mRNA_C-tenellus_contig1052.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1052.1.1
Unique NamemRNA_C-tenellus_contig1052.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1052.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1052contigC-tenellus_contig1052:80..5393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2629
Hectar predicted targeting categoryother localisation
Exons4
Cds size2628
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.1183107-CDS-C-tenellus_contig1052:79..13781680789136.1183107-CDS-C-tenellus_contig1052:79..1378Choristocarpus tenellus KU2346CDSC-tenellus_contig1052 80..1378 -
1680789136.1297855-CDS-C-tenellus_contig1052:2806..29051680789136.1297855-CDS-C-tenellus_contig1052:2806..2905Choristocarpus tenellus KU2346CDSC-tenellus_contig1052 2807..2905 -
1680789136.1386235-CDS-C-tenellus_contig1052:3660..37611680789136.1386235-CDS-C-tenellus_contig1052:3660..3761Choristocarpus tenellus KU2346CDSC-tenellus_contig1052 3661..3761 -
1680789136.146703-CDS-C-tenellus_contig1052:4264..53931680789136.146703-CDS-C-tenellus_contig1052:4264..5393Choristocarpus tenellus KU2346CDSC-tenellus_contig1052 4265..5393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1052.1.1prot_C-tenellus_contig1052.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1052 80..5393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1052.1.1

>prot_C-tenellus_contig1052.1.1 ID=prot_C-tenellus_contig1052.1.1|Name=mRNA_C-tenellus_contig1052.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=876bp
MKKNSDPAVTSLSQIKRRKEVEATEYELMSSFPACPRPGRPPPSSRLLYE
LLVHRAPHLGGCLGVIGRSNTNHDRNGSAGDDGDSVCEQGLGGCDLSSEC
RGLLVHRLGNAGRLAWVALAPVVQEFLMEQDRVRLRQVRKAWLYETSTIG
GKDDGCSWGKDISSRKQVRERNRGSSARDTVQMCENDAFKGCRPEGDNRS
WAKENKGPCALSYGGKLHAGRGWDDRDGSSIGSHAKQWRNDGNLGVGRNL
LHKKECESSETQQRRLPSHVFSSSDFSSSLTSQDIKLASPKACVRAGVEL
RGLIMRDHLVKPLKKIVEPPSQGREYCSFEAMSGERLQSHLASKFSSIRP
RCSMEYYQSWLLRRGRASQDRGCKEEASTVRTNSSQAHLLDMKKTRTGAL
GIQRSSPVEEELAQEISDITSSPCTHQNKVFILNLDEAMHSRQRHHQHFN
KESTKDTIIKPADNCEGQAHGIRRIPHPPTSSSTRSVGKHPCHRFALTMS
RQAQVRGTTKTDDGLSKQSVECVHSIPVRRQGWVLRWKKQRGKNKEEAAC
EPEGGLQPKQVQGQGSEQREWTTAVIAPRFSTLDNLLLQVSGSLGETGEP
MVGRGEEYTSVGITTSVCEGIIADAGVHCGSNRANAGKDVCVSEDPMLEG
LDGGNLKHQLEKSDKRCDSQEQYHCVDASDRDSTPLIAEATVGNTSARLP
KGLELFSLSPMGSEDGAVKCQIVTTTAIYAGVSMSETCAENDESVKVEEG
TGNEENERATIEVGPAANNIDKAYSDVSLAAAPAEGATTTLVNATHHGVE
QSGVEKHDAMQEHWKGGGEGEVEKFPGQLQGRRQQGSHHSEITGKEIHEE
KEARPQEHALPSTTADVASAADAESK
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mRNA from alignment at C-tenellus_contig1052:80..5393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1052.1.1 ID=mRNA_C-tenellus_contig1052.1.1|Name=mRNA_C-tenellus_contig1052.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5314bp|location=Sequence derived from alignment at C-tenellus_contig1052:80..5393- (Choristocarpus tenellus KU2346)
ATGAAAAAAAATTCAGATCCAGCTGTGACCTCGTTGTCACAAATTAAGCG
CCGCAAGGAAGTTGAGGCTACAGAGTATGAGCTGATGTCCTCGTTTCCCG
CATGCCCTCGCCCTGGTAGACCTCCTCCTTCTTCCCGCTTGCTCTATGAA
CTCCTTGTTCACCGCGCCCCCCACCTGGGTGGTTGCCTTGGAGTCATAGG
TAGATCAAATACTAACCATGATCGTAATGGCAGCGCTGGAGATGATGGTG
ATAGTGTTTGCGAACAGGGCTTGGGGGGTTGCGACCTATCGTCTGAGTGT
CGAGGATTACTAGTTCATAGACTTGGCAATGCTGGCCGACTTGCGTGGGT
AGCTCTTGCCCCTGTTGTACAGGAGTTTTTAATGGAACAAGATAGAGTAA
GGTTACGACAAGTAAGGAAGGCGTGGTTGTATGAGACCTCTACTATTGGG
GGTAAAGACGATGGTTGCAGCTGGGGGAAGGATATTTCTTCTAGAAAACA
AGTGCGGGAGCGCAACAGAGGAAGTAGTGCTAGAGATACAGTTCAAATGT
GTGAAAATGATGCATTCAAGGGTTGCAGACCTGAAGGTGACAACCGTAGC
TGGGCGAAGGAAAACAAAGGGCCTTGTGCACTCTCTTATGGGGGAAAACT
GCATGCAGGTCGGGGTTGGGACGATAGAGATGGAAGCAGTATTGGCAGCC
ATGCTAAACAGTGGAGGAATGACGGCAACCTAGGCGTTGGGAGGAACCTA
CTCCATAAAAAAGAATGTGAATCATCAGAGACACAACAGCGGCGGCTTCC
TTCGCATGTATTCTCTTCATCAGACTTCTCCAGTTCTTTGACCTCCCAAG
ACATCAAGTTGGCCTCTCCCAAAGCATGTGTAAGGGCGGGGGTGGAGTTG
AGGGGATTGATAATGAGGGATCACCTCGTGAAACCCTTAAAAAAAATTGT
TGAACCCCCTTCCCAAGGTAGAGAATATTGCTCATTTGAAGCTATGTCCG
GGGAGAGGCTGCAGTCACATCTTGCATCAAAATTTTCATCGATCAGGCCA
AGGTGCTCTATGGAATATTACCAATCTTGGTTACTTAGGAGAGGGAGAGC
ATCTCAGGATAGAGGATGTAAGGAAGAAGGTGAGGACTACGAGTGCATTA
AATGGTATCCAGGAAGGGTGAAGAAGTGGATAGTGGACACATCAAAAGTC
CGTTTGGAGGATGTAGGGAAAAGACATTCCTAAATTGCTCCAATTGGGAC
ATGTTCCTAGGTATAGTCATTCAAGAAAATAATCCCTTGCGAACCTCAGA
TTCAAATAAGAATCCCAATCGTGTGAGTATATATTTGCAGTTTGACACAA
GCCTATGTTGAGACAAGAAGGCAGTCAGGTAGGAACACACCTTGGCAGCA
CACAGCAAGGCTCCTGCACCTGGCATAGGATAAGCAGAGCAAGCGCATCT
ACTGCTTAAACCTGATTGCTTCTGGATGTGATATGAATGTTGCGTATATT
TCACTTCCCCCACAGCCTTCCTCTGCTATCCTTAAACTTTATTCCCTCAC
TTGTGACCACACAATGCCACATATCTTCCTTATCAAGCCTCACTTCACTC
TGACTGGCATGCTCCACTCTGTTCACCACAAGCGTCTACTGTAAGGACAA
ATTCCTCCCAGGCTCACCTTCTTGACATGAAGAAGACACGCACTGGGGCA
TTGGGGATACAAAGATCATCTCCAGTTGAAGAGGTGAAAGAGGAATCTGA
GTCAAGGCATCTTAAAGAGTAGAGCCGCGTCCACTCGGGGGCAAAAATCG
GATGTTGCAATTTTGATGTAATATTGGCTATCGTATTTGTTAGGAAGTAT
CAATATCCTTGTTCCGAACACACCTTTTCATAACATATACATTTTACCTG
CTTTGAAACATTTTGGAGTAGGAAAATGTCATAAAAAAACCCATGGTAAG
CTAAGCCCCAAATGGACAAACAGGGCAAAACTCGTACCCTCTAAGACACT
TTCACTCACCTGAGTATATGTATCAACTTAACCAGAACATTTCAACTTGC
CAACTACTCTCGACTCTCTTCTTCATATGCCCTCCAAGGAATCAAGTGTC
TCACAGTTACACACATACTCCAACTAGAAACCCTGAAGCACATCAACTCC
TGCCAAAAAAAAATCGACCCACAATATCATCCCACGATTTCCATCTGGTC
CCGTTTGGAAATACAACACCAGGCTCCTCATCAATGCGGAACTGTATTAA
GCCATAATCAAGAACAGGGTCTACTAGATTAAATTATTTATTTCTGTGTG
GAGATTTGGTATTTCACTCTCACGTAACAGACTGGCATGCCGAATTTTCG
TATTTTGCCTAGCCATATGAATGTAGTGGAACAAAACTTGGCTTATCTAA
AGCCAGATCTCCAACCCCTAATCACCATGGCACACGTGCTGGGCAGTGTT
CTTAACATTATTGGTCTGTGTTTATTCCCTTCCCCCAGGAACTTGCTCAA
GAGATTTCTGATATCACTTCCTCTCCTTGCACCCACCAGAACAAAGTCTT
CATCCTCAACCTGGATGAAGCCATGCATTCACGACAGGTCTGCAACGCTC
GCTGAGGTTGACCTAAGAACTGCCCTCCCAAACTTGAACAATACTTCAGT
CTAGTAACAATATATTTCTCCCTCGTACTTTCAGAGGGTCAGCTGTGTGT
ACTGGTTATTATCTACTCCTCAGAACAAGGAGAGCTAGCCGTGCCCACAA
CGATAAGCATCACTATGTACAATTGCGATCAACTTGAACATGGCAAGTAC
CTCTAAATATCCTGCCAGAACATTCCTGTATTGTATTCTACTTCATATCA
TACCATAATGCACCGACAACTGACTCATTGCCCTGCACACCGTGTACATT
TTGCTTCAAATAATTCCCCGAAATTACATTTAGGATCGCACCACTCTGTA
CTACACAAACAATGAATAGCACTAATCAGTGGCACAAATCTCCAGGCATT
GTCAGGCAGTCTACCAAATGACATAAAATTGAAACATGCAATAGAGGCAG
TGGGCCGACATTGTGGTCTGCCTTTGAGCCAAGGTATCTTAGAGGGTAGA
GTCGCGTCCATTTGGGGGCCAAAATTCAATGTTGCGATTTTGATGTAATT
TGGCTTTCGTGTTTGTTAGGAAGTGTCAATACCTTTGTTTCGGACACACC
TTTTCTCAACGTATACCTTTTACCTACTCCGAAACATTTTGGAGTAGGAA
ATGTCATAAAAAAAACATGGGAAGCCAAGCCCCGTATGGACAAACAGGGC
AAAACTTGTACCCTCTAAGGTACTTTCACTCATTTTGCATACTGAAACAT
TTAGAGGGTTTAACTCAACACACTTGTTTTTTGAGACTTGGTCCTGCTCA
ACTCCGATCCGGGGCTGCATGCCAAATGAAGTAATGTCTCTCTAGTCCTC
CCCTCACAACAAACTCTCTTCAAATTGAGCTCTCTGAGCATTCAGAAGAT
AAAAAATTGTTGCATTTTGTCAGACAGAGTAGGTCTCCCCAAGTTCGGAT
TTACACGAAGAGTGTTCAAGACAATTTAAAAATCCAACTGACAGTTATCT
GACAGTTTAGTCATGTGAAGGTTTCCAGTATCCAAGGCAATGGTACGAAT
AGCAACATAAGCCATGTGAACTTACTCTGGAGGAAGACTCTCAGATAGAT
CTCTGTACATTACTGTGATAGCTAAATTTACTGCTTTATGCTGAGCGCCC
CCAGAGATAGGCCCAAGGACGACTAAGAATGTGCTGTGCACTTCTCAAGC
ACGGCAACATTCATGGCATGCATTTGTTCCTCTCATTTCAGGGTCTCACC
AGTCGCCCGCCCCACCCATGACAACGCAACTTGCCTCATGTAGAAAAGAC
AAGCACAATGACGAACATAAAATGAGAGTGAGTACATTGCCTCTCTCACT
CTAAGCAAAGGCACCCCATTCCTCCTTTTTCCATTACTACCTCTAATCTT
CATCCTGGTACGCAGAGACATCATCAACACTTTAACAAGGAGTCCACAAA
GGACACAATAATAAAACCAGCAGACAACTGTGAAGGACAAGCACATGGCA
TTAGAAGAATCCCTCACCCACCAACCAGTTCCTCAACAAGAAGTGTGGGA
AAACATCCCTGCCACCGTTTTGCTCTCACAATGTCGAGGCAAGCCCAAGT
AAGGGGTACAACCAAGACTGATGATGGTCTTTCCAAACAATCAGTTGAGT
GTGTGCATTCCATTCCGGTGAGGAGGCAAGGCTGGGTGCTTCGGTGGAAA
AAACAAAGGGGAAAAAACAAGGAGGAGGCTGCCTGCGAACCTGAAGGTGG
GCTCCAACCAAAACAGGTGCAGGGACAGGGGTCCGAGCAGAGAGAATGGA
CCACGGCAGTCATAGCGCCCCGATTCTCAACCCTGGATAACCTGTTGTTG
CAAGTTTCTGGGAGCCTTGGAGAGACAGGGGAACCCATGGTGGGAAGGGG
TGAAGAATATACCAGTGTTGGTATTACAACCAGTGTCTGTGAAGGTATTA
TAGCTGATGCTGGTGTGCACTGTGGCAGTAACAGAGCCAATGCTGGAAAA
GACGTGTGTGTGAGTGAAGATCCGATGTTAGAGGGTTTGGACGGGGGCAA
TTTGAAGCACCAATTAGAGAAATCGGATAAAAGATGCGATTCCCAAGAAC
AATACCACTGTGTTGATGCATCGGACCGTGACTCCACCCCCCTTATCGCT
GAAGCAACTGTGGGAAATACATCAGCCAGGTTACCTAAGGGGCTAGAACT
CTTTAGTCTATCACCAATGGGATCTGAAGACGGGGCAGTAAAATGTCAGA
TAGTCACAACCACAGCCATATATGCTGGGGTATCAATGTCAGAGACATGT
GCAGAAAATGATGAGAGTGTGAAGGTGGAGGAAGGGACAGGTAATGAGGA
AAATGAAAGAGCAACCATAGAGGTGGGGCCAGCGGCAAATAACATCGACA
AGGCATACTCTGACGTATCATTGGCAGCAGCACCAGCTGAGGGTGCCACA
ACTACATTGGTGAATGCTACTCATCATGGGGTGGAACAGAGTGGGGTTGA
AAAACATGATGCTATGCAGGAGCATTGGAAGGGGGGAGGGGAGGGAGAGG
TGGAGAAATTTCCGGGCCAGTTGCAGGGGAGAAGACAACAAGGTAGTCAT
CATAGTGAAATCACTGGCAAGGAGATCCATGAGGAAAAGGAAGCTAGGCC
TCAGGAACATGCCTTACCATCGACTACAGCTGATGTTGCTAGTGCAGCGG
ATGCTGAGAGTAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1052:80..5393-

>mRNA_C-tenellus_contig1052.1.1 ID=mRNA_C-tenellus_contig1052.1.1|Name=mRNA_C-tenellus_contig1052.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=2628bp|location=Sequence derived from alignment at C-tenellus_contig1052:80..5393- (Choristocarpus tenellus KU2346)
ATGAAAAAAAATTCAGATCCAGCTGTGACCTCGTTGTCACAAATTAAGCG
CCGCAAGGAAGTTGAGGCTACAGAGTATGAGCTGATGTCCTCGTTTCCCG
CATGCCCTCGCCCTGGTAGACCTCCTCCTTCTTCCCGCTTGCTCTATGAA
CTCCTTGTTCACCGCGCCCCCCACCTGGGTGGTTGCCTTGGAGTCATAGG
TAGATCAAATACTAACCATGATCGTAATGGCAGCGCTGGAGATGATGGTG
ATAGTGTTTGCGAACAGGGCTTGGGGGGTTGCGACCTATCGTCTGAGTGT
CGAGGATTACTAGTTCATAGACTTGGCAATGCTGGCCGACTTGCGTGGGT
AGCTCTTGCCCCTGTTGTACAGGAGTTTTTAATGGAACAAGATAGAGTAA
GGTTACGACAAGTAAGGAAGGCGTGGTTGTATGAGACCTCTACTATTGGG
GGTAAAGACGATGGTTGCAGCTGGGGGAAGGATATTTCTTCTAGAAAACA
AGTGCGGGAGCGCAACAGAGGAAGTAGTGCTAGAGATACAGTTCAAATGT
GTGAAAATGATGCATTCAAGGGTTGCAGACCTGAAGGTGACAACCGTAGC
TGGGCGAAGGAAAACAAAGGGCCTTGTGCACTCTCTTATGGGGGAAAACT
GCATGCAGGTCGGGGTTGGGACGATAGAGATGGAAGCAGTATTGGCAGCC
ATGCTAAACAGTGGAGGAATGACGGCAACCTAGGCGTTGGGAGGAACCTA
CTCCATAAAAAAGAATGTGAATCATCAGAGACACAACAGCGGCGGCTTCC
TTCGCATGTATTCTCTTCATCAGACTTCTCCAGTTCTTTGACCTCCCAAG
ACATCAAGTTGGCCTCTCCCAAAGCATGTGTAAGGGCGGGGGTGGAGTTG
AGGGGATTGATAATGAGGGATCACCTCGTGAAACCCTTAAAAAAAATTGT
TGAACCCCCTTCCCAAGGTAGAGAATATTGCTCATTTGAAGCTATGTCCG
GGGAGAGGCTGCAGTCACATCTTGCATCAAAATTTTCATCGATCAGGCCA
AGGTGCTCTATGGAATATTACCAATCTTGGTTACTTAGGAGAGGGAGAGC
ATCTCAGGATAGAGGATGTAAGGAAGAAGCGTCTACTGTAAGGACAAATT
CCTCCCAGGCTCACCTTCTTGACATGAAGAAGACACGCACTGGGGCATTG
GGGATACAAAGATCATCTCCAGTTGAAGAGGAACTTGCTCAAGAGATTTC
TGATATCACTTCCTCTCCTTGCACCCACCAGAACAAAGTCTTCATCCTCA
ACCTGGATGAAGCCATGCATTCACGACAGAGACATCATCAACACTTTAAC
AAGGAGTCCACAAAGGACACAATAATAAAACCAGCAGACAACTGTGAAGG
ACAAGCACATGGCATTAGAAGAATCCCTCACCCACCAACCAGTTCCTCAA
CAAGAAGTGTGGGAAAACATCCCTGCCACCGTTTTGCTCTCACAATGTCG
AGGCAAGCCCAAGTAAGGGGTACAACCAAGACTGATGATGGTCTTTCCAA
ACAATCAGTTGAGTGTGTGCATTCCATTCCGGTGAGGAGGCAAGGCTGGG
TGCTTCGGTGGAAAAAACAAAGGGGAAAAAACAAGGAGGAGGCTGCCTGC
GAACCTGAAGGTGGGCTCCAACCAAAACAGGTGCAGGGACAGGGGTCCGA
GCAGAGAGAATGGACCACGGCAGTCATAGCGCCCCGATTCTCAACCCTGG
ATAACCTGTTGTTGCAAGTTTCTGGGAGCCTTGGAGAGACAGGGGAACCC
ATGGTGGGAAGGGGTGAAGAATATACCAGTGTTGGTATTACAACCAGTGT
CTGTGAAGGTATTATAGCTGATGCTGGTGTGCACTGTGGCAGTAACAGAG
CCAATGCTGGAAAAGACGTGTGTGTGAGTGAAGATCCGATGTTAGAGGGT
TTGGACGGGGGCAATTTGAAGCACCAATTAGAGAAATCGGATAAAAGATG
CGATTCCCAAGAACAATACCACTGTGTTGATGCATCGGACCGTGACTCCA
CCCCCCTTATCGCTGAAGCAACTGTGGGAAATACATCAGCCAGGTTACCT
AAGGGGCTAGAACTCTTTAGTCTATCACCAATGGGATCTGAAGACGGGGC
AGTAAAATGTCAGATAGTCACAACCACAGCCATATATGCTGGGGTATCAA
TGTCAGAGACATGTGCAGAAAATGATGAGAGTGTGAAGGTGGAGGAAGGG
ACAGGTAATGAGGAAAATGAAAGAGCAACCATAGAGGTGGGGCCAGCGGC
AAATAACATCGACAAGGCATACTCTGACGTATCATTGGCAGCAGCACCAG
CTGAGGGTGCCACAACTACATTGGTGAATGCTACTCATCATGGGGTGGAA
CAGAGTGGGGTTGAAAAACATGATGCTATGCAGGAGCATTGGAAGGGGGG
AGGGGAGGGAGAGGTGGAGAAATTTCCGGGCCAGTTGCAGGGGAGAAGAC
AACAAGGTAGTCATCATAGTGAAATCACTGGCAAGGAGATCCATGAGGAA
AAGGAAGCTAGGCCTCAGGAACATGCCTTACCATCGACTACAGCTGATGT
TGCTAGTGCAGCGGATGCTGAGAGTAAG
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