mRNA_C-tenellus_contig10475.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10475.1.1
Unique NamemRNA_C-tenellus_contig10475.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10475.1.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.280e-15
Identity = 83/252 (32.94%), Postives = 118/252 (46.83%), Query Frame = 1 
Query:  775 RRRALWHLLSCVAKTIEWFRDLEDRCDDT------------RDWKCLEVAESRCLVSMAALGNVRVGPSLLTQPLRSALA--------PALGLKQRTPPTES-LWEGQGDSGEDKGVATPSSMSWSSLATFAEGEDNPDA-AEVPGVGGEGPGNGVH---------IDSLGLDGVGKHLMLMCKALLLCTASRSTAVRAAAAGLLARANIPGIYDSLEMQVAALK-------AELFRRDREVEKLQGQLAAG 1416
            RRRA WHLL CV  T   FR LED  D              R    L +   RC   +A +G VR+ P+LLT   +  +A        P +  + R   T S    G G    D   A P    W+S+A   EGE N    + + GV        V                    +HL+L+C+ALL C+ASR+  VR++ A LLA A+IPG  D+L+ +VA+L+       A+L ++D +++ L+ Q+AAG
Sbjct: 1167 RRRACWHLLRCVWSTTHRFRKLEDEVDAADAPARTPPEDMARLRSSLALRADRCASVLATVGKVRLPPTLLTPRFKKLVATKQGQDNLPLVNTQARAATTGSPALAGAGGVDGDGEQAGPEDAVWASMAE--EGEQNAAVDSSILGVDATSRSEAVEGGXXXXXXXXXXXXXXXXREHLILLCRALLTCSASRTERVRSSTALLLADADIPGALDALQYEVASLRRALRQREAQLTQKDSQMDDLRAQVAAG 1416
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BLAST of mRNA_C-tenellus_contig10475.1.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.640e-10
Identity = 80/274 (29.20%), Postives = 112/274 (40.88%), Query Frame = 1 
Query:  775 RRRALWHLLSCVAKTIEWFRDLEDRCD-----------DTRDWKC-LEVAESRCLVSMAALGNVRVGPSLLTQPLRSALA--------PALGLKQRTPPTES--LWEGQGDSGEDKGVATPSSMSWSSLATFAEGEDNPDAAEVPGVGGEGPGNGVHIDSLGLDGVG-------------------------------KHLMLMCKALLLCTASRSTAVRAAAAGLLARANIPGIYDSLEMQVAALK-------AELFRRDREVEKLQGQLAAG 1416
            RRRA WHLL C   T   FR LED  D           D    +  L +   RC   +A +G VR+ P+LLT   +  +A        P L  + R   T       G G    D   A P    W+S+A   EGE+N                                                            +HL+L+C+ALL C+ASR+  VR++ A LLA A+IPG  D+L+ +VA+L+       A+L R+D ++  L+ Q+AAG
Sbjct: 1964 RRRACWHLLRCAWSTTYRFRKLEDEVDAADAPARTPPEDMAQLRSSLALRADRCACVLATVGKVRLPPALLTPRFKKLVATKQGQENLPLLNTEARRATTTGSPALAGAGGVEGDGEQAGPEDAVWASMAE--EGEENAAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREHLILLCRALLTCSASRTERVRSSTALLLADADIPGALDALQDEVASLRRALRQREAQLTRKDSQMGDLRAQVAAG 2235
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPX0_9PHAE1.280e-1532.94Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LQH8_ECTSI6.640e-1029.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10475contigC-tenellus_contig10475:1148..5063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQH8
PFAMsDCB,DUF1981,Mon2_C,Sec7_N
Model size2789
Max annot lvl2759|Eukaryota
KEGG koko:K18466
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.15e-08
EggNOG OGsKOG1848@1|root,KOG1848@2759|Eukaryota
Descriptionprotein transport
Cds size522
COG categoryKLT
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10475.1.1prot_C-tenellus_contig10475.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10475 2554..3495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789133.4575267-UTR-C-tenellus_contig10475:1147..15321680789133.4575267-UTR-C-tenellus_contig10475:1147..1532Choristocarpus tenellus KU2346UTRC-tenellus_contig10475 1148..1532 -
1680789133.4715097-UTR-C-tenellus_contig10475:1543..18191680789133.4715097-UTR-C-tenellus_contig10475:1543..1819Choristocarpus tenellus KU2346UTRC-tenellus_contig10475 1544..1819 -
1680789133.4818876-UTR-C-tenellus_contig10475:1856..25531680789133.4818876-UTR-C-tenellus_contig10475:1856..2553Choristocarpus tenellus KU2346UTRC-tenellus_contig10475 1857..2553 -
1680789133.518646-UTR-C-tenellus_contig10475:3495..35081680789133.518646-UTR-C-tenellus_contig10475:3495..3508Choristocarpus tenellus KU2346UTRC-tenellus_contig10475 3496..3508 -
1680789133.5314653-UTR-C-tenellus_contig10475:4003..44661680789133.5314653-UTR-C-tenellus_contig10475:4003..4466Choristocarpus tenellus KU2346UTRC-tenellus_contig10475 4004..4466 -
1680789133.5456493-UTR-C-tenellus_contig10475:4630..50631680789133.5456493-UTR-C-tenellus_contig10475:4630..5063Choristocarpus tenellus KU2346UTRC-tenellus_contig10475 4631..5063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789133.4898067-CDS-C-tenellus_contig10475:2553..26491680789133.4898067-CDS-C-tenellus_contig10475:2553..2649Choristocarpus tenellus KU2346CDSC-tenellus_contig10475 2554..2649 -
1680789133.5060391-CDS-C-tenellus_contig10475:3069..34951680789133.5060391-CDS-C-tenellus_contig10475:3069..3495Choristocarpus tenellus KU2346CDSC-tenellus_contig10475 3070..3495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10475.1.1

>prot_C-tenellus_contig10475.1.1 ID=prot_C-tenellus_contig10475.1.1|Name=mRNA_C-tenellus_contig10475.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=174bp
MAALGNVRVGPSLLTQPLRSALAPALGLKQRTPPTESLWEGQGDSGEDKG
VATPSSMSWSSLATFAEGEDNPDAAEVPGVGGEGPGNGVHIDSLGLDGVG
KHLMLMCKALLLCTASRSTAVRAAAAGLLARANIPGIYDSLEMQVAALKA
ELFRRDREVEKLQGQLAAGRSFF*
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mRNA from alignment at C-tenellus_contig10475:1148..5063-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10475.1.1 ID=mRNA_C-tenellus_contig10475.1.1|Name=mRNA_C-tenellus_contig10475.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3916bp|location=Sequence derived from alignment at C-tenellus_contig10475:1148..5063- (Choristocarpus tenellus KU2346)
CAAGAAATACCGTTTTTTTCGGTTCCGCTTCTTGGACGTATTCAGAACTA
TTTCGGAACAAAATACGAAAACCGGAATTCCCCTCCGAACGATTATATCC
AGACCTTCAATTTTTAGCGTTGCATCACTCGGAAAGGCTTCCTATTCATG
AAGAAATTGCCAGGAAAAAAATGTGAAACTTTGTAGGTCGCAGACATAGA
GGATAAGAGGGAGAAGTAGTATTTGCTACTTCTAAGAACAAGAACAATGT
ACTGTGGTAGACCTACGTATTTTATTTGTTTGTTTAGTAGTTGACCAAAG
AACGGACTTGGGATCTTTTATCATTAGGTTGGCTGTTGTGTGTGTGTGTG
TGTGTTGATAGAGGTGTTAATTTTTTATTCTCTTTATTAGACGCTTTGGA
CCATTGACATTCGCTGTGAAAAGAATCAAAATAAAATATTTTGACTAAGT
GATGGATGACCTAGATCCAGACTTGCTCTGTGCAAGAGAATGTGTATCTC
AGGAGAGTCAAACCGTCGCATGTTACGGCGGCATATAACCAAAATCCTCT
TTTTGAGAACAGAATAGTCTTTGTTCGAGCGCAATTTATTTCTTGGCCTG
TTGGCATGATGCCGAAGACTTGCTCTAAATTCTCCGGAGTGTGTGCACAT
GATTCAGTAGTGGAATGTCCTCCATATTGTTAGAGGTTCACTTCACGCAA
AAGCAAATGTAAAAGAGATTCGAGAGATGCAATGCTAGTCAATGCTAGTC
ACTGGTAGTCGCCGTTAATCAACATCAGATGATCAATAGTACACACTGTG
CTCACGAAGTGTTTGAGTGCAAATTGTGCGGAGTGACTCTAACGACTTTC
GCTTGGACGTTTGTGCCTCTCCTTTCACTGTTGACGTTCTTGCTGCGTCA
TTGTCATCATACTACTTTACTTCATGGTGCTCTGATACAGGCGAAGGGCG
CTCTGGCACCTCCTGTCCTGTGTGGCGAAGACCATAGAGTGGTTCCGAGA
TTTGGAAGACCGCTGCGATGACACAAGGGACTGGAAGTGTCTTGAAGTGG
CAGAATCGAGGCAAGGAAATTAAACCACTCGGGAAGAGTCTGCCAAAATC
TCAGTAGAACGTCTTCAATGAAACGATCCCTTCAAATGGCAGTGAATGGG
AGGTCGTGTCGTACCCTAAACCTAACCCTAACCCTAACCCTAGCTGTCAA
CGACAGGTCGTGTCATCTCAAGGAGATTCAAGGAGGGGGAAAGGAATGGA
AAGAAAGAAAAAAAAATCAGGGAAGTGTGATTGACGTTCTGTTCTGCCTG
TGCAATGGGCCCGTATGCTGCGGGCTGGGTTGTTTATTGGTATACTAACT
AACGGGTGCTTAGAGCGAGTTCTGTTTTTTTTTAATAGGAGTTGGGTTTG
CAACCCCAAATGTTGGTTGACCCCAGTCAAAGTTCGAAAGTATATCCTCC
CTGTGGCTCTTGATTCAGGGCTGGTGCCTGAGGAGGGATTGTGGTTCTTG
ATTCACTGTTTGACCGTCCCTAGTGATCTTGTCCCCTTCTATCCACTTTT
GGCAGATGTTTGGTCTCAATGGCTGCCCTTGGCAATGTTCGGGTGGGCCC
ATCCCTCTTGACTCAGCCACTACGTAGCGCATTGGCACCGGCTCTAGGGC
TAAAGCAGCGTACACCTCCGACTGAATCTCTCTGGGAGGGTCAAGGCGAC
AGCGGTGAAGACAAAGGAGTTGCTACCCCTTCGAGCATGTCTTGGTCCTC
CCTTGCGACGTTTGCAGAGGGAGAAGACAACCCGGACGCAGCTGAGGTTC
CTGGAGTAGGAGGGGAAGGGCCAGGAAATGGTGTGCATATCGATAGCCTG
GGATTGGATGGGGTGGGTAAGCACTTGATGCTCATGTGCAAGGCTCTACT
GCTGTGCACTGCCTCTAGGTCTACAGCGGTTAGGGCAGCAGCGGCGGGTT
TGCTAGCAAGGGCTAATATCCCAGGAATATATGATTCACTTGAGGTGAGA
TGCAGAAGACATAAAAAATATATATGAACGTTTGAATAATTGGTATGTGT
TGTATCGTTAAAAGTTGTGGGCTAGTAATAGTGATATGTATATAGTTTGG
AGCTAGAAAAATATAATAATATTTACTGCATACTTGTGGAATGATTTCAG
TGTTCATGGCAGGGCGATTGTCCAAATGGAATCTGGGGGAACAGTTTGTG
CATCCTGCACATGGTTGTGTGAAGAACCTCTATGTTGGTGTGCTTCTCCA
AGGGGGTTGGTCCTTAAGTTACAATCCAATAGCTCAATCATTGGAGGTGC
AACCCTCTTGCTAATTAATGCCTTCGTAGGCATCTCTTAGTTTCCCTACA
TATTCACCCTAACCCCCAAATGCAATTGCCATGCATATTTCCCTTTCATT
ATTTCCCCCTACAGATGCAAGTAGCTGCCCTCAAGGCTGAGCTTTTCCGG
AGAGATCGCGAAGTGGAAAAACTGCAAGGCCAGTTGGCCGCTGGGAGGTC
ATTTTTCTGATCCGCATATCATATCACCTTATTTTTCACTTCATCACAAC
AGGCTGTCTGTTGAGGGGACTCTGTCCTTGCCTTACATGTTAAGTCTTTC
ATTGGCTCAGTATGGTCTTCTTTGCCTTGCCCCTTACGCACTTGTTGTAC
GGAAATAGTTTTTTTTTTCTAATACAGTGCCGTAATTATTCGTACGACCT
TGCTTCAGGTGTGCTACCAAGCACAGTACCTTCACACTGACTATAATACC
ACATTTTTCATTTTCGCACCTTCTGCACAAGCTCGGGTGCTGGGTATGCT
TCCTGGGTGTGCATCTTTCCCATCCATGTTGGGATGTCTGTTTTGCGTCT
ATTTCGTCTTTTTCTTCCGAGTAAAAGGGCAGATGAGAGACGGTTTCGTC
GTTGCTGACGTCTTGGTGATGGTTGATTTGATGCTATGCTTCGAACAAGG
AAACTAATTATTCCTAGTATCACGAAAAAGAAACGTGCATGCAAGCAACA
TCATGTGAGTGGTATTCTACTCCACTATTGTTGTAACTGGTTGTTGCTGT
GTTGCTATTAGTATGCTACAGTAATACTACAGAGTCTATCATCAGACAAC
ATGAAAAACGACTCATGTTCTCTGATACACTTCCTGATATCCAACACACC
TATGCCTTGCCGTCATCATGTTCGAGTATTTCGTTTCTCCTGTAATACTC
CTGTGGAGTACTCAGGAAATATTGTTGACCACATGCTATCTTAATTGCTG
CAAGGAGAGTATACTTGAAATGCTCGGCAATGTTTTGAAGGATAGGCAGG
AGGAGCTCTGCCTGAGAACCCACCTCTGGTGTTCTTGCTGCTGCGTGTGC
CTTCTCTGAATACTGCAGTTAGCTGCACAAGTAAATAAAATACTCCTATA
CGTCACCTTACTGACAAGGCAAACCCTCTTACCCTTCTGGAACTGCAACA
CTTGGGGAAGTTTTGAGAGTTGAGAGACCACCGACATGTATGTCTGATCT
GGTGGTGTATTGTGGTTGGTGTGACCAAAAGCTTACTATTTTTGCATATA
GTGAGGTGAGGTGGTATTGGGGAAAGGGGAATAGGTGATGTTGAATGCAT
CTTCTTTCTGGTAATGGGATCCCAAACAGGCAAAGAATTTGGGAAGCAAC
TCTGTATTCCTAGTGGTGGTTGTAGTGGAATCCTTCAAAATGTAAAAGCA
GACACGAAATGTTTGCTGTCACGCCCAACATTTGTGCAATGTTCTGCCTG
TACTGCATAATCCTCGTAGCTAGTTCTAATGAAGAACATCTCATATTCAG
TCTGCAATGAATCTTATTAAGGAAAATGTTGAAGCCGATTTGTTCTGTAT
TGTATCTTCCAGGACAACGTTTGAGCACCAGTTGCTTCATAGTGTCCATC
GACCATGAAATGCCCG
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Coding sequence (CDS) from alignment at C-tenellus_contig10475:1148..5063-

>mRNA_C-tenellus_contig10475.1.1 ID=mRNA_C-tenellus_contig10475.1.1|Name=mRNA_C-tenellus_contig10475.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=522bp|location=Sequence derived from alignment at C-tenellus_contig10475:1148..5063- (Choristocarpus tenellus KU2346)
ATGGCTGCCCTTGGCAATGTTCGGGTGGGCCCATCCCTCTTGACTCAGCC
ACTACGTAGCGCATTGGCACCGGCTCTAGGGCTAAAGCAGCGTACACCTC
CGACTGAATCTCTCTGGGAGGGTCAAGGCGACAGCGGTGAAGACAAAGGA
GTTGCTACCCCTTCGAGCATGTCTTGGTCCTCCCTTGCGACGTTTGCAGA
GGGAGAAGACAACCCGGACGCAGCTGAGGTTCCTGGAGTAGGAGGGGAAG
GGCCAGGAAATGGTGTGCATATCGATAGCCTGGGATTGGATGGGGTGGGT
AAGCACTTGATGCTCATGTGCAAGGCTCTACTGCTGTGCACTGCCTCTAG
GTCTACAGCGGTTAGGGCAGCAGCGGCGGGTTTGCTAGCAAGGGCTAATA
TCCCAGGAATATATGATTCACTTGAGATGCAAGTAGCTGCCCTCAAGGCT
GAGCTTTTCCGGAGAGATCGCGAAGTGGAAAAACTGCAAGGCCAGTTGGC
CGCTGGGAGGTCATTTTTCTGA
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