mRNA_C-tenellus_contig10469.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.060e-21 Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 2132 EDVYEQYCTLNHLRYRKWYMEELLPAIKTKMP*LLRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMV 2455 ++ YE CT++ Y+ WY++ LLPAIK KMP L K +V+QQD A+PHTGK N EIL AG GW + LV QP+ SP+LNI L F SLK RV SI+E+V Sbjct: 257 QEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: UPI000CD83630 (uncharacterized protein LOC111906923 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD83630) HSP 1 Score: 95.1 bits (235), Expect = 9.710e-19 Identity = 49/140 (35.00%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 2177 RKWYMEELLPAIKTKMP*LLRKH---IVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTG 2587 R W++E++LP I+ K P R H I IQQD+A PH ++++ L + G+ IRL QPSNSP+LN++ L FFR+++ +E G+I+E+V ++ +E+ L + L +++R +GGN++ + H G Sbjct: 16 RSWFIEKVLPDIRAKWP---RSHVGPIFIQQDNAKPHIDVNDNDFL-EVASSDGFDIRLNFQPSNSPDLNVLDLGFFRAIQSLQEQEALGTIDELVHAVQTSFEKMQSQQLNNVFLTLQTCMMEIIRVQGGNNYQIPHIG 151
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: A0A484KKG0_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KKG0_9ASTE) HSP 1 Score: 96.7 bits (239), Expect = 2.240e-18 Identity = 52/169 (30.77%), Postives = 92/169 (54.44%), Query Frame = 2 Query: 2174 YRKWYMEELLPAIKTKMP*LLRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTGVRKRQLSVKLENTPKVDMEALFVADKMVMDG 2680 YR ++++LPAIK K+P + KHI+IQQD+A PH ++ E + G+SI L QP NSP+LNI+ L FF S++ + +++E+V+ + + Y + L W + ++++ +GGN++ + H G + + L N +V + L+ A + G Sbjct: 89 YRTLMIQQVLPAIKEKVPEAITKHIIIQQDNAKPHIDVNDPEFV-QVANADGYSIELTCQPPNSPDLNILDLGFFASIQSLQHQTSTRNVDELVQHVAQAYANLEAKKLNYVWISYQLAMTEIMKVQGGNNYKLAHIGKARLEREGALPNQLQVSTK-LYQASVCALQG 255
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1) HSP 1 Score: 97.8 bits (242), Expect = 4.210e-18 Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 2 Query: 2189 MEELLPAIKTKMP*LLRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTG 2587 +E+++PAI K P +R I+IQQD+A PH +N+E + A K G+ IRL+ QP NSP+LN++ L FFRS++ E+ +IEE+V +K+ ++EY L R + +++++KG ND+ + H G Sbjct: 199 IEKVIPAIHAKWPQGMRT-IIIQQDNAKPHIDCNNAEFMQAASKD-GFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMG 329
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: A0A6A4ECW5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ECW5_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 7.190e-18 Identity = 59/176 (33.52%), Postives = 97/176 (55.11%), Query Frame = 2 Query: 2156 TLNHLRYRKWYMEELLPAIKTKMP*LLRKH-IVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTGVRKRQLSVKLENTPKVDMEALFVADKMVMDG 2680 T+N Y+++ +E ++PAIK+K P + IVIQQD+ATPH + +IL AG GW+IRL QP+NSP+LN + L +F S++ E I ++++ I+K Y + L+ L V+R G N++ + H G K + KL ++ D++A A ++ +G Sbjct: 286 TVNREVYKRYLLEHIIPAIKSKWPVWDKSSPIVIQQDNATPHCQPTDPDIL-AAGVADGWNIRLAFQPANSPDLNTLDLGYFASIQALPYREDCCDIVQLIQAIRKSYAALEVYKLDNITLTLQSSMECVMRAAGSNEYKLPHAGKSKIRREGKLPHSFPCDLDAFRHAVAVLHEG 460
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: A0A0A9BDH3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9BDH3_ARUDO) HSP 1 Score: 90.9 bits (224), Expect = 2.880e-17 Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 2 Query: 2177 RKWYMEELLPAIKTKMP*L-LRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTGVRKRQLSVKLENTPKVDMEALFVADKMVMDGE 2683 R + +E++LPAI+ K P K I IQQD+A PH N ++ A K G+ IR+V QP+NSP+LNI+ L FF SL+ + + EE+V + K +EEY + R + L N+++R G N +++ H +RK L + ++ +A V + M E Sbjct: 15 RSFMIEKVLPAIRVKWPREDASKPIFIQQDNARPHIAP-NDKLFCEAAKQDGFDIRIVCQPANSPDLNILDLGFFNSLQSIQQKTTCKTKEELVAAVDKAFEEYQVSKANRIFLTLHGCLNEIMRIGGNNSYNIPH--IRKAMLERQGHLPLQLKCDAALVNEVMAKINE 181
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3) HSP 1 Score: 95.1 bits (235), Expect = 7.400e-17 Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 2177 RKWYMEELLPAIKTKMP*LLRKH---IVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTG 2587 R W +E++LP I+ K P R H I IQQD+A PH +++E L A + G+ IRL QPSNSP+LN++ L FFR+++ +E G+I+E+V ++ +E+ L + L ++++ +GGN++ + H G Sbjct: 269 RSWLIEKVLPDIRAKWP---RSHVGPIFIQQDNAKPHIDVNDNEFLEAASQD-GFDIRLNFQPSNSPDLNVLDLGFFRAIQSLQEQEALGTIDELVHAVQTAFEKMQSQQLNNVFLTLQTCMREIIKVQGGNNYQIPHIG 404
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236) HSP 1 Score: 91.7 bits (226), Expect = 1.150e-16 Identity = 58/196 (29.59%), Postives = 105/196 (53.57%), Query Frame = 2 Query: 2096 VAKDRTSKNHKKEDVYEQYCT-LNHLRYRKWYMEELLPAIKTKMP*LLRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTG-VRKRQLSVKLENTPK---VDMEALFVADKM 2668 VA + SKN +K + + + R ++ + PAI +K P L K I IQQD+A H + N E A G++I+L+ QP+ SP+LN++ L FFR+++ + + +I+E+++ ++ Y+++D ++ W L V ++L+ KGGN++ H G R +L + +N VD ++ DK+ Sbjct: 75 VAAKKKSKNREKGTIETKAVEKITQKVIRDMIIQHVFPAIMSKWPAGLSKEIFIQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQIVDEAVQYLNDKL 269
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: UPI000B8A8D67 (uncharacterized protein LOC110790078 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8D67) HSP 1 Score: 91.7 bits (226), Expect = 2.230e-16 Identity = 52/164 (31.71%), Postives = 92/164 (56.10%), Query Frame = 2 Query: 2189 MEELLPAIKTKMP*LLRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTGVRKRQLSVKLENTPKVDMEALFVADKMVMDG 2680 ++E+LPAI++K P K I IQQD+A PH ++++ A K G++IRL+ QP+ SP++N++ L FFR+++ +E S++E++K +K Y +D +L W L ++L+ GGN++ H G R+ + L +V A + + +G Sbjct: 124 IDEMLPAIRSKWPLGACKEIWIQQDNARPHIHAEDTQFKEAATKD-GFNIRLINQPAQSPDMNVLDLGFFRTIQLIQYKEFPKSVDELIKEVKDAYNIFDPKSLNYTWLHLQYCMLEILQVNGGNNYKNPHKGKRRLESMGLLPVQIEVPTVTRIQAQQFLSEG 286
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499) HSP 1 Score: 90.9 bits (224), Expect = 3.860e-16 Identity = 59/170 (34.71%), Postives = 93/170 (54.71%), Query Frame = 2 Query: 2096 VAKDRTSKNHKKEDVYE---QYCTLNHLRYRKWYMEELLPAIKTKMP*LLRKHIVIQQDSATPHTGKDNSEIL*GAGKTAGWSIRLVMQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETALERAWQLLFVVYNQVLRYKGGNDFSVEHTGVRK 2596 VA R SKN K + Q T +R + +E+LLPAIK+K P K I IQQD+A PH ++ E L A + G++IRLV QP+ SP++NI+ L FFR+++ + S+ +++ ++ Y D A+ W L ++L+ +GGN++ H G +K Sbjct: 92 VAAIRNSKNRDKGTIETKALQSITKEVIRSK--MIEDLLPAIKSKWPSNACKDIWIQQDNARPHISPNDREFLEAATQD-GFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKK 258 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10469.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10469.1.1 >prot_C-tenellus_contig10469.1.1 ID=prot_C-tenellus_contig10469.1.1|Name=mRNA_C-tenellus_contig10469.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=114bp MQPSNSPNLNIMHLFFFRSLKCRVMEERFGSIEEMVKVIKKQYEEYDETAback to top mRNA from alignment at C-tenellus_contig10469:58..2953+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10469.1.1 ID=mRNA_C-tenellus_contig10469.1.1|Name=mRNA_C-tenellus_contig10469.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2896bp|location=Sequence derived from alignment at C-tenellus_contig10469:58..2953+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10469:58..2953+ >mRNA_C-tenellus_contig10469.1.1 ID=mRNA_C-tenellus_contig10469.1.1|Name=mRNA_C-tenellus_contig10469.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=342bp|location=Sequence derived from alignment at C-tenellus_contig10469:58..2953+ (Choristocarpus tenellus KU2346)back to top |