mRNA_C-tenellus_contig1045.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1045.2.2
Unique NamemRNA_C-tenellus_contig1045.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A6H5KBH2_9PHAE (EF1_GNE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH2_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 7.390e-83
Identity = 170/238 (71.43%), Postives = 193/238 (81.09%), Query Frame = 1
Query:    1 MAPKFDLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGAT-TAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKP-EKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            MAPKFDLSTPKG++ FNGY++++SYVEGY+YS+ADADMFA C   PDKA APHAYRW+IHIAAI GVRSL+ + ++ +APAA XXXXXXXXX        XXXXXXXXXXXXX          A+KP EKSRA+ M EAKAAKDAKKK+DRSQIV EVKPW+ +TDL  LF  I K  I+GLVWGEA+KLVPVAFGVKKLVLSCVVED KVGVEDITD IE F++ VQSVDMTTMNRL
Sbjct:    1 MAPKFDLSTPKGLMPFNGYISSKSYVEGYSYSQADADMFATCAGVPDKAKAPHAYRWYIHIAAIKGVRSLSLAPSSGSAPAAXXXXXXXXXXAAKATKVDXXXXXXXXXXXXXXXXX------AAKPAEKSRAEKMAEAKAAKDAKKKVDRSQIVFEVKPWDTETDLKGLFAKICKTKIEGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEGFEDEVQSVDMTTMNRL 232          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A485LAV1_9STRA (Aste57867_18076 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAV1_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.720e-46
Identity = 122/231 (52.81%), Postives = 163/231 (70.56%), Query Frame = 1
Query:   16 DLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGATTAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKPEKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            DL+T  G+   NG++TA+SYVEG+ +S AD+ +FA  PS+PD    P+ YRW++H A+ +G+R    + + TA AAP    XXXXXXXXXXXXXXXXXXXXXXXXXX                 RA+  K  K  K+  K I+RSQ+V+EVKPWEA+TDL EL   I  + +DGL WGE +KLVPVAFG+KKL++ C++ D KV ++DITDAIE+F++YVQSVD+ +MN++
Sbjct:    5 DLNTDIGLKKLNGFLTAKSYVEGFQFSAADSALFAKVPSTPDAGKYPNVYRWYVHTASKLGLRVALSAQSGTAAAAPKASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XRAEAAKANK--KEKPKPIERSQVVIEVKPWEAETDLEELAVKIKALEVDGLTWGEGHKLVPVAFGIKKLLVQCIIIDDKVLMDDITDAIESFEDYVQSVDIASMNKM 229          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.400e-46
Identity = 88/108 (81.48%), Postives = 93/108 (86.11%), Query Frame = 1
Query:  385 SRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            SRAD M  AK AKDAKKKIDRSQIV EVKPW+ +TDL ELF  I    IDGLVWGEA+KLVPVAFGVKKLVLSCVVED KVGVEDITD IEAF++YVQSVDMTTMNRL
Sbjct:   75 SRADKMAAAKKAKDAKKKIDRSQIVFEVKPWDTETDLKELFGKICATEIDGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEAFEDYVQSVDMTTMNRL 182          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A6G0WJF4_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJF4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.290e-46
Identity = 116/231 (50.22%), Postives = 160/231 (69.26%), Query Frame = 1
Query:   16 DLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGATTAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKPEKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            DL+T  G+   NG++TA+SY+EG+ +S AD+++FA  P++PD +  P+ YRW++H AA +G+  +  S  +  PAA XXXXXXXXXXXXX        XXXXXXXXX                 RA+  K  K  K+  K I+RSQ+V+EVKPWEA+TDL EL   I +V +DGL WGE +KLVPVAFG+KKL++ C++ D KV ++DIT+AIEAF++YVQSVD+ +MN++
Sbjct:    5 DLNTDIGLKKLNGFLTAKSYIEGFQFSAADSNLFAKVPATPDASKYPNVYRWYVHTAAKLGLH-VALSAQSATPAAXXXXXXXXXXXXXXPAKKEAEDXXXXXXXXXXXXXXXXXXXXXX---XRAEAAKANK--KEKPKPIERSQVVIEVKPWEAETDLEELAAKIKQVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKVLMDDITEAIEAFEDYVQSVDIASMNKM 229          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A835YW42_9STRA (Eukaryotic elongation factor-1 B beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW42_9STRA)

HSP 1 Score: 160 bits (406), Expect = 7.910e-43
Identity = 126/233 (54.08%), Postives = 153/233 (65.67%), Query Frame = 1
Query:   10 KFDLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGATTAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKPEKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMIS-KVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNR 705
            KFD +  KG+   NG++ +RSY+EGYAYS AD+ +FAAC  +PDKAT PHAYRW+IH+AA+ G+RSLN S A  AP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                 KI+ S +V EVKPWEAD DL  L++ I  K  +DGL W E   L PVAFG+ KLV++C +ED KVG+ DI+D IEA ++ VQSVD+  M R
Sbjct:    5 KFDPTNAKGLGALNGFLASRSYMEGYAYSAADSALFAACNGAPDKATYPHAYRWYIHVAALTGLRSLNLSAA--APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXKIEMSNVVYEVKPWEADQDLKALYEKIKEKCAMDGLRWSEGCTLAPVAFGINKLVIACTIEDDKVGLNDISDMIEALEDDVQSVDLVNMQR 228          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: W4FR25_9STRA (EF1_GNE domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR25_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.810e-41
Identity = 96/232 (41.38%), Postives = 144/232 (62.07%), Query Frame = 1
Query:   16 DLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVR-SLNFSGATTAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKPEKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            D+++  G+   NG++TA+SY+EGY +S AD+ +F+   + PD A  P+ YRW++H A+ +G+R +L        P++P         X           XXXXXXXXX                 RAD  K  K  K+  K ++RSQ+V+EVKPWEA+TDL +L   I  + I+GL WGE +KLVPVA+G+KKL++ C++ D  V ++DITDAIE+F+++VQSVD+ +MN++
Sbjct:    5 DVASEVGLKKLNGFLTAKSYIEGYQFSAADSTLFSKFTTVPDAAKVPNVYRWYVHTASKLGLRVALTARNQVAQPSSPKAAAKPSTPXASTPKAAKPADXXXXXXXXXXXXXXXXXXXXXXXXXXRADAAKAGK--KEKAKPVERSQVVIEVKPWEAETDLLDLAAKIKALEINGLTWGEGHKLVPVAYGIKKLLVQCIIVDDLVLLDDITDAIESFEDFVQSVDVASMNKV 234          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: D8LM77_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM77_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.220e-41
Identity = 95/128 (74.22%), Postives = 101/128 (78.91%), Query Frame = 1
Query:  337 LFGDDEE----EAPASKPEKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            LFGDDE     EAPAS    SRA+ M  AK+AKDA KK+DRSQIV EVKPWEA  DL  LF  I K  IDGLVWGEA+KLVPVAFGVKKLVLSCVV DSKVGVEDITD IE F++ VQSVDMTTMNRL
Sbjct:  722 LFGDDEAGEEGEAPASGAGMSRAEQMAAAKSAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRKTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKVGVEDITDVIEKFEDEVQSVDMTTMNRL 849          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A024TSA9_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSA9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 5.380e-40
Identity = 104/233 (44.64%), Postives = 146/233 (62.66%), Query Frame = 1
Query:   16 DLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGATTAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKPEKSRADIMKEAKAA--KDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            D+ +  G+   NG++TA+SY+EG+ +S AD+ +FA   + PD A  P+ YRW+IHIA+ +G+R +  +  T + A P     XXXXXXXXX           XXXXX                       EA  A  K+  K ++RSQ+VLEVKPWEA+TDL EL   I  + I+GL WGE +KLVPVAFG+KKL++ C++ D  V ++DIT+AIEAF++YVQSVD+ +MN++
Sbjct:    5 DVESEVGLKKLNGFLTAKSYIEGFQFSAADSALFAKFNAVPDAAKVPNVYRWYIHIASKLGLR-VALAARTPSAAKPSTPKAXXXXXXXXXSTPKGKKPAADXXXXXXXXXXXXXXXXXXXXXXXXXXRAEAAKAGKKEKAKPVERSQVVLEVKPWEAETDLVELAGKIKALEINGLNWGEGHKLVPVAFGIKKLLIQCIIVDDLVLLDDITEAIEAFEDYVQSVDVASMNKV 236          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A812VGE6_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VGE6_SYMMI)

HSP 1 Score: 152 bits (384), Expect = 1.550e-39
Identity = 94/239 (39.33%), Postives = 136/239 (56.90%), Query Frame = 1
Query:   31 KGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGATTA-PAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPA-----SKPEKSRADIMKEAKAA-------KDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
            K V   N ++  RSYVEGY+ S AD    AA    P KA+APHA+RW +HI A+IGV ++ FSG+ ++ P A                               +FGD+E          +K  + R  + K+ K         K  +K +++S IVLEVKPWEADTDL  ++K I K   +GL WG ++KL PVAFG+KKLV++C + DS V ++D+TD IEA +++VQSV++ +MN++
Sbjct:   14 KSVNELNQHLATRSYVEGYSLSDADRAALAALGGVPSKASAPHAFRWAVHIMALIGVENVTFSGSVSSEPTAAVQKEAKKPAATDDFDD--------------MFGDEEXXXXXXXXXXNKARQERMALAKKLKXXXXXXXXXKQKEKPVEKSLIVLEVKPWEADTDLEAVWKEIIKYEQEGLQWGASFKLEPVAFGIKKLVMTCTIVDSLVLLDDVTDNIEAMEDFVQSVNVASMNKI 238          
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Match: A0A024GJX5_9STRA (EF1_GNE domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJX5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.720e-39
Identity = 110/231 (47.62%), Postives = 151/231 (65.37%), Query Frame = 1
Query:   16 DLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKATAPHAYRWFIHIAAIIGVRSLNFSGATTAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDDEEEAPASKPEKSRADIMKEAKAAKDAKKKIDRSQIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVLSCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL 708
             L  P+G+   NG++T+RSY++GY+ S  D  ++    S P+ +T P+ YRW++HIA+  G+R+L +SG+ +     XXXXXXXXXXXXXXXXXXXXXXX                        RA+  K AKA K+ KK ++RSQ+V EVKPWE +T+L EL   I     +GL WGE +KLV VAFG+KKL++ CV+ D  V +EDITD IE F++YVQSVD+ +MN++
Sbjct:    7 QLDRPEGLKKLNGFLTSRSYIDGYSLSDTDLTVYKQIASCPEPSTYPNVYRWYVHIASKCGIRTL-WSGSASKKXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------RAETAKNAKA-KEKKKVVERSQVVCEVKPWEQETNLEELAIKIKATKKEGLTWGEGHKLVDVAFGIKKLLVQCVILDDLVSLEDITDIIEQFEDYVQSVDIASMNKI 211          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1045.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH2_9PHAE7.390e-8371.43EF1_GNE domain-containing protein n=2 Tax=Ectocarp... [more]
A0A485LAV1_9STRA1.720e-4652.81Aste57867_18076 protein n=1 Tax=Aphanomyces stella... [more]
A0A6H5JFV9_9PHAE4.400e-4681.48EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
A0A6G0WJF4_9STRA9.290e-4650.22EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A835YW42_9STRA7.910e-4354.08Eukaryotic elongation factor-1 B beta n=1 Tax=Trib... [more]
W4FR25_9STRA1.810e-4141.38EF1_GNE domain-containing protein n=3 Tax=Aphanomy... [more]
D8LM77_ECTSI3.220e-4174.22Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A024TSA9_9STRA5.380e-4044.64EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A812VGE6_SYMMI1.550e-3939.33Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A024GJX5_9STRA2.720e-3947.62EF1_GNE domain-containing protein n=1 Tax=Albugo c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1045contigC-tenellus_contig1045:6614..11514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPS7
Preferred nameCARS
PFAMsEF1_GNE,tRNA-synt_1e
Model size1445
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K15410
KEGG ReactionR02918,R03650,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons6
Evalue3.59e-87
EggNOG OGsCOG2092@1|root,KOG1668@2759|Eukaryota
Ec32 ortholog descriptioneukaryotic elongation factor-1 B beta
Ec32 orthologEc-18_002310.1
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.9
Descriptiontranslation elongation factor activity
Cds size711
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1045.2.2prot_C-tenellus_contig1045.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1045 7348..11514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789131.8088799-UTR-C-tenellus_contig1045:6613..73471680789131.8088799-UTR-C-tenellus_contig1045:6613..7347Choristocarpus tenellus KU2346UTRC-tenellus_contig1045 6614..7347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789131.8240008-CDS-C-tenellus_contig1045:7347..74341680789131.8240008-CDS-C-tenellus_contig1045:7347..7434Choristocarpus tenellus KU2346CDSC-tenellus_contig1045 7348..7434 -
1680789131.8357337-CDS-C-tenellus_contig1045:8439..86171680789131.8357337-CDS-C-tenellus_contig1045:8439..8617Choristocarpus tenellus KU2346CDSC-tenellus_contig1045 8440..8617 -
1680789131.8470335-CDS-C-tenellus_contig1045:9085..92341680789131.8470335-CDS-C-tenellus_contig1045:9085..9234Choristocarpus tenellus KU2346CDSC-tenellus_contig1045 9086..9234 -
1680789131.8553889-CDS-C-tenellus_contig1045:9894..99851680789131.8553889-CDS-C-tenellus_contig1045:9894..9985Choristocarpus tenellus KU2346CDSC-tenellus_contig1045 9895..9985 -
1680789131.8640876-CDS-C-tenellus_contig1045:10503..106101680789131.8640876-CDS-C-tenellus_contig1045:10503..10610Choristocarpus tenellus KU2346CDSC-tenellus_contig1045 10504..10610 -
1680789131.8778462-CDS-C-tenellus_contig1045:11415..115141680789131.8778462-CDS-C-tenellus_contig1045:11415..11514Choristocarpus tenellus KU2346CDSC-tenellus_contig1045 11416..11514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1045.2.2

>prot_C-tenellus_contig1045.2.2 ID=prot_C-tenellus_contig1045.2.2|Name=mRNA_C-tenellus_contig1045.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=237bp
MAPKFDLSTPKGVLGFNGYMTARSYVEGYAYSKADADMFAACPSSPDKAT
APHAYRWFIHIAAIIGVRSLNFSGATTAPAAPAPAPAAAASKKAAPKAKA
KCDDDGDDDDDDLFGDDEEEAPASKPEKSRADIMKEAKAAKDAKKKIDRS
QIVLEVKPWEADTDLNELFKMISKVVIDGLVWGEAYKLVPVAFGVKKLVL
SCVVEDSKVGVEDITDAIEAFDEYVQSVDMTTMNRL*
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mRNA from alignment at C-tenellus_contig1045:6614..11514-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1045.2.2 ID=mRNA_C-tenellus_contig1045.2.2|Name=mRNA_C-tenellus_contig1045.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4901bp|location=Sequence derived from alignment at C-tenellus_contig1045:6614..11514- (Choristocarpus tenellus KU2346)
ATGGCGCCCAAGTTTGACCTTTCAACACCAAAGGGTGTGTTGGGTTTCAA TGGCTACATGACCGCCAGGTCCTATGTGGAGGGATATGCCTACTCGAAGG TGCTCGATGATTTTCTGTAGATTCTCCCTGTTCACTCTCACTAACTGAAG CATCAAAGGCCTAAGCTGTGTTTCAGTCAATGTATTTCCAAAGGGTTAAA TGCCAGCACTGAACATGTGATAGGTAGAACACATAGCTCTTTTGAGGGTC GATCCTTCCGCAGGGGAAGTGAGACTATCTCCCAAAACTTCACGAAGACC AGTATCAGGCATACAGATACGTGACTACCATGTCCTGTTCATTGTCAGGA CGTCCCTGTTTGAAGGCGGTGATTTATGCAGTATTATAAAAAGTTTTCTT CGTCCCTTCTAGTAGATTGTTACGTTGTCTTCGCTTTCGGTGATTGTTCG TCAATCCCACAAAATTACACTGTGCGACTGGAACTGTCCATAGCTCCAAC CTAACATTTTGTTCACAGCAACCTACAATTTTCCAAAACTGCTCGGAAAT CTCACCTTTACACCCCTTGCTAGGTTTGATGCTTTGCTATTTTTGGTTTC CCATTTTCACTCCATTTGTTGGAACTGTATCTGAAACTGGTTAGTGGATG ACTTATATGTCATCATATCCACCACTCTGTGGACGTGGATAAGGAGGATT GCATCTAACTACAAATCGTGAAATATCCAGTGCTTCTGTCCGCTTGGGTG CTGGAAGTCTGGATGTTTGTTCCATGGGATTTGCCCACGGCAGTTTGTTC CCTGTACCACGGTAGATGCACTTCCCCCCCTTCTCCGTCCCGTGCTTCGC TTCGAACCAAGCAACACTATTTGACCCAGGCAATGGCTCATATTTTTACT CCAGGCCGATGCCGACATGTTCGCAGCATGCCCCAGCTCGCCAGACAAGG CAACTGCACCACATGCCTACCGTTGGTTCATTCACATTGCCGCTATCATT GGCGTTCGGAGGTGTGTATGCTGTTTCTTACACGTCTTGCTTTCGATTCC AACATGCCTTACAGGTTGAGAGATGAAAAAAGGCTGATTGCTCAGGAAAT ATAATGGCACTTGTTTGATCCTCGAAACTGTGACTGTCGTACCACCAGTT GTTGACAGGCATGGGCCATTTGGCGTTGCACCCTGGTGTAGCTTCGATCT CATTATTAAAGTGCAATGGCAAAATTACCTTCTACCGAGTATCTATCTAT TAAGTTCATAAAGGTAAACGACTGATGTTGCCGTATGGCGACCAGAAAAG GTTCTGTTCAGCTCACAAAGATGTGTCTGTTGGAGTCTGTATCTACATCT TACCCCTGTTTCCGAGTTTTCAGTCGTTTAGTGACAAAAAGATATTGGTC TCTGCCAATGATATAGTCTCCACTTGCTCTACCTGAAAACATGTATGACA ATCCTGTTGCACCCTGTCTTCTCAACTCATATTTGCCCTGTCCACTGGTC TTGGCAATGCCTGCCTGAATGCCCCTCAGCTTGAACTTCTCTGGGGCTAC CACTGCCCCAGCTGCCCCTGCTCCTGCCCCTGCAGCGGCTGCATCCAAGA AGGCTGCCCCCAAGGCTAAGGTGAGGCGGGATCAATGCTCTGTCTCCCAG GGCTATAAGAAGCCATAACCCTACGAAGGGTATTCCTTTTCTCATCTATT TGCCACTTTCAGACTTTTGCAACTAGGGATAAGAAATCTTCTGTCATATA TATTTCATGTGTATTTTTGTTGCCTTGTCAAATTGTGCACGGTTCCATAA CTTCGGCTAAAACTTTGACCATACTGCTGAATTCTCTTGAAGACCGATAG ATTATGTAAGGTTACATAGTGTCAACAAAAGGTGGTAAGAACTTTAGTGG TGTAGACCTTTCTTGCACACACAAACATGATCTCCTTTGTTGCCTTCTGT GAAAACAAGAACATATATATACTCTGCTTGTGTGTGTAGGTTGCTCTTTT TGAGTAGATCCAAAATGCACCTTAGCCCCCCAGTGTCTTTTTTTTTGCTG CCTGATAAAGTCTGATCTAAGGCAATAGCTTGATACTTCCAAGAATAAAT TATCTTACCAGACAGAAGGTACCCTCTGAGAAGCTTGTGTATTCAACAAG AACTGTCAGTTTTGTGATTGGTAATGTCTTCTGTAATTTAGAACACAATA CACCTTTTATCATCCATCCTGATATTTTAATTAACCCCTGACCTGCCTTG TGTGTTACCGGTGCACCCTGGACTGCGAAGGCGAAATGTGATGATGATGG TGACGATGATGATGATGACCTTTTCGGAGACGATGAGGAGGAAGCCCCTG CATCCAAGCCAGAGAAGTCTCGTGCAGATATCATGAAGGAGGCCAAGGCA GCAAAAGATGCGAAAAAGAAGATAGACCGGTAGGTGCATAGGTTACTGGC ACTGGAAGGAGGATACATTGACAGGAGGCGTGAATGGAGGGGTCGGGGGT ATTTATGCGCTGTTGGTGATGGGGTTTTATAAGGCACTGTGTTAGTGTCC ATCCTTCCGGTACTATCTCCTCTCATGATCAACTGGGTAACGTGTCTTTG TCTTTTTTTGTTGAATTCGTGTTGGGGGTTGTGAATGTTGCGTATGTTAT TTTTTCAAGGCGACCTAGGGTTAGTGAACAAGTGTCAGATCTGTTTTTTA ATTTCACCCTCCCCTTAATCCCACCGCCCCCCTTCCCCCCCCCTCCCACC CCCTGCCTCCTGTGTTAGTTACCGATTNNNNNNNNNNGGGTTGGTGAAAA AGTGTCAGATTTGTTTTTTAATTTCCCCCCCCCCCCCCCCCCCCCCCCCC CTATGGTTTCGCTCTTCCCTTTTTTGTGTGACATCATCCAATTGCAGTTC TCAGATTGTGTTAGAGGTGAAGCCGTGGGAAGCTGACACTGACCTCAATG AACTCTTCAAGATGATTTCCAAGGTTGTTATTGATGGCCTAGTATGGGGC GAGGCATACAAGCTGGTCCCAGTCGCTTTTGGTGTGAAAAAGCTCGTTCT CTCCTGTGTGGTGGAAGATTCAAAGGTAAATGGGGTAGGGGTTGGTTGAA TTGTGGGAGGAGATACGTGTCTTGGGGGGTGGTGATGTCTACTTTCTGGT TGCTTAGTAGAAGTAAGAAGTTACGAGTGATTGGAGATTAATGTTCTCTT GTCAATAATAGACCTGTAAAATTGTAGCTTTTTTGGTTCATTATATACTG CGTATTCGTTACGTGATTATAGTAATGTGAGTTTGCCATTTGCAGAGCCT TCCTATACTCTCGGCTTTTGCAAGGCTAAAAGGTTGATTTTATTTTTTGC TTTGAATGATCTGATCCAACGGATTTTATATAATCTTTGAATTGATTTGA ACCTCAATTTAATTTTTTTCATGTAAAAAAAAGTTGATTACCAAGTATAT TTCATTGTTAGTTTGAGATTTTTTTTGTGTGCTTTTAGCTGAAGCTATTC TCAAGATCACCTAAACCCAGGTCTGTTTCTGATTTACATCATATGAAAAT TCTGGTTACTAATACTGCATATTTGTCAATGGAGTATATTCTCTTGAGGT GTGTTTGGTTTTTGTATCTCTTGGGACCTGAATTGACATGAGGAAGGAAC TGCAGGCATGGCTAATGCATCAGGCCAACCAGCAAGAGTGAATTCCAACA TTTTTGTTTGGGTAGAAAATGTCCCTTGAAATTTCAAGTTTGTAGTGAAG TTCAATAAAAAGTCTTACCTTCAAATTTGATGTTGTGGTCAGAGGTGATA ATATCCACAGGCATAAATCTTGTGAGGTAATACCCTATATTTTTTTGCAA TAAAGAGTTGAGTTAACTGAAGCTCACTCTCCACTGATTGTGAATATCTT GAACTCGTTTTCACCATCTGAAGAACTTTTGGCATGAGAGAGCATGTGGT ATCTTGAGGGTATGATGGTAGTGAAGAGAGATTTTTTGTGGATGTTGACA GAGTTGGCGTGTTTGCGCTGTGTAATCTTCTGACATACCTTTCATCCTTT GTTCCCATGCGCCCCCTTGCTGATTGCCAGGTTGGAGTAGAAGACATCAC CGATGCAATTGAAGCTTTTGATGAATATGTTCAGTCTGTTGACATGACAA CCATGAACCGTCTTTGAGTTGTGTGATGTGTTACATTTAGGAAGATTGGA CATGGTAGGGGTCAAAGAAAAGTAGTTCAAGAAATGTCAGGGGAGTACAG TCAGGCAGAAGATGCCGCAAAACTCATTCCTGACAACCTTGTGACTTAGG GGTCAAATTTCATTTATATATTCTTGGTGTGCTTTCCTTACTTGTATTGA TGATTGCCACAGTCATTAAACCACACTTTTTTCTCGCCTGTTTCTTCACA AAATGTGAAAGCACATCTTTCTGGGCTCTCAGGTTGTAGGGCCAGGTGAC TGCCAAGTCAGGTCATGTTCCATGATACACGTCTCTACGGTGAACCCACT AGATGAATACCATTCACTTCATCTCTAAATGAAAACCGTTATGTAGTGAC CTGGTATAATTAGAGCATTGCCCCATCATGGGTAACCCTTTCCCCTCGTC AAAATTCAAATAGAGGGGCCTTGTATACACCTCGCAGAGTCTTACTTCTG TCTTGATTACTAGAGCTGGACCAATTTTGTAATCATTGACTCCTTTTTGT TTGGTATGGATACAATAGTGGTGTGAGTAGAGTGTGGAATACAAAAATTT ATTTCAATCGTGAACTGTTCGTGTACAATTGTTGCTTTAAAGTTTGGTGC CCCTTCTATGATAATATGTACCACAAATTCTTTGAATCTCAATGGGTCGA TAAAGTAAATGCATTATGTTCAGTAACCTTCTTAGTGTTCATCTCTCCGC A
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Coding sequence (CDS) from alignment at C-tenellus_contig1045:6614..11514-

>mRNA_C-tenellus_contig1045.2.2 ID=mRNA_C-tenellus_contig1045.2.2|Name=mRNA_C-tenellus_contig1045.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=711bp|location=Sequence derived from alignment at C-tenellus_contig1045:6614..11514- (Choristocarpus tenellus KU2346)
ATGGCGCCCAAGTTTGACCTTTCAACACCAAAGGGTGTGTTGGGTTTCAA
TGGCTACATGACCGCCAGGTCCTATGTGGAGGGATATGCCTACTCGAAGG
CCGATGCCGACATGTTCGCAGCATGCCCCAGCTCGCCAGACAAGGCAACT
GCACCACATGCCTACCGTTGGTTCATTCACATTGCCGCTATCATTGGCGT
TCGGAGCTTGAACTTCTCTGGGGCTACCACTGCCCCAGCTGCCCCTGCTC
CTGCCCCTGCAGCGGCTGCATCCAAGAAGGCTGCCCCCAAGGCTAAGGCG
AAATGTGATGATGATGGTGACGATGATGATGATGACCTTTTCGGAGACGA
TGAGGAGGAAGCCCCTGCATCCAAGCCAGAGAAGTCTCGTGCAGATATCA
TGAAGGAGGCCAAGGCAGCAAAAGATGCGAAAAAGAAGATAGACCGTTCT
CAGATTGTGTTAGAGGTGAAGCCGTGGGAAGCTGACACTGACCTCAATGA
ACTCTTCAAGATGATTTCCAAGGTTGTTATTGATGGCCTAGTATGGGGCG
AGGCATACAAGCTGGTCCCAGTCGCTTTTGGTGTGAAAAAGCTCGTTCTC
TCCTGTGTGGTGGAAGATTCAAAGGTTGGAGTAGAAGACATCACCGATGC
AATTGAAGCTTTTGATGAATATGTTCAGTCTGTTGACATGACAACCATGA
ACCGTCTTTGA
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