mRNA_C-tenellus_contig10458.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10458.1.1
Unique NamemRNA_C-tenellus_contig10458.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: A0A7S2DPH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPH7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.410e-36
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:    1 QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAARPTPEEILDAIIGIYCLERVGIHHEIKSDVKARLK----MYTARDYLGWDPADGPPPE 288
            QCFYDVA  TGEPI+ARAL Y EQLAHRWK++ M  GWK    PTP+E++D +IG+YC+ERVGIHHE+KS+V+A +     +Y+  DYLGW+P  GPPP+
Sbjct:  216 QCFYDVATVTGEPIRARALKYTEQLAHRWKHSVMVQGWKCGEVPTPQEVIDVLIGMYCMERVGIHHEMKSEVEAFMAQKPPVYSIVDYLGWNPKLGPPPD 315          
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: A0A835ZEN8_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.270e-34
Identity = 63/118 (53.39%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAARP----------------------TPEEILDAIIGIYCLERVGIHHEIKSDVKARLKMYTARDYLGWDPADGPPPE 288
            QCFYDVA+ TGEP++ARALMYVEQLA RWK    H GW+Q+ R                       T  EI+DAI+ +YCLERVGIH ++K +V+A L  YTA+DYLGW+P  GPPPE
Sbjct:  225 QCFYDVASATGEPVRARALMYVEQLAQRWKTTVRHAGWRQSPRSASHSVAAAREPCCTTRVEGDTATAPEIIDAIVAMYCLERVGIHDDVKVEVEAALDAYTAKDYLGWNPLAGPPPE 342          
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: A0A7S3ZP81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZP81_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.320e-28
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAARPTPEEILDAIIGIYCLERVGIHH-EIKSDV-----------KARLKMYTARDYLGWDPA-DGPPPEPVSQDICKKGV 321
            QCFYDVA  T +P++A ALM+VEQLAH+W++  +  GW+ + RPTP++IL+ I+G+YCLERVG+   ++K DV              LK Y+ +DY GWDP  D   PE V++ +  + V
Sbjct:  200 QCFYDVARATEDPVRANALMFVEQLAHKWRHRILSRGWRSSGRPTPQQILETIVGLYCLERVGVSAPKLKEDVVHAVTLTGPDADDSLKPYSCKDYFGWDPVHDATVPEGVAEVLSGEAV 319          
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: F0XZU3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZU3_AURAN)

HSP 1 Score: 113 bits (282), Expect = 7.230e-27
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAA--RPTPEEILDAIIGIYCLERVGIH-HEIKSDVKAR---------------LKMYTARDYLGWDPA---DGPP---PEPVSQDICKK 315
            QCF+DVA  TG+P+++RALMYVEQLA RW++  +  GW+ +A  RP+P+ IL+ ++GIYC+ERVG+  H++K DVK                 L  Y   DYLGWDPA    GPP   PE +S +   K
Sbjct:  213 QCFFDVATVTGDPVRSRALMYVEQLAQRWRHGVVARGWRHSATLRPSPQNILETVVGIYCMERVGVSSHKLKEDVKRAVDCAGEYAAPDGEPPLLPYGPVDYLGWDPARCPGGPPDDVPEVLSGETASK 341          
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: D0P1G3_PHYIT (TFIIS N-terminal domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P1G3_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-9
Identity = 32/99 (32.32%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAARPTPEEILDAIIGIYCLERVGIHH----EIKSDVKARLKMYTARDYLGWDPADGPPP 285
            Q  YD+       I   A +Y   +   W     HV W   + PTP ++++A+  +Y +ERVGI H    E+         +Y A++ LGW+PA+ PPP
Sbjct:  123 QSLYDLQAVEEGDILRLATLYARLIGALWLKEDRHVNWAVGSIPTPTQLVNAMSAVYLVERVGISHARRVELLDFCDRSPVVYGAKELLGWNPAESPPP 221          
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: A0A835YTP3_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.420e-9
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 FYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVG-WKQAARPTPEEILDAIIGIYCLERVGIHHEIKSDVKARLKMYT---ARDYLGWDPADG 276
            F+D++  T EP++  AL  +E LA RWK  +  +   ++ +R +  +++DA++GI+ LER+GI H +K++ +  ++        DYLG    DG
Sbjct:  177 FHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDG 270          
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Match: A0A225VDT7_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VDT7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.620e-6
Identity = 26/98 (26.53%), Postives = 46/98 (46.94%), Query Frame = 1
Query:    1 QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAARPTPEEILDAIIGIYCLERVGIHHEIKSDV----KARLKMYTARDYLGWDPADGPP 282
            Q  YD+       +   A +Y   +   W        W   + PTP +++DAI+ ++ +ER+GI H+ + ++         +Y  ++ LGWD   GPP
Sbjct:  123 QSLYDLQAVENGEVLRLATLYARLIGALWLKQNRDTDWVVGSVPTPTQLVDAIMAVHLVERLGISHDRRVELLDFCDRSPPVYGPKELLGWDLTAGPP 220          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10458.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2DPH7_9STRA6.410e-3661.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835ZEN8_9STRA3.270e-3453.39TFIIS N-terminal domain-containing protein n=1 Tax... [more]
A0A7S3ZP81_9STRA5.320e-2845.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XZU3_AURAN7.230e-2745.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D0P1G3_PHYIT1.260e-932.32TFIIS N-terminal domain-containing protein n=2 Tax... [more]
A0A835YTP3_9STRA2.420e-932.98PHD-type domain-containing protein n=1 Tax=Tribone... [more]
A0A225VDT7_9STRA5.620e-626.53TFIIS N-terminal domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10458contigC-tenellus_contig10458:4401..5444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009033911.1
PFAMsABC1,Aa_trans,Ras,SH2
Model size324
Max annot lvl2759|Eukaryota
KEGG koko:K08869,ko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.19e-27
EggNOG OGsCOG0661@1|root,COG0814@1|root,KOG1235@2759|Eukaryota,KOG1304@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
Cds size324
COG categoryE
BRITEko00000,ko00001,ko01001,ko02000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.1482801-CDS-C-tenellus_contig10458:4400..45801680789132.1482801-CDS-C-tenellus_contig10458:4400..4580Choristocarpus tenellus KU2346CDSC-tenellus_contig10458 4401..4580 -
1680789132.1625586-CDS-C-tenellus_contig10458:5300..54441680789132.1625586-CDS-C-tenellus_contig10458:5300..5444Choristocarpus tenellus KU2346CDSC-tenellus_contig10458 5301..5444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10458.1.1prot_C-tenellus_contig10458.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10458 4401..5444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10458.1.1

>prot_C-tenellus_contig10458.1.1 ID=prot_C-tenellus_contig10458.1.1|Name=mRNA_C-tenellus_contig10458.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
QCFYDVANTTGEPIKARALMYVEQLAHRWKYAFMHVGWKQAARPTPEEIL
DAIIGIYCLERVGIHHEIKSDVKARLKMYTARDYLGWDPADGPPPEPVSQ
DICKKGV*
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mRNA from alignment at C-tenellus_contig10458:4401..5444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10458.1.1 ID=mRNA_C-tenellus_contig10458.1.1|Name=mRNA_C-tenellus_contig10458.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1044bp|location=Sequence derived from alignment at C-tenellus_contig10458:4401..5444- (Choristocarpus tenellus KU2346)
CAGTGCTTCTATGATGTGGCCAACACCACAGGGGAACCAATCAAGGCAAG GGCACTCATGTATGTTGAGCAGTTGGCCCACAGGTGGAAATATGCTTTCA TGCACGTTGGATGGAAGCAGGCTGCAAGGCCTACTCCTGAGGAGGTGAGA AGGAGTTCAAGGTGGGGAGATGGGGAGGGGTTTTCCAGTTTGAGAACAAG TCATAGATCATTGGAGGAAGGAAAGTGAAAGACATGTAAGTGTGGCAGGG GGGGGGGGGGGTGGGGGGGGGTTAATGTGAGGTCAGGGAGTTGGTAGAGG GTGAGGAGGGGGAATGCACACGACATGCTGTACAGTACGGTCAGTACACA GAAGTGTACGCTACTCTGAAAAAAGTGCACCAAGAACTACGTGTGAAATG AGAACAGCACATCTAGTACCTTCAAGTTTGAGAGTATCCTTTGAAGAAAA ATAGCACGAAAGGTAGGGCAGAGAATGGCGAGGAGGTCATAACGTTTGGG TGCCATGAATGAGGAATATCATTTATGTAGACAGTTTTGGTGCCTCTTAG TGTGCTGCACTGAATGGGCAGATGAGGACAGGAGAGAGACTGGGAACCAG GTGGGGTGGGAGTGTGGACGTTCTTGTTTCTCGCTCTTGTGGTGCTGTCT TGGAGCTCTTCATGTGAAAGTGGAGGAAGGTGGTGGGAAGGATAGGGGAA GAGGGAGGGGAGTCAGGCATCCCTCACCTTCTGTAGTTTTGTGCTGCTTT GCAGGCCACGGAACAATTTTTAATGTTTGTTTTTTTCCTATTGATTCTAA GTGCCTTGATATGCCTTGTCCTTGCCCAACTAACGCACACACACACTTCT CAAACTCATGATAGATATTGGATGCAATCATTGGCATTTATTGCCTGGAG AGGGTTGGCATTCACCATGAGATCAAGAGCGACGTCAAGGCCAGGCTGAA GATGTACACAGCCAGGGATTATCTAGGATGGGACCCAGCCGATGGACCAC CTCCAGAGCCTGTGAGTCAAGACATATGCAAGAAGGGGGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10458:4401..5444-

>mRNA_C-tenellus_contig10458.1.1 ID=mRNA_C-tenellus_contig10458.1.1|Name=mRNA_C-tenellus_contig10458.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig10458:4401..5444- (Choristocarpus tenellus KU2346)
CAGTGCTTCTATGATGTGGCCAACACCACAGGGGAACCAATCAAGGCAAG
GGCACTCATGTATGTTGAGCAGTTGGCCCACAGGTGGAAATATGCTTTCA
TGCACGTTGGATGGAAGCAGGCTGCAAGGCCTACTCCTGAGGAGATATTG
GATGCAATCATTGGCATTTATTGCCTGGAGAGGGTTGGCATTCACCATGA
GATCAAGAGCGACGTCAAGGCCAGGCTGAAGATGTACACAGCCAGGGATT
ATCTAGGATGGGACCCAGCCGATGGACCACCTCCAGAGCCTGTGAGTCAA
GACATATGCAAGAAGGGGGTGTGA
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