mRNA_C-tenellus_contig10388.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10388.2.1
Unique NamemRNA_C-tenellus_contig10388.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.770e-61
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFADSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWVVP 327
            +SAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFA++ATQ PNRIGFDEFAAWYTEGG+RVSPWLELLDM KWVVP
Sbjct: 1100 KSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDMGKWVVP 1208          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.160e-60
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFADSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWVVP 327
            +SAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFA++ATQ PNRIGFDEFAAWYTEGG+RVSPWLELLD+ KWV P
Sbjct: 1112 KSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDIGKWVAP 1220          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A7S3XMH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH2_HETAK)

HSP 1 Score: 138 bits (348), Expect = 8.050e-39
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFADSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWV 321
            +S KLA+AF L DEDGD RL+RRGLWR+ R+FL+ LM++S  +SS+ A EL   +D+GAVWT+A IF        N+I F+E AAWYTEGGYR+SPWLELLD+ KW+
Sbjct:  104 KSGKLAYAFDLLDEDGDGRLSRRGLWRFLRAFLSVLMSMSSKASSMEASELVDLIDNGAVWTAATIFEQCDLAEKNKIDFEELAAWYTEGGYRLSPWLELLDLKKWL 210          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A6U1MRH8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRH8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.170e-36
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFADSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWVV 324
            +S KL++AF L DED D++L+RRGLWRY RSFLT LM  S A+S LS EEL  A+D GAV  +A I+ ++  +  N+I F+E AAWYT GGY  +PWLELLD+ KW+V
Sbjct:  137 KSTKLSYAFDLLDEDEDQKLSRRGLWRYLRSFLTVLMGASLANSGLSGEELVWAIDSGAVHAAAVIYQETEREEKNKISFEELAAWYTNGGYWFAPWLELLDLKKWLV 244          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A836CCD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.120e-32
Identity = 68/114 (59.65%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAD-SATQMPNRIGFDEFAAWYTEG-------GYRVSPWLELLDMDKW 318
            +S+KL +A+ L   D D  LTRRGLWRY RSFLT LMALS AS +L+A+ELTRAVDD AVW SA +FAD  A     RI F + A WYTEG       G+  SPWLELLDM KW
Sbjct:  157 KSSKLVYAWDLL-ADADGALTRRGLWRYMRSFLTVLMALSSASGTLTAKELTRAVDDSAVWVSARVFADLRAADAATRITFTDLADWYTEGLERSAAPGFMTSPWLELLDMSKW 269          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A7S3Y3W7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W7_HETAK)

HSP 1 Score: 111 bits (278), Expect = 5.670e-28
Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIF----------ADSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKW-VVP 327
            +S KLA+AF L DE     LTRRG+WR+ RS L+ L AL  +   +  EEL   VDDGAVWT+A  F          A    + PNR+ FD+ AAWYT GGY+V PWLELLD+ KW ++P
Sbjct:   55 KSVKLAYAFELLDEQSLGYLTRRGVWRFFRSILSMLAALCSSLLDVPTEELQARVDDGAVWTTARAFSYRGPPAAAAAPERERDPNRLSFDDLAAWYTGGGYQVCPWLELLDLRKWHLIP 174          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A7S0GD91_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD91_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.820e-28
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFA--------DSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWVV 324
            +S KL FAF L D+D D RL+RRGLW+Y RSFLT LM++S AS++++   +  A+D  + W +A +F         ++       + FD+FA WYT+GGY   PWLELLD+ KWV+
Sbjct:  130 KSDKLEFAFDLIDDDKDGRLSRRGLWKYLRSFLTVLMSISSASANMTEGHIYSAIDSASTWATAQVFGAEQDKGLGNNDNSSKRSVCFDDFAEWYTQGGYGSIPWLELLDLKKWVL 245          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A6U4G7P4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G7P4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.070e-24
Identity = 53/108 (49.07%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSS-LSAEELTRAVDDGAVWTSAAIFADSATQMPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWV 321
            +S KLAFAF + D  G   L+RR LWR+ R+FLTAL A SF S +     E   AVD  A+WT+  +F        NR  F++ A WY EGGY  +PWLELLD+ KWV
Sbjct:  169 KSTKLAFAFDVLDTKGKGALSRRSLWRFFRAFLTALCAFSFESGADRDPHETGVAVDAAAIWTATKVFEKKEVDRANRATFNDIAQWYGEGGYTKAPWLELLDLRKWV 276          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A1V9ZSX4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSX4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.760e-22
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFADSATQ----MPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWVV 324
            +SAKLAF FGL DED D  LTRR +W+Y RSFLT L+AL   +  LSA+ +    D   +  + +IF +SA+     M  ++ F EFA WY+E GY + PW+ELLD  KW V
Sbjct:  620 KSAKLAFCFGLFDEDADGYLTRREMWKYLRSFLTMLLALGNGAD-LSADTIGYICDAACISIAKSIFNESASGLDVVMKTKVCFAEFADWYSEKGYALIPWIELLDARKWPV 730          
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Match: A0A067CBJ2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBJ2_SAPPC)

HSP 1 Score: 96.7 bits (239), Expect = 6.910e-21
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFADSATQ----MPNRIGFDEFAAWYTEGGYRVSPWLELLDMDKWVV 324
            +S KLAF FGL DEDGD  LTRR +W++ RSFLT L+AL   +  LSA+ +    D   +  + +IF +S +     + +++ F EFA WY+E GY + PW+ELLD  KW +
Sbjct:  625 KSTKLAFCFGLFDEDGDGFLTRREMWKFLRSFLTMLLALGNGAD-LSADTIGYICDAACISIAKSIFNESMSGDDLVLRSKVAFAEFADWYSEKGYALIPWIELLDAKKWPI 735          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10388.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUX5_ECTSI1.770e-6194.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYX4_9PHAE2.160e-6092.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XMH2_HETAK8.050e-3959.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1MRH8_9STRA3.170e-3657.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CCD1_9STRA5.120e-3259.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y3W7_HETAK5.670e-2850.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0GD91_9STRA7.820e-2845.69Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A6U4G7P4_9STRA1.070e-2449.07Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZSX4_9STRA5.760e-2248.21Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CBJ2_SAPPC6.910e-2144.64Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10388contigC-tenellus_contig10388:4287..5516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FUX5
Model size357
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.9e-62
EggNOG OGs2CU92@1|root,2RK0N@2759|Eukaryota
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789129.254976-CDS-C-tenellus_contig10388:4286..43861680789129.254976-CDS-C-tenellus_contig10388:4286..4386Choristocarpus tenellus KU2346CDSC-tenellus_contig10388 4287..4386 -
1680789129.2702568-CDS-C-tenellus_contig10388:5259..55161680789129.2702568-CDS-C-tenellus_contig10388:5259..5516Choristocarpus tenellus KU2346CDSC-tenellus_contig10388 5260..5516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10388.2.1prot_C-tenellus_contig10388.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10388 4287..5516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10388.2.1

>prot_C-tenellus_contig10388.2.1 ID=prot_C-tenellus_contig10388.2.1|Name=mRNA_C-tenellus_contig10388.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=119bp
QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEE
LTRAVDDGAVWTSAAIFADSATQMPNRIGFDEFAAWYTEGGYRVSPWLEL
LDMDKWVVPGGSGGDPSE*
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mRNA from alignment at C-tenellus_contig10388:4287..5516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10388.2.1 ID=mRNA_C-tenellus_contig10388.2.1|Name=mRNA_C-tenellus_contig10388.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1230bp|location=Sequence derived from alignment at C-tenellus_contig10388:4287..5516- (Choristocarpus tenellus KU2346)
CAGTCGGCCAAGCTGGCGTTTGCCTTTGGGCTTCACGATGAGGACGGTGA TGAGCGTCTCACAAGACGTGGGCTGTGGCGCTACACGAGGTCGTTTCTTA CTGCCCTCATGGCCCTCAGCTTTGCCAGTTCCAGCCTCTCTGCAGAAGAG CTTACAAGGGCTGTGGATGATGGGGCAGTGTGGACTAGCGCAGCCATTTT TGCCGACAGTGCTACTCAGATGCCCAATCGCATTGGATTCGATGAGTTTG CTGCTTGGTGAGGATGAAGAAGATGGGGGAGGGGGCAAGGGGGGCCAGTG CAGTATTATTTTATTTTTGTGTGTGTGTGTGTGTGTATTTTGGCTGTGAG TCTCTGCCCTCTTGTTGATTTCATTCTGCTCGCCTTCCTTGGGGAGAGGT GTCCCCTGTGTGTGTTGGGTGTGGAAGCAGAGCGCATTTTGGTCGGCACC CTGGTGATGCTTGCAAGGCTTGTCCCAATTGATCCGTGGTTTTCTACTGT GTTTTCATCTTTTCTTTTTTTTCTACTGTGTTGATTTGGACTGGAATTGG GCTTGCAGGCTTTGAGTAGTTGACCATCACTCAACTGATAACACCCATCC GAGTGAGGTTGTTGGTACGAGAACATGAAGGTTAACTACCTCTTCAGTAA AGAGGCCCCCTTAACCCGCCCACCTACCCCTGCCACCTAGAAAATTTGAT GTATGGTGTGTTATCTTCTTGGCATGTTCCTGATGATGCTTCTTGACATG ATAGTTGATGCTGAGACTTTTGTATTGTTACTACTACTCCTACGATCGAT GTTCATGAGATGCTGTTTGTTTAAAAAAAAAAATTATGTTAGGTCGGAAG TATTTAGTATTAGTATTATAGTGTTATGGTAAGATTCAACCCTTGTTGGG GGCGTATCGTATTATAGTGTTAGGGCAGATCTTTAAGCCATCACCGGTAT GGATGGGACTTGACTTGACTGTTGGCCTTTTTGGTATCCTACCCTCTTTC CCTTGGTTATGTCGTGTGACAGTATAAGTCAGGACTTGTTTTCTTGTTTT TATGTGTGTTGTTATCCCATGTTAGCCTTCTGATCCAAGCGTGTATGTGT TTGTGTGTATGTTTGTCTATCTTCATCCAGGTACACTGAAGGGGGCTACC GTGTGAGCCCTTGGTTAGAGTTGCTTGACATGGACAAGTGGGTTGTGCCT GGAGGCAGTGGGGGGGACCCAAGTGAATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10388:4287..5516-

>mRNA_C-tenellus_contig10388.2.1 ID=mRNA_C-tenellus_contig10388.2.1|Name=mRNA_C-tenellus_contig10388.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=357bp|location=Sequence derived from alignment at C-tenellus_contig10388:4287..5516- (Choristocarpus tenellus KU2346)
CAGTCGGCCAAGCTGGCGTTTGCCTTTGGGCTTCACGATGAGGACGGTGA
TGAGCGTCTCACAAGACGTGGGCTGTGGCGCTACACGAGGTCGTTTCTTA
CTGCCCTCATGGCCCTCAGCTTTGCCAGTTCCAGCCTCTCTGCAGAAGAG
CTTACAAGGGCTGTGGATGATGGGGCAGTGTGGACTAGCGCAGCCATTTT
TGCCGACAGTGCTACTCAGATGCCCAATCGCATTGGATTCGATGAGTTTG
CTGCTTGGTACACTGAAGGGGGCTACCGTGTGAGCCCTTGGTTAGAGTTG
CTTGACATGGACAAGTGGGTTGTGCCTGGAGGCAGTGGGGGGGACCCAAG
TGAATGA
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