mRNA_C-tenellus_contig10460.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10460.1.1
Unique NamemRNA_C-tenellus_contig10460.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: D7FY32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY32_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 1.040e-73
Identity = 105/134 (78.36%), Postives = 119/134 (88.81%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQM+EHIHK++TFTPNDTRWVP SARFVVTGIHPRAKGALVVYE++KG LKLV ERET AGIKCCTFGASS E+RHLACGDYNG L +YDL+RND   WS   H  IINA+DG+GGPES++GAPE+V+
Sbjct:    1 MDTTDAPQMMEHIHKSITFTPNDTRWVPCSARFVVTGIHPRAKGALVVYELNKGKLKLVHERETDAGIKCCTFGASSLEDRHLACGDYNGKLAIYDLERNDVAAWSASAHKSIINAVDGLGGPESTYGAPELVT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A835ZGH6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.220e-59
Identity = 88/134 (65.67%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQ+IEHIHK++ +T   TRWVP SAR +V GI P+AKG + VYEMD+G LKLV E++ SAGIKC TFGASS E+RH+ACGDY G +++YDL+RND PV+SV+ H+ ++NAIDG GGPE  +GAPE+VS
Sbjct:    1 MDTTDAPQIIEHIHKSLDYTTYVTRWVPCSARLLVAGISPKAKGVMQVYEMDRGALKLVDEQQKSAGIKCSTFGASSLEDRHVACGDYEGKVSIYDLERNDKPVFSVQAHSSLVNAIDGTGGPELGYGAPELVS 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A7S2V3E6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3E6_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.510e-52
Identity = 83/134 (61.94%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTT APQ+IEH+HK++TFTP DT W+P SAR V  GI P++KG L V+EM++G L LVAE E   GIKC TFGAS  E+R +A GDY G LN++D++RND P++SV+ HT IINAIDGVGG +  +GAPEIV+
Sbjct:    1 MDTTSAPQLIEHVHKSLTFTPYDTLWIPCSARLVAMGITPKSKGILQVFEMNRGDLNLVAEYEKPNGIKCGTFGASPLEDRSIAVGDYAGVLNIWDVERNDLPIYSVQAHTTIINAIDGVGGVDVGYGAPEIVT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A812T2R2_SYMMI (Wdr92 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T2R2_SYMMI)

HSP 1 Score: 177 bits (448), Expect = 5.010e-52
Identity = 85/134 (63.43%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQ+IEHI+K +++TP D +W+P+S RFV  GIHP AKGAL VYE++KG L+LV +     GIKC TFGASS EERHLA GD+ G L +YDL+R DAPV+S + HT IINAIDG GG +   GAPEIV+
Sbjct:    1 MDTTDAPQIIEHINKHISYTPYDNKWIPFSKRFVSMGIHPNAKGALQVYELNKGDLELVLDSTKPQGIKCGTFGASSIEERHLATGDHAGKLAIYDLERVDAPVFSQQAHTSIINAIDGCGGMDIGNGAPEIVT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: H3G9P3_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3G9P3_PHYRM)

HSP 1 Score: 176 bits (447), Expect = 7.070e-52
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQ+IEH++++V FTPNDT+W+P SARFV  GIHP+A GAL VY +++G LK +A  E   GIKC TFGAS+ E+RHLA GDY G ++V+DL+R D PV+S + H  I+NAIDG GG     GAPEIV+
Sbjct:    1 MDTTDAPQLIEHVNQSVNFTPNDTKWIPGSARFVAMGIHPKATGALTVYGLNQGQLKTLAVHEKQHGIKCGTFGASALEDRHLATGDYGGVMSVWDLERADVPVYSAQAHKSIVNAIDGCGGQNIGSGAPEIVT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A024GTS1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTS1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.440e-50
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDT DAPQ+IEHI  +V FTPNDT+W+P SARFV  GI+P+A GA+ VYE+  G LK VAE E   GIKC +FGASS  ERHLA GDY G ++V+DL+  D P+++ + HT IINAIDG GG    +GAPEIV+
Sbjct:    1 MDTNDAPQLIEHIRHSVPFTPNDTKWIPVSARFVAMGIYPKATGAISVYELKHGDLKTVAELEKPNGIKCSSFGASSLHERHLATGDYAGIMSVWDLELPDVPIYAAQAHTSIINAIDGCGGQNIGYGAPEIVT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A662XAM1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAM1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 5.940e-50
Identity = 80/133 (60.15%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIV 399
            MDTTDAPQ+IEH+ ++V+FTPND +WVP SARFV  GI+P+A GAL VY + +G L+ +A  E   GIKC TFGAS+ EERHLA GDY G L+V+DL+R DAPV++ + H  I+NAIDG GG     GAPE+V
Sbjct:    1 MDTTDAPQLIEHVSQSVSFTPNDAKWVPCSARFVAMGIYPKATGALTVYGLSQGKLESLAVLEKPHGIKCGTFGASALEERHLATGDYGGVLSVWDLERPDAPVYAAQAHKSIVNAIDGCGGQNIGSGAPELV 133          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A067CTL7_SAPPC (WD repeat-containing protein 92 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTL7_SAPPC)

HSP 1 Score: 171 bits (433), Expect = 8.840e-50
Identity = 79/134 (58.96%), Postives = 100/134 (74.63%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQ+IEH++K + +TP D RW+P SARFV  GIHPRA GA+ +Y +++G LK +AE E   GIKC TFGASS EERHLACGD+ G ++V DL+R   PV+S + H  IIN I+G GG    +GAPEIV+
Sbjct:    1 MDTTDAPQVIEHVNKGLNYTPYDARWIPCSARFVSMGIHPRATGAITIYGLNQGELKTIAEIEKPHGIKCGTFGASSLEERHLACGDFAGVMSVLDLERPSVPVYSAQAHKSIINCIEGCGGLNIGYGAPEIVT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A3L6VI51_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VI51_9STRA)

HSP 1 Score: 162 bits (411), Expect = 5.700e-49
Identity = 75/134 (55.97%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQ+IEHI K+V +TP D RW+P SARFV  GIHPRA GA+ V+ + +G LK+V E E   G+KC TFGASS + RHLA GDY G +++YD ++ + PV+S + H  IIN IDG GG    +GAPE+ +
Sbjct:    1 MDTTDAPQVIEHITKSVNYTPYDARWIPCSARFVSMGIHPRATGAINVFALQQGELKVVHELEKQHGVKCGTFGASSLDARHLAVGDYAGIMSIYDFEKPEIPVYSAQAHKSIINCIDGCGGLNIGYGAPELAT 134          
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Match: A0A5D6XK33_9STRA (Uncharacterized protein n=2 Tax=Pythium TaxID=4797 RepID=A0A5D6XK33_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.980e-49
Identity = 75/134 (55.97%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    1 MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYEMDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRNDAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS 402
            MDTTDAPQ+IEH+ ++++FTPNDT+W+P SARFV  GI+P+A GAL ++ +++G L+ VAE E   GIKC TFGA+S E+RHLA GDY G ++V+DL++ + PV++ + H  I+NAIDG GG     GAPEIV+
Sbjct:    1 MDTTDAPQIIEHVSRSLSFTPNDTKWIPCSARFVAMGIYPKATGALSIFALNQGELRTVAEIEKPQGIKCGTFGAASLEDRHLATGDYGGVMSVWDLEKTEVPVYAAQAHKAIVNAIDGCGGQNIGHGAPEIVT 134          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10460.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY32_ECTSI1.040e-7378.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZGH6_9STRA6.220e-5965.67WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2V3E6_9STRA2.510e-5261.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812T2R2_SYMMI5.010e-5263.43Wdr92 protein n=1 Tax=Symbiodinium microadriaticum... [more]
H3G9P3_PHYRM7.070e-5260.45Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
A0A024GTS1_9STRA4.440e-5060.45Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A662XAM1_9STRA5.940e-5060.15Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A067CTL7_SAPPC8.840e-5058.96WD repeat-containing protein 92 n=4 Tax=Saprolegni... [more]
A0A3L6VI51_9STRA5.700e-4955.97Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A5D6XK33_9STRA6.980e-4955.97Uncharacterized protein n=2 Tax=Pythium TaxID=4797... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10460contigC-tenellus_contig10460:329..1468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FY32
Preferred nameWDR92
PFAMsWD40
Model size402
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005955,GO:0006355,GO:0006357,GO:0007154,GO:0007165,GO:0008150,GO:0008287,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0019722,GO:0019904,GO:0019932,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032182,GO:0032991,GO:0033173,GO:0035556,GO:0043130,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048016,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097720,GO:1902494,GO:1902680,GO:1903293,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
Evalue1.71e-74
EggNOG OGs28J7X@1|root,2QRKB@2759|Eukaryota
Descriptionubiquitin binding
Cds size402
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.4606795-CDS-C-tenellus_contig10460:328..4811680789132.4606795-CDS-C-tenellus_contig10460:328..481Choristocarpus tenellus KU2346CDSC-tenellus_contig10460 329..481 -
1680789132.4810762-CDS-C-tenellus_contig10460:744..8521680789132.4810762-CDS-C-tenellus_contig10460:744..852Choristocarpus tenellus KU2346CDSC-tenellus_contig10460 745..852 -
1680789132.4904656-CDS-C-tenellus_contig10460:1327..14681680789132.4904656-CDS-C-tenellus_contig10460:1327..1468Choristocarpus tenellus KU2346CDSC-tenellus_contig10460 1328..1468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10460.1.1prot_C-tenellus_contig10460.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10460 329..1468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10460.1.1

>prot_C-tenellus_contig10460.1.1 ID=prot_C-tenellus_contig10460.1.1|Name=mRNA_C-tenellus_contig10460.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=134bp
MDTTDAPQMIEHIHKAVTFTPNDTRWVPWSARFVVTGIHPRAKGALVVYE
MDKGHLKLVAERETSAGIKCCTFGASSFEERHLACGDYNGNLNVYDLDRN
DAPVWSVKGHTQIINAIDGVGGPESSFGAPEIVS
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mRNA from alignment at C-tenellus_contig10460:329..1468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10460.1.1 ID=mRNA_C-tenellus_contig10460.1.1|Name=mRNA_C-tenellus_contig10460.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1140bp|location=Sequence derived from alignment at C-tenellus_contig10460:329..1468- (Choristocarpus tenellus KU2346)
ATGGATACAACCGATGCTCCCCAGATGATTGAGCACATACACAAGGCGGT GACCTTCACGCCGAACGACACGCGATGGGTCCCGTGGAGTGCACGTTTCG TCGTTACAGGCATTCACCCAAGGGCCAAGGGTGCCTTGGTGGTGAGTTGT ATGGAACCATGATGATGACCTATGCGTGTCTGCATCATGGTAGCCTTCAT CTATAACATTTGCTCTAGATATAGACCTGCAAACGTGGTTGACACTTTTG AATATGACAACGGTACTTGCTCCATCGCAGTATTTTACGCAAAACGGAGG TGTGACCTCACTTGAAGTGGGGATGGTTCACAAGTGTGCTGACTCCTACC CACATGAAATGTCTCATATTGTCAAGTGTTAGCCGTAGGTAAAGAAAGTT GTTGAATCGATTACTGTAATGATAGAGAAGGAAGGTCTCTGCCATCGTGT TTGAGATGTAAATGTTAGCCTCGAGGATACGCGAAAACTTCCATTGTCTT GCTGCTTCACAGCATGCTGCACTACCCCCACCGCCCAACCCAGAAATTGC ATCATGCACAAGGAAAACATGTCACTAGCTGCACTTGTGCCGAACCATAT ACTCGTGCACCACCAGGTTTATGAAATGGACAAGGGCCACCTCAAACTAG TTGCGGAGAGGGAAACTTCAGCGGGGATAAAGTGTTGTACGTTCGGAGCA TCTTCTTTCGAAGAGAGACATCTGGTGCGCCTTCGATGTGTCCAATATTT CCTCAGGAATATGTACCCAACCACCGAAAGTCAAATTCCCACAGACACGC GCCATCCCCTTCTCTGCAGTGTTGCAATTCATGTTGAGTGGCATGATCGA CACACTTGACACACATGTCCCTCGGAAGTGTTCAGAGTCAATTCCCACGG AGCCTCGATGTATTCGGGGGAAGGTAACCATTCACTGCTTTACACCGCAT ATCAATGGATGATTACCAAATTATTCTGCCCTGTCAGGCTTGTGGAGACT ATAACGGGAACTTGAATGTCTACGACCTGGATAGGAACGATGCGCCGGTG TGGTCAGTAAAGGGGCACACACAAATCATCAACGCCATCGATGGTGTGGG AGGGCCGGAATCCTCCTTTGGGGCACCTGAGATTGTGAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10460:329..1468-

>mRNA_C-tenellus_contig10460.1.1 ID=mRNA_C-tenellus_contig10460.1.1|Name=mRNA_C-tenellus_contig10460.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=402bp|location=Sequence derived from alignment at C-tenellus_contig10460:329..1468- (Choristocarpus tenellus KU2346)
ATGGATACAACCGATGCTCCCCAGATGATTGAGCACATACACAAGGCGGT
GACCTTCACGCCGAACGACACGCGATGGGTCCCGTGGAGTGCACGTTTCG
TCGTTACAGGCATTCACCCAAGGGCCAAGGGTGCCTTGGTGGTTTATGAA
ATGGACAAGGGCCACCTCAAACTAGTTGCGGAGAGGGAAACTTCAGCGGG
GATAAAGTGTTGTACGTTCGGAGCATCTTCTTTCGAAGAGAGACATCTGG
CTTGTGGAGACTATAACGGGAACTTGAATGTCTACGACCTGGATAGGAAC
GATGCGCCGGTGTGGTCAGTAAAGGGGCACACACAAATCATCAACGCCAT
CGATGGTGTGGGAGGGCCGGAATCCTCCTTTGGGGCACCTGAGATTGTGA
GT
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