mRNA_C-tenellus_contig10424.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10424.1.1
Unique NamemRNA_C-tenellus_contig10424.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A3Q1AGR0_AMPOC (EH domain-containing protein n=2 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1AGR0_AMPOC)

HSP 1 Score: 53.9 bits (128), Expect = 6.640e-8
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G+V   +AA  L +SGL    L ++W++AD  R G LN Q++ IAL ++
Sbjct:    5 RQVDPTGSGRVAAADAALFLKRSGLADLVLGKIWDLADSERKGSLNKQQFFIALRLV 61
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A4W4EPU1_ELEEL (Epidermal growth factor receptor pathway substrate 15 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4EPU1_ELEEL)

HSP 1 Score: 56.6 bits (135), Expect = 7.700e-8
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G+V   EAA  L +SGL+   L +VW++AD  R G LN Q++ +AL ++
Sbjct:   35 RQVDPSGSGRVAATEAASFLKRSGLSDLVLGKVWDLADSERKGFLNKQQFFVALRLV 91
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A4W4EMK6_ELEEL (Epidermal growth factor receptor pathway substrate 15 n=7 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4EMK6_ELEEL)

HSP 1 Score: 56.6 bits (135), Expect = 7.730e-8
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G+V   EAA  L +SGL+   L +VW++AD  R G LN Q++ +AL ++
Sbjct:   35 RQVDPSGSGRVAATEAASFLKRSGLSDLVLGKVWDLADSERKGFLNKQQFFVALRLV 91
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A5J5EFM9_9PEZI (Uncharacterized protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EFM9_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 7.750e-8
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   10 VDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            VD  GRG + G+EA      SGL    LAQ+W++AD N+ G LN  E+AIA+++I
Sbjct:  329 VDKAGRGVITGEEAVPFFSNSGLPEDALAQIWDLADINKAGQLNRDEFAIAMYLI 383
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: UPI0010FAA2D5 (LOW QUALITY PROTEIN: epidermal growth factor receptor substrate 15 n=1 Tax=Scleropages formosus TaxID=113540 RepID=UPI0010FAA2D5)

HSP 1 Score: 56.2 bits (134), Expect = 1.060e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G V   +AA  L KSGLT   L ++W++AD+ R G LN Q++ IAL ++
Sbjct:   22 RQVDPSGCGHVTATDAAVFLKKSGLTDLILGKIWDLADEERKGCLNKQQFFIALRLV 78
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A0P7UXE9_SCLFO (Uncharacterized protein (Fragment) n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7UXE9_SCLFO)

HSP 1 Score: 56.2 bits (134), Expect = 1.060e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G V   +AA  L KSGLT   L ++W++AD+ R G LN Q++ IAL ++
Sbjct:   27 RQVDPSGCGHVTATDAAVFLKKSGLTDLILGKIWDLADEERKGCLNKQQFFIALRLV 83
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A8C9RWV3_SCLFO (Epidermal growth factor receptor pathway substrate 15 n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RWV3_SCLFO)

HSP 1 Score: 56.2 bits (134), Expect = 1.060e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G V   +AA  L KSGLT   L ++W++AD+ R G LN Q++ IAL ++
Sbjct:   22 RQVDPSGCGHVTATDAAVFLKKSGLTDLILGKIWDLADEERKGCLNKQQFFIALRLV 78
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: UPI001F083EB5 (epidermal growth factor receptor substrate 15-like 1 isoform X1 n=2 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F083EB5)

HSP 1 Score: 55.8 bits (133), Expect = 1.410e-7
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G GQV   +AA  L +SGL    L ++W++AD  R G LN Q++ IAL ++
Sbjct:   22 RQVDPSGSGQVAAADAALFLKRSGLADLVLGKIWDLADSERKGCLNKQQFFIALRLV 78
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A670Y198_PSETE (Calglandulin n=27 Tax=Serpentes TaxID=8570 RepID=A0A670Y198_PSETE)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP   G+V   +AA  L KSGLT   L +VW++AD N  G+LN QE+ +AL ++
Sbjct:   44 RQVDPTNSGRVLASDAAVFLKKSGLTDLILGKVWDLADTNGKGILNKQEFFVALRLV 100
[Close]
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Match: A0A8C2G250_CYPCA (Epidermal growth factor receptor pathway substrate 15 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2G250_CYPCA)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-7
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    4 RKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQEWAIALHII 174
            R+VDP G G+V   +AA  L +SGLT   L ++W++AD +R G LN Q++ +AL ++
Sbjct:   22 RQVDPSGSGRVGAADAALFLKRSGLTDLILGKIWDLADSDRKGSLNKQQFFVALRLV 78
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10424.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q1AGR0_AMPOC6.640e-843.86EH domain-containing protein n=2 Tax=Pomacentridae... [more]
A0A4W4EPU1_ELEEL7.700e-845.61Epidermal growth factor receptor pathway substrate... [more]
A0A4W4EMK6_ELEEL7.730e-845.61Epidermal growth factor receptor pathway substrate... [more]
A0A5J5EFM9_9PEZI7.750e-847.27Uncharacterized protein n=1 Tax=Sphaerosporella br... [more]
UPI0010FAA2D51.060e-747.37LOW QUALITY PROTEIN: epidermal growth factor recep... [more]
A0A0P7UXE9_SCLFO1.060e-747.37Uncharacterized protein (Fragment) n=2 Tax=Sclerop... [more]
A0A8C9RWV3_SCLFO1.060e-747.37Epidermal growth factor receptor pathway substrate... [more]
UPI001F083EB51.410e-745.61epidermal growth factor receptor substrate 15-like... [more]
A0A670Y198_PSETE1.440e-747.37Calglandulin n=27 Tax=Serpentes TaxID=8570 RepID=A... [more]
A0A8C2G250_CYPCA1.970e-743.86Epidermal growth factor receptor pathway substrate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10424contigC-tenellus_contig10424:1767..1946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LNH4
Preferred nameREPS2
PFAMsEF-hand_4
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K08292,ko:K20068
KEGG Pathwayko04152,ko04921,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005905,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0017124,GO:0019904,GO:0022607,GO:0023052,GO:0038127,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061024,GO:0065003,GO:0065007,GO:0071840,GO:0071944
Exons1
Evalue2.01e-12
EggNOG OGsKOG0998@1|root,KOG1955@1|root,KOG0998@2759|Eukaryota,KOG1955@2759|Eukaryota
EC2.7.11.20
Descriptioncalcium ion binding
Cds size180
COG categoryG
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.8463922-CDS-C-tenellus_contig10424:1766..19461680789130.8463922-CDS-C-tenellus_contig10424:1766..1946Choristocarpus tenellus KU2346CDSC-tenellus_contig10424 1767..1946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10424.1.1prot_C-tenellus_contig10424.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10424 1767..1946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10424.1.1

>prot_C-tenellus_contig10424.1.1 ID=prot_C-tenellus_contig10424.1.1|Name=mRNA_C-tenellus_contig10424.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
LRKVDPDGRGQVYGQEAARLLGKSGLTRSQLAQVWEMADQNRDGMLNSQE
WAIALHIIR*
back to top

mRNA from alignment at C-tenellus_contig10424:1767..1946-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10424.1.1 ID=mRNA_C-tenellus_contig10424.1.1|Name=mRNA_C-tenellus_contig10424.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=180bp|location=Sequence derived from alignment at C-tenellus_contig10424:1767..1946- (Choristocarpus tenellus KU2346)
CTCCGTAAGGTGGATCCAGATGGTAGGGGACAGGTGTACGGCCAAGAAGC
TGCCCGGCTACTGGGAAAAAGTGGACTTACCAGATCACAGCTTGCTCAAG
TGTGGGAAATGGCCGACCAGAATAGGGATGGGATGCTGAACTCACAAGAG
TGGGCAATAGCATTGCACATCATAAGGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10424:1767..1946-

>mRNA_C-tenellus_contig10424.1.1 ID=mRNA_C-tenellus_contig10424.1.1|Name=mRNA_C-tenellus_contig10424.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig10424:1767..1946- (Choristocarpus tenellus KU2346)
CTCCGTAAGGTGGATCCAGATGGTAGGGGACAGGTGTACGGCCAAGAAGC
TGCCCGGCTACTGGGAAAAAGTGGACTTACCAGATCACAGCTTGCTCAAG
TGTGGGAAATGGCCGACCAGAATAGGGATGGGATGCTGAACTCACAAGAG
TGGGCAATAGCATTGCACATCATAAGGTGA
back to top