mRNA_C-tenellus_contig10461.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10461.2.1
Unique NamemRNA_C-tenellus_contig10461.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10461.2.1 vs. uniprot
Match: A0A024UDY7_9STRA (Serine protease n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDY7_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.820e-5
Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 LLRELVKSVYVKNVDPRSGRRFYTNRRTGEVTYKKSICFGADDLETPR 144
            LLR++++ +Y K++DP+S   +Y N +T +V Y K +  G DD+E  R
Sbjct:  138 LLRDMIRDMYQKHMDPKSKEYYYLNTQTRQVFYTKPVFLGDDDIELER 185
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10461.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A024UDY7_9STRA8.820e-539.58Serine protease n=1 Tax=Aphanomyces invadans TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10461contigC-tenellus_contig10461:4498..4644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008867425.1
PFAMsRhodanese,Rhodanese_C,Trypsin_2,WW
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.45e-05
EggNOG OGsCOG1054@1|root,2S290@2759|Eukaryota
DescriptionFibronectin type 3 domain
Cds size147
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.6622488-CDS-C-tenellus_contig10461:4497..46441680789132.6622488-CDS-C-tenellus_contig10461:4497..4644Choristocarpus tenellus KU2346CDSC-tenellus_contig10461 4498..4644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10461.2.1prot_C-tenellus_contig10461.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10461 4498..4644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10461.2.1

>prot_C-tenellus_contig10461.2.1 ID=prot_C-tenellus_contig10461.2.1|Name=mRNA_C-tenellus_contig10461.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
LLRELVKSVYVKNVDPRSGRRFYTNRRTGEVTYKKSICFGADDLETPR*
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mRNA from alignment at C-tenellus_contig10461:4498..4644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10461.2.1 ID=mRNA_C-tenellus_contig10461.2.1|Name=mRNA_C-tenellus_contig10461.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10461:4498..4644+ (Choristocarpus tenellus KU2346)
CTCCTCAGGGAACTTGTGAAGAGCGTCTATGTGAAGAACGTTGACCCTCG
CTCTGGAAGGCGCTTCTATACAAACAGACGCACAGGAGAAGTCACCTATA
AAAAGTCAATTTGTTTCGGGGCCGACGATCTTGAGACTCCCCGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10461:4498..4644+

>mRNA_C-tenellus_contig10461.2.1 ID=mRNA_C-tenellus_contig10461.2.1|Name=mRNA_C-tenellus_contig10461.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10461:4498..4644+ (Choristocarpus tenellus KU2346)
CTCCTCAGGGAACTTGTGAAGAGCGTCTATGTGAAGAACGTTGACCCTCG
CTCTGGAAGGCGCTTCTATACAAACAGACGCACAGGAGAAGTCACCTATA
AAAAGTCAATTTGTTTCGGGGCCGACGATCTTGAGACTCCCCGGTGA
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