mRNA_C-tenellus_contig10459.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10459.1.1
Unique NamemRNA_C-tenellus_contig10459.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A6J2VHE7_CHACN (Dynein light chain n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VHE7_CHACN)

HSP 1 Score: 166 bits (421), Expect = 1.170e-45
Identity = 77/85 (90.59%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:  856 QSPEIMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            + P++MT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   57 EQPDVMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 141
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BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A556UYL8_BAGYA (Dynein light chain n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A556UYL8_BAGYA)

HSP 1 Score: 166 bits (420), Expect = 1.490e-45
Identity = 80/97 (82.47%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:  823 ASRGSTPTLS-TQSPEIMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            + +GS  + S + +P+IMT+RKAVIKNADM+EDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   42 SQQGSPSSWSLSNAPDIMTDRKAVIKNADMTEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 138
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BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A2C9K100_BIOGL (Dynein light chain n=4 Tax=Euthyneura TaxID=216307 RepID=A0A2C9K100_BIOGL)

HSP 1 Score: 163 bits (412), Expect = 3.540e-45
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:  871 MTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            M+ERKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: C1FDC9_MICCC (Dynein light chain n=2 Tax=Eukaryota TaxID=2759 RepID=C1FDC9_MICCC)

HSP 1 Score: 163 bits (412), Expect = 3.540e-45
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:  871 MTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            M+ERKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A8B9KB64_ASTMX (Dynein light chain n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KB64_ASTMX)

HSP 1 Score: 164 bits (414), Expect = 3.810e-45
Identity = 77/82 (93.90%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  865 EIMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            +IMT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   23 DIMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 104
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A7J6BTD7_9TELE (Dynein light chain n=1 Tax=Onychostoma macrolepis TaxID=369639 RepID=A0A7J6BTD7_9TELE)

HSP 1 Score: 163 bits (413), Expect = 3.900e-45
Identity = 77/81 (95.06%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  868 IMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            IMT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   14 IMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 94
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A671LJQ8_9TELE (Dynein light chain n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671LJQ8_9TELE)

HSP 1 Score: 163 bits (413), Expect = 4.850e-45
Identity = 77/81 (95.06%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  868 IMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            IMT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   21 IMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 101
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: H2S8S8_TAKRU (Dynein light chain n=7 Tax=Clupeocephala TaxID=186625 RepID=H2S8S8_TAKRU)

HSP 1 Score: 162 bits (411), Expect = 4.950e-45
Identity = 77/80 (96.25%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:  871 MTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            MT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A8C1HDF0_CYPCA (Dynein light chain n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HDF0_CYPCA)

HSP 1 Score: 164 bits (415), Expect = 5.280e-45
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:  847 LSTQSPEIMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            + T    IMT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   38 VKTSEEAIMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 125
[Close]
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Match: A0A6J2XTN8_SITOR (Dynein light chain n=2 Tax=Dryophthorinae TaxID=39812 RepID=A0A6J2XTN8_SITOR)

HSP 1 Score: 163 bits (413), Expect = 6.230e-45
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:  850 STQSPEIMTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 1110
            STQ    MT+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQ
Sbjct:   23 STQKASKMTDRKAVIKNADMSEDMQQDAVDCATQAIEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J2VHE7_CHACN1.170e-4590.59Dynein light chain n=1 Tax=Chanos chanos TaxID=291... [more]
A0A556UYL8_BAGYA1.490e-4582.47Dynein light chain n=2 Tax=Siluroidei TaxID=148979... [more]
A0A2C9K100_BIOGL3.540e-4597.50Dynein light chain n=4 Tax=Euthyneura TaxID=216307... [more]
C1FDC9_MICCC3.540e-4597.50Dynein light chain n=2 Tax=Eukaryota TaxID=2759 Re... [more]
A0A8B9KB64_ASTMX3.810e-4593.90Dynein light chain n=1 Tax=Astyanax mexicanus TaxI... [more]
A0A7J6BTD7_9TELE3.900e-4595.06Dynein light chain n=1 Tax=Onychostoma macrolepis ... [more]
A0A671LJQ8_9TELE4.850e-4595.06Dynein light chain n=1 Tax=Sinocyclocheilus anshui... [more]
H2S8S8_TAKRU4.950e-4596.25Dynein light chain n=7 Tax=Clupeocephala TaxID=186... [more]
A0A8C1HDF0_CYPCA5.280e-4588.64Dynein light chain n=1 Tax=Cyprinus carpio TaxID=7... [more]
A0A6J2XTN8_SITOR6.230e-4589.66Dynein light chain n=2 Tax=Dryophthorinae TaxID=39... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10459contigC-tenellus_contig10459:235..2569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296587.XP_002507507.1
Preferred nameODA-LC8
PFAMsDynein_light
Model size1600
Max annot lvl3041|Chlorophyta
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005875,GO:0005929,GO:0005930,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
Exons2
Evalue3.43e-51
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota,37VK3@33090|Viridiplantae,34M71@3041|Chlorophyta
Descriptionouter dynein arm light chain 8
Cds size351
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.1979768-UTR-C-tenellus_contig10459:234..6131680789132.1979768-UTR-C-tenellus_contig10459:234..613Choristocarpus tenellus KU2346UTRC-tenellus_contig10459 235..613 -
1680789132.234976-UTR-C-tenellus_contig10459:1699..25691680789132.234976-UTR-C-tenellus_contig10459:1699..2569Choristocarpus tenellus KU2346UTRC-tenellus_contig10459 1700..2569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.2143557-CDS-C-tenellus_contig10459:613..8561680789132.2143557-CDS-C-tenellus_contig10459:613..856Choristocarpus tenellus KU2346CDSC-tenellus_contig10459 614..856 -
1680789132.2248075-CDS-C-tenellus_contig10459:1591..16991680789132.2248075-CDS-C-tenellus_contig10459:1591..1699Choristocarpus tenellus KU2346CDSC-tenellus_contig10459 1592..1699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10459.1.1prot_C-tenellus_contig10459.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10459 614..1699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10459.1.1

>prot_C-tenellus_contig10459.1.1 ID=prot_C-tenellus_contig10459.1.1|Name=mRNA_C-tenellus_contig10459.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=117bp
MTERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKY
NPTWHCIVGRNFGSYVTHETKHFIYFYLGQACFRRCSFCNASCLLLLLHL
LCLQHDKAFVVLKVLH*
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mRNA from alignment at C-tenellus_contig10459:235..2569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10459.1.1 ID=mRNA_C-tenellus_contig10459.1.1|Name=mRNA_C-tenellus_contig10459.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2335bp|location=Sequence derived from alignment at C-tenellus_contig10459:235..2569- (Choristocarpus tenellus KU2346)
TTTCACTATCCCTGCCCCTGGTTCTGACGGTTGAGAGCAGGTGAGATATA
TATATTTATTTAATTGCATTTTCAGACTCTGTGCCTTGACCCTCCTCTTA
GAGTTGTTGCAATTGTAAGTCAAACAACCAGCTAGGAGCAAGAAGTGAGG
TGGTCAAACTTGTTCCTATTCTTGTTGGTTGCCTTGACATTTTGGAGGGG
TAACCGACATCATCCTTGGGAGAAGGAGCATAGATCAATCCCTTTACTGC
CAGACCATAAGAGCGCTCCACATATCTGCAATCATAATCAGCTGCTTTAT
CTTTTGCACTGCATGGCTCGGTGTACCCTGGCTCTAAAAATCCGGTAGGC
TCCCCTCCCCTGCTTGATGACTCTGAGGATGGGGAAACCTTTTTTTTCGA
TTCCCGTCCTTATCCAAAGGTATACGGGAGGCCTTCGCCTCGGGAATAAC
CTCCATCTTTCATTCTCCAGACTCATTATATTGAACCCTAAGGTCATTGA
TATCATTTTCCATCTGTTCATGGAATGAGAACCTAGTTTTGTATTGAGGG
TCAGCCTGAGTCGGGTTCTATTGACCCCAATTTGCCTCGCCCTAGCCCTT
CGACCTTAGGCCTCACTTCAAAAGAACTGCACGGTCCCATGACTGAACCG
TGACGTCGGTGCTTCTGTTTTTTCTTCTCTCACGTGGCAGTCTCTTGAGT
GTTTAAGCCAACGTGCACAGGACCTGTGCCCACGATAGCTAAAGTGGTCG
TTGGAATACTGTAAGTAGTAGTCAAGGTTGAAGGGAGAAGAAGGGGAAGT
GGAGCAGGGCCTGTCCTAAGAAGCTAGCAGAGGCAGTACACCAACCCTTT
CGACACAATCTCCTGAAATAATGACGGAACGCAAGGCAGTAATCAAGAAT
GCTGATATGTCAGAGGACATGCAGCAAGACGCGGTTGACTGCGCCTCTCA
GGCACTTGAGAAGTACAACATCGAGAAGGTGACGCGTTTTGACGTGTTTT
GGTGTGGGTGGGTCTGCGGAACCGAGTAACTCTGAAATTGATACTAAGAT
AATGATCCAAAGCTTGCTTCTGATATTGGCCCACCTCATACGGTAGAGGG
GATATTTCATTTGGGGTGTTCCATGCACATCAATGCTATCTAGGCCAAGG
AATTATTCTGTACCTTCAAGCAACGCAGCAAATAGAGTCCTGGAAAATTT
CCCCTCTAACCGGACTGAACTGTGCAAGGCACTGTTTTGTGAGGAGAGGG
AAGGAGGTTTGGCGCATCAATCCCAACTCCTACCCCCCTCCAATGGGGTG
CCCTTACCACCCACAGGTTTTATTCCCAGCAATGGCGTTTTGTGCAGCTC
ACCCCTTCCCATATACTTAATGTGCGCGGTGTGAAGATCGCTCTGAAGAT
CAATTCACAACTAGAGAATTCTATTTGAAAATTCTGTGAAATTTCCGACC
GCATTTTCTTTTGTATAGATGTCGACTGACGTAACTACACCTGCCCATTT
CGAATCGATCCCTCTTCCCCTTATCAAACACCCTACACCTTGCACTTTAT
TGTGTTATTGATGCAACCACGTTAGGTTTAGGGGTTAGGGTTAGGGTTAG
GGTTACACACATTGATCATAGGGCAATGTATTACTCCCTATGTTGAATCC
CAAATCAGTACCTTGTAAGAGTCAGTACTTGACTTGGATCAGCACTCTTT
CTCCCCCCTACAGGATATTGCAGCTTTTATCAAGAAGGAGTTTGACAAGA
AGTATAATCCTACCTGGCACTGCATTGTGGGGCGCAACTTTGGGTCCTAT
GTTACCCACGAGACCAAACACTTCATCTATTTCTACCTTGGACAGGCATG
CTTCCGTAGATGTTCTTTTTGCAATGCTTCTTGTTTGCTCCTTCTTTTGC
ACCTCCTGTGTCTGCAACACGATAAAGCTTTTGTGGTATTAAAAGTGCTA
CATTAGCATGTGTTCTTTCTTTGTATTAAAAGTGTGGTTGATGGGGGTGG
GGGAAGATCAGGGTGTAATCTGGAGTGAAAGGTAATGATAAATCTGTCCC
ATTTGCTCCTTCCAAATAACAGAATTGACATGTCCTTGAGAGCCTTACAG
CCGTGTCAATTTGATTTTTGGATGTGATAAAGGGCGTTTTTATTGTTACA
TTTTGTATTGTTGTGCATCTGTGCTATCTCTGTACTGCTCGAGGAATGGG
ATCTGTTTTTTAATTGTGTCAACAAAAGGTATATCTTGTATCATAGAAAT
ACTAGGAAAGGGTTAGGAGGTATGGCAATCTCATTGTGTCTGACAGGGAA
CTAACTCCTGGAATATTCTTGTACCATACCCGCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10459:235..2569-

>mRNA_C-tenellus_contig10459.1.1 ID=mRNA_C-tenellus_contig10459.1.1|Name=mRNA_C-tenellus_contig10459.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=351bp|location=Sequence derived from alignment at C-tenellus_contig10459:235..2569- (Choristocarpus tenellus KU2346)
ATGACGGAACGCAAGGCAGTAATCAAGAATGCTGATATGTCAGAGGACAT
GCAGCAAGACGCGGTTGACTGCGCCTCTCAGGCACTTGAGAAGTACAACA
TCGAGAAGGATATTGCAGCTTTTATCAAGAAGGAGTTTGACAAGAAGTAT
AATCCTACCTGGCACTGCATTGTGGGGCGCAACTTTGGGTCCTATGTTAC
CCACGAGACCAAACACTTCATCTATTTCTACCTTGGACAGGCATGCTTCC
GTAGATGTTCTTTTTGCAATGCTTCTTGTTTGCTCCTTCTTTTGCACCTC
CTGTGTCTGCAACACGATAAAGCTTTTGTGGTATTAAAAGTGCTACATTA
G
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