAGTTATGATGAGTACCCAGTAGCTGACCCAG
AGGAAAGGGGCCGTGCCACAGCTTTGCAGGCTATGTCTGGGGTTTCTGTA
GTGGATGTGGAAATGGGGGTGGGAAAGCGCATACTCACAGGGCACTACTC
GACAAAGCTCCTTGTGATGGGGGGGTCTCTGAATGCTCTTGTTGTGGTGG
ACGGCAATGATTTCGGTAGCCTTGGATACACCCTACATTCTCCATCTGAG
ATATATGAATCCCCGTACTTTCACTTCAACCCACGCATATGCCGCATAAC
TGGGTGGGAAAGATCAGGACCGGAGGTAGGGCTGGGCCCAGGGGGAAGGC
ACATACAGGGGCAAGAAGACCCAGGAGTTACTTGTCATTTGGGGGCCAGA
GGGGGGAAGAAAGGCAATTTGAGAGGGAAAACTAGAAGCAGACAAAGGCA
AACACCGGTCACACCTTGGGTGGATGTTCGACCATCACCCGTCGATGGCA
TCTGCACATGTGCAGCTGTGTCTGGTGCTGTCCTCTTTCTAGGTTATCAT
ACAGAGCAGATTATTGCTGTTCATGTAATGTATGGTCAGAAGCTGTACAG
GCTGATTATAGGTGGTCTTTCTCCAGTCCGCATCCTCCCTGATAAAGACT
CCCTGCTAGTATACTGCTTCTCTGGGAATCTGACTCGATGGTGGTGGCCA
GATGAAGAGGGTCGCCATTGGCGCCACTCAGCTGCAGAGAAACTAGGAGG
CTGTGCATGTAGAGATGAATTGTTGACGCGGTCTGGAGGGGACAGTGTAG
ACTGCGAATTCCTCTGGGAAATACCTAATGCTGGGGGGGCATCACCAGAG
AGCAAATATGAAATGGTTAGAGGCTGCAGTAGCAGTAGTGTTGGTGGAAG
TTAG
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