mRNA_C-tenellus_contig10437.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10437.2.1
Unique NamemRNA_C-tenellus_contig10437.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10437.2.1 vs. uniprot
Match: A0A6H5L3V7_9PHAE (GT24 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.680e-11
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GRTQHVSLTAPWPTSCLSPLAEAAEFLAEGDEREELLWEYAEALTGIPEWMHS 159
            GRTQ VS++APWPTSCLSPLAEA+EF+AEG +   L W+Y EAL   P  + S
Sbjct:   56 GRTQFVSVSAPWPTSCLSPLAEASEFVAEGGDG--LFWDYVEALGDAPHSLFS 106
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BLAST of mRNA_C-tenellus_contig10437.2.1 vs. uniprot
Match: D7G655_ECTSI (UDP-glucose:glycoprotein glucosyltransferase, N-terminal, family GT24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G655_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.130e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GRTQHVSLTAPWPTSCLSPLAEAAEFLAEGDEREELLWEYAEALTGIPEWMHS 159
            GRTQ VS++APWPTSCLSPLAEA+EF+AEG     L W+Y EAL   P  + S
Sbjct:   56 GRTQFVSVSAPWPTSCLSPLAEASEFVAEGGGG--LFWDYVEALADAPHSLFS 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10437.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3V7_9PHAE1.680e-1162.26GT24 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D7G655_ECTSI3.130e-1162.26UDP-glucose:glycoprotein glucosyltransferase, N-te... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10437contigC-tenellus_contig10437:4806..4964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G655
PFAMsGlyco_transf_8,UDP-g_GGTase
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.13e-12
EggNOG OGsKOG1879@1|root,KOG1879@2759|Eukaryota
DescriptionUDP-glucose:glycoprotein glucosyltransferase activity
Cds size159
COG categoryM
CAZyGT24
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789131.3380592-CDS-C-tenellus_contig10437:4805..49641680789131.3380592-CDS-C-tenellus_contig10437:4805..4964Choristocarpus tenellus KU2346CDSC-tenellus_contig10437 4806..4964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10437.2.1prot_C-tenellus_contig10437.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10437 4806..4964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10437.2.1

>prot_C-tenellus_contig10437.2.1 ID=prot_C-tenellus_contig10437.2.1|Name=mRNA_C-tenellus_contig10437.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=53bp
GRTQHVSLTAPWPTSCLSPLAEAAEFLAEGDEREELLWEYAEALTGIPEW
MHS
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mRNA from alignment at C-tenellus_contig10437:4806..4964-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10437.2.1 ID=mRNA_C-tenellus_contig10437.2.1|Name=mRNA_C-tenellus_contig10437.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=159bp|location=Sequence derived from alignment at C-tenellus_contig10437:4806..4964- (Choristocarpus tenellus KU2346)
GGTCGCACTCAACACGTTAGTCTGACCGCGCCATGGCCAACCTCCTGCCT
CTCCCCGCTTGCCGAAGCTGCCGAATTTCTGGCCGAGGGCGACGAGAGGG
AAGAGCTTCTATGGGAATATGCCGAGGCACTTACGGGAATCCCAGAGTGG
ATGCATTCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10437:4806..4964-

>mRNA_C-tenellus_contig10437.2.1 ID=mRNA_C-tenellus_contig10437.2.1|Name=mRNA_C-tenellus_contig10437.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=159bp|location=Sequence derived from alignment at C-tenellus_contig10437:4806..4964- (Choristocarpus tenellus KU2346)
GGTCGCACTCAACACGTTAGTCTGACCGCGCCATGGCCAACCTCCTGCCT
CTCCCCGCTTGCCGAAGCTGCCGAATTTCTGGCCGAGGGCGACGAGAGGG
AAGAGCTTCTATGGGAATATGCCGAGGCACTTACGGGAATCCCAGAGTGG
ATGCATTCC
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