mRNA_C-tenellus_contig10465.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10465.1.1
Unique NamemRNA_C-tenellus_contig10465.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: D7G8N3_ECTSI (Calcium/ calmodulin-dependent protein kinase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N3_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.560e-55
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEFLVQ 330
            V RALQY+HS SIVHRDVKPENVM+ID+ + DGLYP+AKLLDFGLSKAID+D GGSVA+TFVGTPSYLAPEVE R  G GKPYGTPVDCWSLGAMLYVMLVARFPEF VQ
Sbjct:  167 VARALQYMHSKSIVHRDVKPENVMIIDRTAPDGLYPEAKLLDFGLSKAIDADTGGSVARTFVGTPSYLAPEVEERKGGKGKPYGTPVDCWSLGAMLYVMLVARFPEFQVQ 276          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A835YLX8_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.990e-47
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEFLV 327
            V RAL YLHS++++HRDVKPEN+MV D +S DGL+P+AKLLDFGLSK +  D  GS A+TFVGTP YLAPEVE+R +G G  YG  VDCWSLGA+LYVML ARFPEF V
Sbjct:  103 VARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGED-MGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTV 210          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: W7TL39_9STRA (Protein serine threonine kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL39_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.510e-44
Identity = 76/106 (71.70%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPE 318
            V  AL YLH L IVHRDVKPENV+++D +S +G YP AKLLDFGLSK I  D  GS A+TFVGTP YLAPEVE R  G G  YGT VDCWSLGA+LYVMLVARFPE
Sbjct:  179 VAHALAYLHRLHIVHRDVKPENVILLDALSPEGFYPFAKLLDFGLSKMIGQD-DGSAARTFVGTPCYLAPEVEARAYGRGGGYGTKVDCWSLGAVLYVMLVARFPE 283          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A4D9CU84_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU84_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.310e-42
Identity = 77/107 (71.96%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEF 321
            V  AL YLH L IVHRDVKPENV+++D +S +G YP AKLLDFGLSK I  D  GS A+TFVGTP YLAPEVE R  G G  YGT VDCWSLGA+LYVMLVARFPEF
Sbjct:  179 VAHALAYLHRLHIVHRDVKPENVILLDALSPEGFYPFAKLLDFGLSKMIGQD-DGSAARTFVGTPCYLAPEVEARAYGRGGGYGTKVDCWSLGAVLYVMLVARFPEF 284          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A7S3HNC2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNC2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.460e-35
Identity = 70/107 (65.42%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEF 321
            + RAL YLHSL+I+HRDVKPENV+V       G    AKLLDFGLSK   + G GS AKTFVGTP Y+APEVE   +G+G  Y  P DCWSLGA+LYVMLVARFPEF
Sbjct:  177 IARALYYLHSLNILHRDVKPENVLVSSIPDAQGNIV-AKLLDFGLSK---NAGNGSAAKTFVGTPCYVAPEVEYTSKGLGGTYSFPADCWSLGALLYVMLVARFPEF 279          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A7S2XZA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZA1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.220e-33
Identity = 69/118 (58.47%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    7 RALQYLHSLSIVHRDVKPENVMVI--DKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKP----------YGTPVDCWSLGAMLYVMLVARFPEFL 324
            +A+QYLH   I HRDVKPEN++++  DK+        AKLLDFGLSK + S+  GS+ KTFVGTP YLAPEVE R +  G P          YGT VDCWSLGA+LYVMLVARFPEF+
Sbjct:   97 QAIQYLHHKQIAHRDVKPENIILMQGDKV--------AKLLDFGLSKRMGSE-MGSLGKTFVGTPCYLAPEVEARQRLRGAPDGERCADLGRYGTAVDCWSLGAVLYVMLVARFPEFM 205          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A7S3XLU5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLU5_HETAK)

HSP 1 Score: 125 bits (313), Expect = 1.310e-32
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEF 321
            V +AL YLHS+ I+HRD+KPEN++++D    +   P AK+LDFGLSK ++S  G S+AKTFVGTP YLAPEVE   Q     YG  VD WSLGA+L+VMLVARFPEF
Sbjct:  149 VAQALVYLHSVGIIHRDIKPENILLLDNPDPNST-PVAKILDFGLSKNVES--GMSMAKTFVGTPCYLAPEVESSRQ-TKAAYGKEVDAWSLGAVLWVMLVARFPEF 251          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A7S1UJ38_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ38_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.030e-31
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   10 ALQYLHSLSIVHRDVKPENVMVI-----------DKISQDGLYPQAKLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPE 318
            AL YLH   I+HRD+KPEN+++            D  +    YP  KLLDFGLSK +    GGS A+TFVGTP Y+APEVE   QG  + YGT VD WS GA+LYVML+ARFPE
Sbjct:  135 ALSYLHRKHIIHRDIKPENILLCKADAEGRSTADDPTAASRDYPMVKLLDFGLSKTLSPSEGGSAARTFVGTPCYVAPEVEANAQGKKQEYGTKVDLWSAGALLYVMLIARFPE 248          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: A0A4D9D6B2_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6B2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.760e-31
Identity = 70/133 (52.63%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVI-------DKISQDGLYPQA-------------------KLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEF 321
            +  AL+YLHS +IVHRDVKPENV++           + DG    +                   KLLDFGLSK ID   GGSVA TFVGT +YLAPEVEL   G GK  G P DCWSLGA+L+VMLVA+FPEF
Sbjct:   74 LAEALRYLHSRNIVHRDVKPENVLLAYPNFGSDPSTAADGANAGSEGGCEGGGRKTKKSDGVIVKLLDFGLSKLIDPREGGSVANTFVGTRAYLAPEVELLAHGQGKAAGFPADCWSLGAVLHVMLVAKFPEF 206          
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Match: W7TDL2_9STRA (Serine threonine-protein kinase dclk3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDL2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 9.430e-31
Identity = 70/133 (52.63%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 VGRALQYLHSLSIVHRDVKPENVMVI-------DKISQDGLYPQA-------------------KLLDFGLSKAIDSDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVMLVARFPEF 321
            +  AL+YLHS +IVHRDVKPENV++           + DG    +                   KLLDFGLSK ID   GGSVA TFVGT +YLAPEVEL   G GK  G P DCWSLGA+L+VMLVA+FPEF
Sbjct:  215 LAEALRYLHSRNIVHRDVKPENVLLAYPNFGSDPSTAADGSNAGSEGGCEGGGRKTKKSEGVIVKLLDFGLSKLIDPREGGSVANTFVGTRAYLAPEVELLAHGQGKAAGFPADCWSLGAVLHVMLVAKFPEF 347          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10465.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N3_ECTSI2.560e-5584.55Calcium/ calmodulin-dependent protein kinase 1 n=1... [more]
A0A835YLX8_9STRA4.990e-4769.72Kinase-like domain-containing protein (Fragment) n... [more]
W7TL39_9STRA3.510e-4471.70Protein serine threonine kinase n=1 Tax=Nannochlor... [more]
A0A4D9CU84_9STRA1.310e-4271.96Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A7S3HNC2_9STRA4.460e-3565.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2XZA1_9STRA2.220e-3358.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XLU5_HETAK1.310e-3260.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UJ38_9STRA1.030e-3154.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D6B2_9STRA6.760e-3152.63Protein kinase domain-containing protein n=1 Tax=N... [more]
W7TDL2_9STRA9.430e-3152.63Serine threonine-protein kinase dclk3 n=1 Tax=Nann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10465contigC-tenellus_contig10465:4257..5340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8N3
PFAMsFHA,Pkinase
Model size330
Max annot lvl2759|Eukaryota
KEGG koko:K05869
KEGG Pathwayko04020,ko04024,ko04211,ko04371,ko04380,ko04720,ko04722,ko04725,ko04921,ko04925,ko05031,ko05034,map04020,map04024,map04211,map04371,map04380,map04720,map04722,map04725,map04921,map04925,map05031,map05034
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.2e-56
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
Cds size330
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.9426038-CDS-C-tenellus_contig10465:4256..44751680789132.9426038-CDS-C-tenellus_contig10465:4256..4475Choristocarpus tenellus KU2346CDSC-tenellus_contig10465 4257..4475 -
1680789132.9594522-CDS-C-tenellus_contig10465:5229..53401680789132.9594522-CDS-C-tenellus_contig10465:5229..5340Choristocarpus tenellus KU2346CDSC-tenellus_contig10465 5230..5340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10465.1.1prot_C-tenellus_contig10465.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10465 4257..5340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10465.1.1

>prot_C-tenellus_contig10465.1.1 ID=prot_C-tenellus_contig10465.1.1|Name=mRNA_C-tenellus_contig10465.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
VGRALQYLHSLSIVHRDVKPENVMVIDKISQDGLYPQAKLLDFGLSKAID
SDGGGSVAKTFVGTPSYLAPEVELRGQGIGKPYGTPVDCWSLGAMLYVML
VARFPEFLVQ
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mRNA from alignment at C-tenellus_contig10465:4257..5340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10465.1.1 ID=mRNA_C-tenellus_contig10465.1.1|Name=mRNA_C-tenellus_contig10465.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1084bp|location=Sequence derived from alignment at C-tenellus_contig10465:4257..5340- (Choristocarpus tenellus KU2346)
GTTGGCCGTGCTCTCCAGTATCTCCACTCTCTGAGCATAGTTCACAGGGA CGTCAAGCCTGAGAACGTTATGGTCATCGATAAAATATCTCAGGATGGAT TGTACCCTCAGGTGACTGACTGTTTCACCGTTGTGTACCTTTAATTGTAC CTGCAGTGTGTGTATGAATTGAAGGGTGCAGTATGTAACCTTTAGTTGTA CCTGCAACTTTGCATGCCAGTTGAAGGGTACAGTATGTACCTTTAATTGT ACCTGTAATTGTTTGTATCAATGGAAGGGTACAGCATATACCTTTAATTG AACCTGTGTGCCAATTGAAGGGTACAGTTTATACCTTCAATTTGTAACTG CTATTGTGTGGATCAATGGAAGGGTACAGCATATACCTTTAGTTGAACCC GTGTGCCAATTGAAGGGTACGGTTTATACCTTCAGTTGTAACTGCTATTG TGTGGATCGATGAAAGGGTGCAGTACATACCTTTAATTGTCCTCGTAGTT GCGTGGACCATTTGAGTGACTACATCCACACTTACAATGATGCATACATA CATGCCTACGTGTACGCCTCAATATATGTATTTTTCTTGGTTGTGTGGTT TTTTTTGTCTTCCCATATTTTTATATAGATTTATATATACATATACACAG ATGGTTAAAAATAGTATGCCACTCCATTGCCTACTTTGAAAGTACTGGTC ACATGCAATCTCATTTAACTATCATTTCATTACACACATGCTCACATGCA ATGTTATTTTAATAACGCTATTTTATTCTATTTATTTTATTTTATTTCAG TTTATTTTATTTCAGTTTATTTCACACACGCTCACGCACTACTTGTGCAC ACCACCCACCACCAGGCAAAGCTACTTGACTTTGGTCTCTCCAAGGCTAT CGACTCAGACGGAGGAGGCTCCGTGGCGAAGACATTTGTAGGCACCCCAT CGTATCTCGCCCCGGAGGTGGAGCTGAGGGGACAAGGGATTGGAAAGCCG TATGGAACGCCGGTGGACTGCTGGAGCCTAGGGGCGATGCTGTATGTGAT GCTTGTGGCGAGGTTTCCAGAGTTTTTGGTTCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10465:4257..5340-

>mRNA_C-tenellus_contig10465.1.1 ID=mRNA_C-tenellus_contig10465.1.1|Name=mRNA_C-tenellus_contig10465.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig10465:4257..5340- (Choristocarpus tenellus KU2346)
GTTGGCCGTGCTCTCCAGTATCTCCACTCTCTGAGCATAGTTCACAGGGA
CGTCAAGCCTGAGAACGTTATGGTCATCGATAAAATATCTCAGGATGGAT
TGTACCCTCAGGCAAAGCTACTTGACTTTGGTCTCTCCAAGGCTATCGAC
TCAGACGGAGGAGGCTCCGTGGCGAAGACATTTGTAGGCACCCCATCGTA
TCTCGCCCCGGAGGTGGAGCTGAGGGGACAAGGGATTGGAAAGCCGTATG
GAACGCCGGTGGACTGCTGGAGCCTAGGGGCGATGCTGTATGTGATGCTT
GTGGCGAGGTTTCCAGAGTTTTTGGTTCAG
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