mRNA_C-tenellus_contig10422.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10422.1.1
Unique NamemRNA_C-tenellus_contig10422.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.720e-13
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 HIGLFCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            ++  F PNY    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP +  FPD ++
Sbjct:  254 YLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLER 318
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BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.830e-13
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 HIGLFCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            ++  F PNY    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP +  FPD ++
Sbjct:  210 YLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLER 274
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BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.880e-13
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 HIGLFCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            ++  F PNY    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP +  FPD ++
Sbjct:  394 YLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLER 458
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.930e-13
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 HIGLFCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            ++  F PNY    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP +  FPD ++
Sbjct:  396 YLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLER 460
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.980e-13
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 HIGLFCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            ++  F PNY    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP +  FPD ++
Sbjct:  918 YLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLER 982
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5JZ05_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ05_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.280e-12
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 FCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPD 189
            F PN+    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP I  FPD
Sbjct:   43 FLPNFSLTAAPLTNILRNKAFASKRARKLPIPWPAAEEDAFQSLRETLASPNILAFPD 100
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.490e-12
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   16 FCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            F PNY    APLTNILRNK +ASKR RK  IPW   E+ AF+ L+  L SP +  FP+ ++
Sbjct:  513 FVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPNLER 573
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5K5Z9_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-10
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   22 PNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWDK 198
            PN     APLTNILRNK +ASKR RK  IPW   E  AF+ L+  L SP +  FPD ++
Sbjct:  159 PNCSLTAAPLTNILRNKAFASKRARKLPIPWSAAEDDAFQSLRETLASPKVIAFPDIER 217
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.630e-10
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   16 FCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWD 195
            F  ++  +VAPLT+ILRNK +++KR R  +IPWG E+  A + +   LVSPP+ + PDW+
Sbjct: 1059 FVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWE 1118
[Close]
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.590e-10
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   16 FCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELKVRLVSPPIQVFPDWD 195
            F  ++  +VAP+T+ILRNK +++K+ R K IPWG E+  AF  +   LVSPP+ V P+W+
Sbjct:  298 FVKDFSALVAPITDILRNKDFSTKQARHKPIPWGKEQDDAFAAIISALVSPPVLVPPNWE 357
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10422.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KIS6_9PHAE6.720e-1350.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Z4_9PHAE6.830e-1350.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV6_9PHAE6.880e-1350.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE6.930e-1350.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE6.980e-1350.77RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JZ05_9PHAE1.280e-1256.90RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5J659_9PHAE4.490e-1252.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5Z9_9PHAE1.200e-1052.54RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KHG6_9PHAE2.630e-1046.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K948_9PHAE3.590e-1046.67Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10422contigC-tenellus_contig10422:5307..5504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_004197-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Model size198
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.71e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
Cds size198
COG categoryOU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.6810207-CDS-C-tenellus_contig10422:5306..55041680789130.6810207-CDS-C-tenellus_contig10422:5306..5504Choristocarpus tenellus KU2346CDSC-tenellus_contig10422 5307..5504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10422.1.1prot_C-tenellus_contig10422.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10422 5307..5504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10422.1.1

>prot_C-tenellus_contig10422.1.1 ID=prot_C-tenellus_contig10422.1.1|Name=mRNA_C-tenellus_contig10422.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=66bp
LHIGLFCPNYGQVVAPLTNILRNKGYASKRDRKKSIPWGPEEQKAFEELK
VRLVSPPIQVFPDWDK
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mRNA from alignment at C-tenellus_contig10422:5307..5504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10422.1.1 ID=mRNA_C-tenellus_contig10422.1.1|Name=mRNA_C-tenellus_contig10422.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=198bp|location=Sequence derived from alignment at C-tenellus_contig10422:5307..5504+ (Choristocarpus tenellus KU2346)
TTGCATATAGGACTCTTCTGTCCGAACTACGGCCAAGTAGTTGCACCTCT
GACTAACATCCTTCGGAACAAAGGGTATGCCTCCAAAAGAGATAGGAAGA
AGAGTATTCCTTGGGGACCAGAGGAGCAGAAAGCCTTTGAAGAACTTAAG
GTGCGTCTGGTCTCCCCACCAATCCAAGTCTTTCCTGACTGGGATAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10422:5307..5504+

>mRNA_C-tenellus_contig10422.1.1 ID=mRNA_C-tenellus_contig10422.1.1|Name=mRNA_C-tenellus_contig10422.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=198bp|location=Sequence derived from alignment at C-tenellus_contig10422:5307..5504+ (Choristocarpus tenellus KU2346)
TTGCATATAGGACTCTTCTGTCCGAACTACGGCCAAGTAGTTGCACCTCT
GACTAACATCCTTCGGAACAAAGGGTATGCCTCCAAAAGAGATAGGAAGA
AGAGTATTCCTTGGGGACCAGAGGAGCAGAAAGCCTTTGAAGAACTTAAG
GTGCGTCTGGTCTCCCCACCAATCCAAGTCTTTCCTGACTGGGATAAG
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