mRNA_C-tenellus_contig10424.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10424.2.1
Unique NamemRNA_C-tenellus_contig10424.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: D8LNH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.660e-22
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   67 SMYAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTLGGRSRGVPNSKVARQE 393
            S Y MS  + ARY KAF+KL KG +   LG KEAA VLAKSGL K  LG++W+++D+D+DGALSR EF++AMH+ +C+  K LPVP  LP +LG     +P  +V  +E
Sbjct:  470 SEYRMSDQDAARYDKAFNKLVKG-KGVTLGGKEAAVVLAKSGLGKRDLGRLWAMSDVDRDGALSRMEFSIAMHLVSCSAKKGLPVPRALPESLGAL---LPQPEVQSEE 574          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: A0A6H5L1M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.960e-21
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   67 SMYAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTLG 348
            S Y MS  + ARY KAF KL KG +   LG K+AA VLAKSGL K+ LG +W ++D+D+DGALSR EF++AMH+ +C+  K LPVP  LP +LG
Sbjct: 1146 SEYRMSDQDAARYGKAFDKLVKG-KGVTLGGKKAAVVLAKSGLRKKDLGHLWVMSDVDRDGALSRMEFSIAMHLASCSAKKGLPVPRALPESLG 1238          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: UPI0006C94532 (epidermal growth factor receptor substrate 15-like 1 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C94532)

HSP 1 Score: 76.3 bits (186), Expect = 1.410e-13
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   61 VDSMYAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTLGGRSR 360
            + S + ++PAER +Y   F  L  G   GY+   +   +L  S L  E LGK+W LAD+D+DG L+R EF VAMH+   A+ KH P+P+ LP  L   +R
Sbjct:  108 LSSFWTITPAEREKYQLLFQNL--GPENGYVSGNKVKGILMDSKLPLESLGKIWDLADMDRDGKLNRHEFFVAMHLVCKAVQKH-PIPNVLPIELMDSNR 204          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: G2QNG3_MYCTT (Uncharacterized protein n=1 Tax=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) TaxID=573729 RepID=G2QNG3_MYCTT)

HSP 1 Score: 76.3 bits (186), Expect = 1.480e-13
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   52 GDEVDSMYAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTLGGRSRGVPNSKVARQ 390
            G +    + +SPA++AR+ + + +LDKG R GY+  +EA    ++S L ++ L ++W LADI+ +G LSRDEFAVAM++      K  P+P  LP  L      VP S  A+Q
Sbjct:  284 GPQTTGEWLISPADKARFDQLYDELDKGKR-GYITGEEAVPFFSQSNLSEDILAQIWDLADINSEGRLSRDEFAVAMYLIRQQRTKSAPLPATLPPNL------VPPSMRAQQ 389          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: W7U4B0_9STRA (Uba ts-n domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4B0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-13
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   79 MSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTL 345
            MS  +RARY   F   D     G++   +A ++ ++SGL++  LG+VW LAD DKD  LS  EFAVAMH+  C   + LPVP+ LP +L
Sbjct:    1 MSSEDRARYLNHFGPCDVNG-DGFVDGPQAVELFSRSGLDRSVLGRVWDLADADKDSRLSPGEFAVAMHLIVCISKRGLPVPERLPPSL 88          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: A0A1B6F3A0_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6F3A0_9HEMI)

HSP 1 Score: 69.3 bits (168), Expect = 9.520e-13
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 YAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTL 345
            +++   E+ RY K F  L      G+L   +  KVL  S L  + LGK+W LADIDKDG L+R+EF VAMH+   A+ KH  +P+ LP  L
Sbjct:    7 WSIKAVEKERYLKLFDSLQPS--NGFLSGDKVKKVLMDSKLPLKTLGKIWDLADIDKDGMLNRNEFIVAMHLVYKALEKHA-IPNTLPPEL 94          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: A0A182EAD1_ONCOC (Uncharacterized protein n=4 Tax=Onchocerca TaxID=6281 RepID=A0A182EAD1_ONCOC)

HSP 1 Score: 73.2 bits (178), Expect = 1.660e-12
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   61 VDSMYAMSPAERARYHKAFSKLDKGARTGY-------LGTKE-AAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLP 336
            VDS+Y MS  ++A Y K F+ L K   TGY        G  E   +   +SGL++EKL K+WSL+D+++DG L  +EF+ AMH+    I  ++P+PD +P
Sbjct:  207 VDSLYGMSEEQKAYYTKCFNHLMKKT-TGYSDINGAICGANEHVVEFFKRSGLDREKLSKIWSLSDVNEDGYLDLNEFSAAMHLIVLHIKGYIPIPDVIP 305          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: S4RTV0_PETMA (Epidermal growth factor receptor pathway substrate 15 like 1 n=7 Tax=Petromyzon marinus TaxID=7757 RepID=S4RTV0_PETMA)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-12
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   28 GSTSTGDSGDEVDSMYAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTL 345
            GS   G S    ++ + + P E+ ++   F  L  G   G L  ++   VL  S L  E LGKVW L+DIDKDG L RDEFAVAMH+   A+ K  PVP  +P  L
Sbjct:  107 GSPQLGSSAQNPEAFWVVKPDEKTKFDGIFDSL--GPANGLLSGEKVKPVLINSNLPMEVLGKVWDLSDIDKDGHLDRDEFAVAMHLVYRALDKE-PVPSVIPPKL 209          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: UPI001B88D9A1 (LOW QUALITY PROTEIN: intersectin-1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D9A1)

HSP 1 Score: 72.8 bits (177), Expect = 2.320e-12
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   94 RARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTL 345
            R RY+  F+  DK  R+G+L  ++A K L +S L+K+ L K+W LAD+DKDG LS DEFA+AMH+   A  K + +P  LP  L
Sbjct:   10 RRRYNSIFNSYDKS-RSGHLSGEDARKALTRSDLDKDTLRKIWELADVDKDGRLSSDEFAIAMHLIERAQ-KGIALPTSLPPGL 91          
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Match: UPI00057A9593 (uncharacterized protein LOC105118166 n=1 Tax=Populus euphratica TaxID=75702 RepID=UPI00057A9593)

HSP 1 Score: 72.8 bits (177), Expect = 2.330e-12
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   67 SMYAMSPAERARYHKAFSKLDKGARTGYLGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCAIIKHLPVPDHLPTTLGGRSRGVPNSKVA 384
            S +++ PAER +Y + F +L      G +   +   VL +S L  E LGK+W LAD DKDG L R EF VAMH+   A+ KH     H+PTTL    R  P   V+
Sbjct:  126 SDWSIKPAEREKYSQLFDELQPN--NGLIAGNKVKGVLMESKLPLETLGKIWDLADQDKDGMLDRHEFLVAMHLVYKALEKH-----HIPTTLPAELRRAPPRPVS 224          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10424.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNH4_ECTSI2.660e-2252.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1M4_9PHAE5.960e-2156.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0006C945321.410e-1342.00epidermal growth factor receptor substrate 15-like... [more]
G2QNG3_MYCTT1.480e-1339.82Uncharacterized protein n=1 Tax=Myceliophthora the... [more]
W7U4B0_9STRA1.900e-1344.94Uba ts-n domain containing protein n=1 Tax=Nannoch... [more]
A0A1B6F3A0_9HEMI9.520e-1343.96Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
A0A182EAD1_ONCOC1.660e-1241.00Uncharacterized protein n=4 Tax=Onchocerca TaxID=6... [more]
S4RTV0_PETMA1.720e-1242.45Epidermal growth factor receptor pathway substrate... [more]
UPI001B88D9A12.320e-1247.62LOW QUALITY PROTEIN: intersectin-1-like n=1 Tax=Gi... [more]
UPI00057A95932.330e-1241.51uncharacterized protein LOC105118166 n=1 Tax=Popul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10424contigC-tenellus_contig10424:3648..4654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNH4
Preferred nameREPS2
PFAMsEF-hand_4
Model size393
Max annot lvl2759|Eukaryota
KEGG koko:K08292,ko:K20068
KEGG Pathwayko04152,ko04921,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005905,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0017124,GO:0019904,GO:0022607,GO:0023052,GO:0038127,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061024,GO:0065003,GO:0065007,GO:0071840,GO:0071944
Exons2
Evalue4.36e-23
EggNOG OGsKOG0998@1|root,KOG1955@1|root,KOG0998@2759|Eukaryota,KOG1955@2759|Eukaryota
EC2.7.11.20
Descriptioncalcium ion binding
Cds size393
COG categoryG
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.8883293-CDS-C-tenellus_contig10424:3647..38751680789130.8883293-CDS-C-tenellus_contig10424:3647..3875Choristocarpus tenellus KU2346CDSC-tenellus_contig10424 3648..3875 -
1680789130.900803-CDS-C-tenellus_contig10424:4489..46541680789130.900803-CDS-C-tenellus_contig10424:4489..4654Choristocarpus tenellus KU2346CDSC-tenellus_contig10424 4490..4654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10424.2.1prot_C-tenellus_contig10424.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10424 3648..4654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10424.2.1

>prot_C-tenellus_contig10424.2.1 ID=prot_C-tenellus_contig10424.2.1|Name=mRNA_C-tenellus_contig10424.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=131bp
EGEDSKVIGGSTSTGDSGDEVDSMYAMSPAERARYHKAFSKLDKGARTGY
LGTKEAAKVLAKSGLEKEKLGKVWSLADIDKDGALSRDEFAVAMHITTCA
IIKHLPVPDHLPTTLGGRSRGVPNSKVARQE
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mRNA from alignment at C-tenellus_contig10424:3648..4654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10424.2.1 ID=mRNA_C-tenellus_contig10424.2.1|Name=mRNA_C-tenellus_contig10424.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1007bp|location=Sequence derived from alignment at C-tenellus_contig10424:3648..4654- (Choristocarpus tenellus KU2346)
GAGGGAGAGGACTCCAAAGTGATTGGTGGATCGACATCAACAGGGGACTC TGGAGATGAGGTGGACTCAATGTATGCAATGAGCCCAGCGGAGAGGGCGA GATACCATAAAGCATTCTCAAAATTGGATAAAGGTGCTAGGACAGGCTAC CTTGGTACAAAGGAGGTGGGAATCTTATGAGGAATGGGTTTCTCAACAGT ATTGTATACGCATTGGGACTCCCAACATACTACTGTTCGCATTGTGTATC ACTCATCTGATGCATAGCACCATCTTTTGTGCCTCCCAATTGTATACTGA ACCTCCAATTGCATACTGAACCTCCAATTGTATACTGAACCTCCAATTGT ATACTGAACCTCCAATTGTATACTGAACCTCCAATTGTATAGTGAACCTC CAATTGTATAGTAAACCTCCAATTGTATACTGAACCTCCAGTACCAACGT CCAAAAAAGCACAAGCTGCCTCCAGCCTCAAGTGTGTCCCGTATTTTCAC TGAGTGAAAGTATATCTTAGAGGGTGCGAGTTTTGCCCTGTATGTCCATT TGGGGCTTGGCTTCCCATGTTTTTTTTAATGACATTTTCCTACTCCAAAA TATTTCGGAGTAGGTAAAATATATATGCATTATGAAATGGTGTGTCCAGA ACGTGGATATTGACACTTCCTAGCAAACACAATAGCCAAAATTACACCAG AATCACAACATTGGATTTTGACCCCCAAATGGACGCGGATCTACCCTCTA AGATATTTTGGCTCACTTACCGTATGCAGGCAGCCAAAGTTTTGGCCAAA TCTGGGCTGGAAAAGGAAAAATTAGGCAAGGTATGGTCACTGGCTGATAT AGACAAGGATGGTGCCTTATCAAGGGACGAGTTTGCAGTGGCGATGCACA TCACTACCTGTGCTATTATTAAACACTTGCCTGTACCAGATCACTTGCCA ACTACCCTAGGGGGCAGAAGTAGAGGTGTGCCAAACTCGAAAGTTGCAAG GCAGGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10424:3648..4654-

>mRNA_C-tenellus_contig10424.2.1 ID=mRNA_C-tenellus_contig10424.2.1|Name=mRNA_C-tenellus_contig10424.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=393bp|location=Sequence derived from alignment at C-tenellus_contig10424:3648..4654- (Choristocarpus tenellus KU2346)
GAGGGAGAGGACTCCAAAGTGATTGGTGGATCGACATCAACAGGGGACTC
TGGAGATGAGGTGGACTCAATGTATGCAATGAGCCCAGCGGAGAGGGCGA
GATACCATAAAGCATTCTCAAAATTGGATAAAGGTGCTAGGACAGGCTAC
CTTGGTACAAAGGAGGCAGCCAAAGTTTTGGCCAAATCTGGGCTGGAAAA
GGAAAAATTAGGCAAGGTATGGTCACTGGCTGATATAGACAAGGATGGTG
CCTTATCAAGGGACGAGTTTGCAGTGGCGATGCACATCACTACCTGTGCT
ATTATTAAACACTTGCCTGTACCAGATCACTTGCCAACTACCCTAGGGGG
CAGAAGTAGAGGTGTGCCAAACTCGAAAGTTGCAAGGCAGGAA
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