mRNA_C-tenellus_contig10404.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.790e-46 Identity = 82/123 (66.67%), Postives = 102/123 (82.93%), Query Frame = 3 Query: 3 DKMFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSV---GTLQVVTVNHPSPASPSGSRWIEATCLNDLVLASSKAKEIDAFL 362 DKMFVYN+CPLTFM++SG NITPD+L P ERE++D+ACG+AL MISAL+PSVVVAVGNF+ KC +AV+ G + G ++VV VNHPSPASP+G +W +ATCLN+LVL SSK+KEID FL Sbjct: 194 DKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFL 316
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A6C1PQ48_9SPIO (Single-stranded DNA-binding protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1PQ48_9SPIO) HSP 1 Score: 90.9 bits (224), Expect = 2.400e-17 Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 3 Query: 12 FVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEEL-GTSVGTL-QVVTVNHPSPASPSGSRWIEATCLNDLVLASSKAK 344 FV NYCPL FM SG NITPD+L ER+ L AC +L + AL P VV VG F+ C++A L GTS GT+ +VV+V HPSPASP+ +R A LV A +K Sbjct: 144 FVANYCPLVFMAESGRNITPDKLPAAERQPLYAACDDSLRATVDALAPDTVVGVGRFA---CDRATAALAGTSAGTMPRVVSVLHPSPASPAANRGWAAAATRMLVDAGVWSK 253
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A3L7TFZ7_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7TFZ7_9BACT) HSP 1 Score: 90.5 bits (223), Expect = 3.120e-17 Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 3 Query: 6 KMFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEE--LGTSVGTLQVVTVNHPSPASPSGSRWIEATCLNDLVLASSKAK 344 +MFV+NYCPL F++ SG+NITPD+LA +ERE + C +AL ++ L P +V+ VG F+ +A+ + L V L+ + HPSPASP+ +R E +L S AK Sbjct: 136 RMFVWNYCPLAFVSASGANITPDKLARDEREAIQAPCHEALWKIVEVLRPRMVIGVGAFAHAVALQALTQRPLSNRVAPLEFAQILHPSPASPAANRGWEPIVRAELTRLSVLAK 250
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A3L7T1K8_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7T1K8_9BACT) HSP 1 Score: 89.7 bits (221), Expect = 4.510e-17 Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 3 Query: 3 DKMFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSVGTLQVVTVNHPSPASPSGSRWIEATCLNDLV 323 D++FV+NY PL F++ +G+NITPD+L +RE L+ C +ALV M L P +V+ VG F+R E+A++ T + + HPSPASP+ +R E DLV Sbjct: 126 DRIFVWNYAPLAFVSATGANITPDKLPRAQREALESPCNEALVAMTELLRPRLVIGVGAFARAAAERALK---TCAHRPEFAQILHPSPASPAANRGWEPQVRADLV 229
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A3L7TIR8_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7TIR8_9BACT) HSP 1 Score: 87.8 bits (216), Expect = 2.520e-16 Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 6 KMFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSVGTLQVVTVNHPSPASPSGSRWIEATCLNDLV 323 + FV+N+CPL F++ SG+NITPD+L ER L+ C ++L ++ AL+P V+V VG F+ +A+ E ++ V TV HPSPASP+ +R A LV Sbjct: 141 RAFVWNWCPLAFVSASGANITPDKLLAGERAALESICDRSLARIVKALQPKVIVGVGGFATLAARRALGE------SIDVRTVLHPSPASPAANRGWSAVARKQLV 240
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: UPI000CD7AA7F (single-strand selective monofunctional uracil DNA glycosylase isoform X3 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7AA7F) HSP 1 Score: 86.3 bits (212), Expect = 4.300e-16 Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 6 KMFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSV-GTLQVVTVNHPSPASPSGSRWIEAT 305 + FVYNYCPL FMT SG NITP L ER LL++ C KAL ++ L+ ++VA+G F+ + V GT + G +++ ++ HPSP + S W E T Sbjct: 77 QAFVYNYCPLAFMTNSGKNITPTELKASERRLLNEICDKALHDVLLLLQVEMIVAIGKFAEARANSVVT--GTELKGKIKIGSIPHPSPRNFSSKNWPEDT 175
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A2A2QJU9_9BACT (Single-stranded DNA-binding protein n=1 Tax=Verrucomicrobiae bacterium Tous-C5FEB TaxID=1982331 RepID=A0A2A2QJU9_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 7.370e-15 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 3 Query: 12 FVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSVGTLQVVTVNHPSPASPSGSR-WIEA 302 FV NYCPL +M+T+G+N+TPD+L E + ++QAC K L +I L+PS ++ VG F+ + +A G+ +V+ HPSPASP+ +R W EA Sbjct: 133 FVMNYCPLVWMSTTGANLTPDKLPASEMQPVEQACLKHLAKVIELLDPSYLIGVGGFAEDRLIRAAAACGSKATVGRVL---HPSPASPAANRGWAEA 227
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A4Q2X1G7_9BACT (Single-stranded DNA-binding protein (Fragment) n=2 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2X1G7_9BACT) HSP 1 Score: 82.4 bits (202), Expect = 1.140e-14 Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 3 Query: 12 FVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSVGTLQVVTVNHPSPASPSGSR-WIEA 302 FV NYCPL +M+++G+N+TPD+L+ E +++AC K L +I+ L+PS ++ VG F+ + +A E G+ ++ V HPSPASP+ +R W EA Sbjct: 103 FVLNYCPLVWMSSTGANLTPDKLSVSEMAPVEEACQKHLQEVIALLKPSWLIGVGGFAEERLRRAAETSGSKA---KIGRVLHPSPASPAANRGWAEA 197
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A2D7HXR0_9DELT (Single-stranded DNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7HXR0_9DELT) HSP 1 Score: 83.2 bits (204), Expect = 1.200e-14 Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 3 Query: 12 FVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSVGTLQVVTVNHPSPASPSGSR 290 FV NYCPL FM SG NITPD+L PEER L +AC + L+ + LEP+ V+ VG FS + E + G +G + HPSPA+P +R Sbjct: 136 FVANYCPLIFMEQSGRNITPDKLRPEERTPLFEACDRFLIRLNQILEPAWVIGVGRFSTLRAETVLGSQGPKIGQIL-----HPSPANPRANR 223
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Match: A0A2D9TGN5_9DELT (Single-stranded DNA-binding protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TGN5_9DELT) HSP 1 Score: 82.8 bits (203), Expect = 1.430e-14 Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 3 Query: 3 DKMFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSVVVAVGNFSRGKCEKAVEELGTSVGTLQVVTVNHPSPASPSGSR-WIE 299 ++ +V NYCPL FM S N P++L ER+ L AC +ALV +I AL+P +VV VG ++R + E A+ +LG +G V HPSPASP +R W E Sbjct: 133 ERFYVANYCPLVFMEESARNRVPEKLPVAERQPLLDACDEALVEVIEALQPELVVGVGAWARKRAEAALGDLGVRIGQ-----VLHPSPASPRANRGWQE 227 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10404.1.1 >prot_C-tenellus_contig10404.1.1 ID=prot_C-tenellus_contig10404.1.1|Name=mRNA_C-tenellus_contig10404.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=123bp MFVYNYCPLTFMTTSGSNITPDRLAPEERELLDQACGKALVGMISALEPSback to top mRNA from alignment at C-tenellus_contig10404:5..2877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10404.1.1 ID=mRNA_C-tenellus_contig10404.1.1|Name=mRNA_C-tenellus_contig10404.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2873bp|location=Sequence derived from alignment at C-tenellus_contig10404:5..2877+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10404:5..2877+ >mRNA_C-tenellus_contig10404.1.1 ID=mRNA_C-tenellus_contig10404.1.1|Name=mRNA_C-tenellus_contig10404.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=369bp|location=Sequence derived from alignment at C-tenellus_contig10404:5..2877+ (Choristocarpus tenellus KU2346)back to top |