mRNA_C-tenellus_contig10454.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10454.1.1
Unique NamemRNA_C-tenellus_contig10454.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10454contigC-tenellus_contig10454:1079..2166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog215358.XP_010736588.1
Preferred nameUHRF2
PFAMsPHD,SAD_SRA,TTD,ubiquitin,zf-C3HC4
Model size616
Max annot lvl33208|Metazoa
KEGG koko:K10638,ko:K15713
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0006139,GO:0006259,GO:0006355,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009889,GO:0009987,GO:0010216,GO:0010468,GO:0010556,GO:0010564,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0030154,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032446,GO:0032502,GO:0033043,GO:0033044,GO:0034641,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045787,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051128,GO:0051171,GO:0051252,GO:0051726,GO:0051865,GO:0060255,GO:0060968,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0080090,GO:0090068,GO:0090304,GO:0090308,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1903506,GO:2000112,GO:2001141
Exons3
Evalue8.84e-06
EggNOG OGsCOG3440@1|root,2QRDQ@2759|Eukaryota,397R4@33154|Opisthokonta,3BE3C@33208|Metazoa,3CURC@33213|Bilateria,480RA@7711|Chordata,496HZ@7742|Vertebrata,49U0B@7898|Actinopterygii
EC2.3.2.27
DescriptionUbiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
Cds size450
COG categoryK
BRITEko00000,ko01000,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.0241342-CDS-C-tenellus_contig10454:1078..11741680789132.0241342-CDS-C-tenellus_contig10454:1078..1174Choristocarpus tenellus KU2346CDSC-tenellus_contig10454 1079..1174 -
1680789132.0377092-CDS-C-tenellus_contig10454:1396..15731680789132.0377092-CDS-C-tenellus_contig10454:1396..1573Choristocarpus tenellus KU2346CDSC-tenellus_contig10454 1397..1573 -
1680789132.0495782-CDS-C-tenellus_contig10454:1824..20011680789132.0495782-CDS-C-tenellus_contig10454:1824..2001Choristocarpus tenellus KU2346CDSC-tenellus_contig10454 1825..2001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.0658638-UTR-C-tenellus_contig10454:2001..21661680789132.0658638-UTR-C-tenellus_contig10454:2001..2166Choristocarpus tenellus KU2346UTRC-tenellus_contig10454 2002..2166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10454.1.1prot_C-tenellus_contig10454.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10454 1079..2001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10454.1.1

>prot_C-tenellus_contig10454.1.1 ID=prot_C-tenellus_contig10454.1.1|Name=mRNA_C-tenellus_contig10454.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=150bp
MPSIFVFAQHEVPDKRRVEVNLSNRLMPVTALQDEIENIFGVAPSDQRLA
FKGKLMRAENEEGKKTTLFDYGINRNDVVQMFPPKSVALKKSADAAAAAA
ARASAAPGPASQSTSHQEVNGDVKLSEEAAPDEKTRKEEEKEPIGAAFLD
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mRNA from alignment at C-tenellus_contig10454:1079..2166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10454.1.1 ID=mRNA_C-tenellus_contig10454.1.1|Name=mRNA_C-tenellus_contig10454.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1088bp|location=Sequence derived from alignment at C-tenellus_contig10454:1079..2166- (Choristocarpus tenellus KU2346)
GTTAGTAAAATCGCCTAGTTGGTAGTCATCGGATTACAGGTTGCGTTCGA
CCCAGACAACGCGCACTCGTTTTTGAGTCAGGAGACTCCCTCGACGTTGC
CTTCTTGAAGGGTTGCTGAAAATCCCAATCTCCAACTCAAACCCATCACG
TGTTTCAATTCGAAGATGCCATCCATTTTCGTGTTTGCCCAACATGAAGT
CCCGGACAAGAGGCGTGTTGAGGTGAACTTGAGCAATCGGTTGATGCCAG
TGACAGCACTACAGGACGAGATTGAGAACATCTTTGGAGTAGCGCCCTCT
GATCAACGTCTGGCTTTCAAGGGGAAGCTGATGCGAGCCGAGGTAGGCGT
ACACTAGACTTCTAGGTCACGTCTCACCACCACGAAATGAAAACATGGAA
ACTCCCCACGTCCTTCTGGAGTTAAAGATTAGCCTTATGGAGATGGTGTT
GCACAATGAGTTGTACAAACACGCCCGAAATCTATGCATCTTCGTAAAGG
AGCCCCAAGTTCGCCTAACCTCACAGCACAATACCTACTCCAACATTTCA
CCTGTGTGGGCATGTGTGCATGTGTGTGTGTGTTTACATGTAGAATGAAG
AGGGAAAGAAGACAACCCTCTTCGACTACGGCATCAACCGTAACGACGTC
GTGCAAATGTTTCCTCCCAAGAGCGTTGCCCTCAAGAAGTCGGCTGATGC
TGCAGCTGCCGCAGCTGCTAGGGCGAGCGCCGCACCTGGTCCTGCTTCAC
AATCGACTTCGCATCAAGAGGTGGGGTGTTTTTGACTGACGGCGCGTGGC
CTTTTGCGACACTGGAGTGGTTTCTCTATCGATCTTGCCGAAGCGTAGTC
CGTCTGATATGTAAGAGCTGCAGTTTAAAGGGAGGCACATTCTCTTGTGA
TGGATAGACCATCAATACTGCACAGGCTGAGAAGTGGAAAGCATGCCAGG
ATAAGGAATATTTCTCCATTGCCACATTTCCACGGATTGCAGGTGAATGG
CGATGTAAAACTGTCGGAAGAAGCAGCTCCAGACGAGAAAACCAGAAAGG
AAGAAGAGAAGGAACCTATTGGGGCAGCCTTCCTCGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig10454:1079..2166-

>mRNA_C-tenellus_contig10454.1.1 ID=mRNA_C-tenellus_contig10454.1.1|Name=mRNA_C-tenellus_contig10454.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=450bp|location=Sequence derived from alignment at C-tenellus_contig10454:1079..2166- (Choristocarpus tenellus KU2346)
ATGCCATCCATTTTCGTGTTTGCCCAACATGAAGTCCCGGACAAGAGGCG
TGTTGAGGTGAACTTGAGCAATCGGTTGATGCCAGTGACAGCACTACAGG
ACGAGATTGAGAACATCTTTGGAGTAGCGCCCTCTGATCAACGTCTGGCT
TTCAAGGGGAAGCTGATGCGAGCCGAGAATGAAGAGGGAAAGAAGACAAC
CCTCTTCGACTACGGCATCAACCGTAACGACGTCGTGCAAATGTTTCCTC
CCAAGAGCGTTGCCCTCAAGAAGTCGGCTGATGCTGCAGCTGCCGCAGCT
GCTAGGGCGAGCGCCGCACCTGGTCCTGCTTCACAATCGACTTCGCATCA
AGAGGTGAATGGCGATGTAAAACTGTCGGAAGAAGCAGCTCCAGACGAGA
AAACCAGAAAGGAAGAAGAGAAGGAACCTATTGGGGCAGCCTTCCTCGAC
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