mRNA_C-tenellus_contig10380.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10380.2.1
Unique NamemRNA_C-tenellus_contig10380.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10380.2.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.160e-10
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   10 FNPSPKVERELEMLIKTMYHKSFIDLVDKSK--LEDLLNPIIFSYHHLGLWCAVRHGVI-CGEQTIRGRFNHHQRDRKRIRRAKKMIRALLEHLKESMLG 300
            F PS  V  ELE L++ ++ +S     D  +  +E ++ P++FSY HLGLWCA+RH V+ C  + +         DR RI R KK++  L +HL ES LG
Sbjct:   51 FTPSQTVVDELESLMRMLFSESMCGFGDSKEKFVEAVVGPVLFSYQHLGLWCAIRHIVMFCEAENLP--------DRSRITRTKKVVLQLTQHLTESPLG 142
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BLAST of mRNA_C-tenellus_contig10380.2.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.100e-5
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:  106 EDLLNPIIFSYHHLGLWCAVRHGVICGEQTIRGRFNHHQRDRKRIRRAKKMIRALLEHLKESMLG 300
            E ++ P++FSY HLGLWCA+RH  +               DR RI R KK++  L +HL ES LG
Sbjct:  209 EAVVGPVLFSYQHLGLWCAMRHIRVAENLP----------DRSRITRTKKVVLQLTQHLTESPLG 263
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10380.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE1.160e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI5.100e-543.08Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10380contigC-tenellus_contig10380:2272..5525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZW2
PFAMsDEAD,Dicer_dimer,Helicase_C
Model size592
Max annot lvl2759|Eukaryota
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.36e-06
EggNOG OGsCOG0571@1|root,KOG0701@2759|Eukaryota
Descriptionribonuclease III activity
Cds size591
COG categoryK
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789128.7527282-CDS-C-tenellus_contig10380:2271..23671680789128.7527282-CDS-C-tenellus_contig10380:2271..2367Choristocarpus tenellus KU2346CDSC-tenellus_contig10380 2272..2367 +
1680789128.7638023-CDS-C-tenellus_contig10380:3146..32401680789128.7638023-CDS-C-tenellus_contig10380:3146..3240Choristocarpus tenellus KU2346CDSC-tenellus_contig10380 3147..3240 +
1680789128.7734535-CDS-C-tenellus_contig10380:4449..45141680789128.7734535-CDS-C-tenellus_contig10380:4449..4514Choristocarpus tenellus KU2346CDSC-tenellus_contig10380 4450..4514 +
1680789128.790528-CDS-C-tenellus_contig10380:5189..55251680789128.790528-CDS-C-tenellus_contig10380:5189..5525Choristocarpus tenellus KU2346CDSC-tenellus_contig10380 5190..5525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10380.2.1prot_C-tenellus_contig10380.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10380 2272..5525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10380.2.1

>prot_C-tenellus_contig10380.2.1 ID=prot_C-tenellus_contig10380.2.1|Name=mRNA_C-tenellus_contig10380.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=197bp
MQSFNPSPKVERELEMLIKTMYHKSFIDLVDKSKLEDLLNPIIFSYHHLG
LWCAVRHGVICGEQTIRGRFNHHQRDRKRIRRAKKMIRALLEHLKESMLG
RVDGNAGFVLDDDESANANPQNEGNVDGMELNGEETGCRDDGSIDGNDGN
DGSGSDHHDSDGHSGGDRNEPRRSDGDGRSRGGTKRKLDAEFLANEG
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mRNA from alignment at C-tenellus_contig10380:2272..5525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10380.2.1 ID=mRNA_C-tenellus_contig10380.2.1|Name=mRNA_C-tenellus_contig10380.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3254bp|location=Sequence derived from alignment at C-tenellus_contig10380:2272..5525+ (Choristocarpus tenellus KU2346)
ATGCAGTCGTTTAATCCCAGTCCCAAGGTGGAGCGGGAGCTGGAGATGCT
GATCAAGACTATGTACCACAAGTCATTCATTGACTTGGTAGATAAGGTGA
ACCATCCTTTGCAGTTGATAGTGTGAGCGGCTTTATTTGCCTGGGGTCTT
CCCTGTGAAAATTGCGCTTTTTGTTGGTTGTCAAGGGATTTTGGGTTGCA
GGACCACCTCTCAGGTTGACTTGGATTGTCTCCTCTTGGCCCTTGTTGTC
GTGTTTGCCGTTACAACTTGCATTGATGGGACCATCTGAGTCCTCTGTGG
TAGAAGTAACAACGCGTAGTGTGTTGTAGTGTGTTGTAGTCTGGTGTGCC
TCTAGCTTCGAAAGTCATAGACCTAACAGAAAAAATGGAGCAAGGCTGGG
TGTTGGAGCAGATGATTTGACCCCTTGCATCATAACTGTAATCCTGATTA
TATTTTGGGATAGGGCAGGTCAATTTATTTGATCATTCAATATCTGATCT
GTGATAGGGTGTTGGTAGGATGTGCAAGACTTGGATAGTTATTGTTAGAG
ATCCCCCGCCCCCCTCCCACCCCTCTGCTTCCTTCTTCTGCAGCAATCAC
GGTGTCTGTCTCCTGTTTGCCTTTTTTTCCTTCGGCCTGCCTCTCCTCTT
TCTCTTGCTTCCATCTTTGTGTCTGTTTCCTGATTAAGTCTTTTCCTACT
CCCCCTCCCCCTGTCCCCCCTTCATCTAGTTCCATGCTTCTTTGGTTTTG
CTCTCTCTCTCTACTCCTCCCTGTCTTGCAGTCCTTGTTTCCCCCCACGG
ATATTTGTTAACCTTTTTTCATCTTTTCTTGGTCTTTGCCCTTTATGCTG
CACCACCTTTTTTTGATGCGCTAAGAGTAAGCTTGAGGACCTGTTAAATC
CAATCATCTTTTCCTATCACCATCTGGGCCTGTGGTGTGCTGTTCGACAT
GGAGTCATCTGTGGAGAACGTGAGGCTCATTTTATGGTATATTGTTTTTA
TTGCTATATTGTTTTTACTGCCTCTTGCGGCTACTACTTGTAGCACCTTT
GGCATGGTGGAAAAAACCCCCTGCCGTTTTGAGAAATATGATGACATGAT
GATGTCAAGAGAGTTGTGGATTGTTGCATTGTAAAAACTGACTGAATCGA
TTTGTTGCTCCCCTAAGACCTAGGGTGTATGATTTGTATCAAGTATATGC
TTTCTTTGGATGCATCCGCAAAGTTTTTCTCCTGCTCTGGGATGCTTGTT
TGGCCTTGTTGACGTGGATATTTAGCATGCATTGCCTTGCCTGCCCGTCC
TGACTATTGAGCCAAAACACACATCATGGTGTTGAAAGGGGCTTGTTGTA
GGCTGAAATGGAATGAGGTTGGAAATGAAGTCCCAAATTATGGGGGTACC
TGCTACTTTAGGTTCAATCCAGTGAACTGTTGGGCTGGTCTTGTGAACCT
AATGTTTGTGTAAGAGAGCTCTCCTCATAACATTGAAGTCATCCTCATGC
ATCGTTTCCTAGCAAAAACTCTTGTTGTCACAGGGGATGTGTGGTCTCAA
CACGACAAACCCATATTTGATATTTGATGTAGAAAAAACACTGATTGCAC
CTTACTCAAAACACAGGCCATCTGATAATTTGTTGCAGATCCTGAAGGCA
GTATTAGAACACGGCTCTGATAGTGTAACTGAACTCCTGTTTTTTTTAAG
AGAAATATTTTGATGTGCTGGGCTCTTCAGGGTGATATTTGAAGGAGGTG
GAACTGGTGATTGAAAGGCACATCTAAATACCTGCCCCCTTTCCTAGGGT
TAGTGTTAGTGTTGGTGCTGGATTATGCAACTTTTATGAGTACAGTAGTT
ATCAGGAAAGTTTTGAAAAGCTGAGTTTGAGGGGCCAAATTGACTGCCTT
GTGTTCTATGTATTTTGAACACTGTGGAGGGTGCTTTCAGGTAACAATGT
GCTCACAACTAATCTTTTGCAATTTAGGAATGGGCACGGTGTATGATGCC
CAAGGTTGTAGAAGATTTTCAAATTGAAAAGGGCCAAAATCAAACCTTGC
CTTTGATAGTTTCACCCCTTTGTGGCATATCGTTGGTATATATGTAACGA
CCATCATCACAAGCTTCCTTCCCGCCTTTGTTGTTTGCTTCGGTTCCACA
TTCAACACTCCACTTCAATTTTTTGAAGAGACCATCAGAGGGCGCTTTAA
TCACCACCAGAGGGACAGGAAGAGGATTCGACGGGCCAAAAAGGTGAAAA
ATGTAATGCCAGGATTGCTGCTTTCACCAATGGAAGAGTGTGTATTGTGC
ATTGAGCGAATAGGATGCCTTTGCTTTGTTTCTATTCCTACCTCCTACTA
TTTGACATCATTCACAGCAGTGTAGATGTGGTGAAGTTTGTGCACACATT
CCACAGAGGTGCATTTTCCATTCACAAGCATGTTGAACACGATTGTTCAG
TATACGCAATCAGTGGACGCAGCACCTATACCCTTACGAGACTTTTCTGT
GATCCATGTGTAACAAACAACATTGCACCAGATAAGGTGTACCATTTCAG
CCCCCCCACAGTTGTAAAAAAGTTGACTCAATGTCACATACTATGTTTAT
GCAACATTAGTGGAATAAAGACTGCGCTCGAACACAATGTACTACTCAAC
CTAGGCTTGTGTTCATTACACACACACACACACACACACACACACACACA
CACACATGTTAAAACATGCACACCACAGCACACTGTATGAAGTATTTGTA
AATACACTTATCAGCATAAGTAGGGAATAGAATGTAAGGGATTGTATACA
GCACATGAGCACAGTTTGTTCTGGTAAACGTATTATAGTTCATGTATAGA
TGTATTACAGTCCGATGCACTCCATCCAACTCACATTGTTGTGCCACAAT
GTAACACAATGCACACAGATGATCAGGGCTCTCTTGGAACACCTGAAAGA
AAGCATGCTGGGTCGTGTGGACGGCAATGCAGGCTTTGTACTTGATGATG
ATGAGAGCGCCAATGCTAACCCCCAAAATGAAGGCAATGTTGATGGCATG
GAATTGAACGGGGAAGAAACTGGTTGCAGGGATGACGGTAGCATTGATGG
CAACGATGGAAATGATGGCTCTGGTAGTGACCATCATGACAGTGATGGCC
ACAGTGGCGGTGATAGAAACGAACCCAGACGTAGTGATGGTGATGGTAGG
AGCCGGGGAGGGACCAAGAGGAAACTGGATGCTGAGTTCTTGGCTAATGA
AGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10380:2272..5525+

>mRNA_C-tenellus_contig10380.2.1 ID=mRNA_C-tenellus_contig10380.2.1|Name=mRNA_C-tenellus_contig10380.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=591bp|location=Sequence derived from alignment at C-tenellus_contig10380:2272..5525+ (Choristocarpus tenellus KU2346)
ATGCAGTCGTTTAATCCCAGTCCCAAGGTGGAGCGGGAGCTGGAGATGCT
GATCAAGACTATGTACCACAAGTCATTCATTGACTTGGTAGATAAGAGTA
AGCTTGAGGACCTGTTAAATCCAATCATCTTTTCCTATCACCATCTGGGC
CTGTGGTGTGCTGTTCGACATGGAGTCATCTGTGGAGAACAGACCATCAG
AGGGCGCTTTAATCACCACCAGAGGGACAGGAAGAGGATTCGACGGGCCA
AAAAGATGATCAGGGCTCTCTTGGAACACCTGAAAGAAAGCATGCTGGGT
CGTGTGGACGGCAATGCAGGCTTTGTACTTGATGATGATGAGAGCGCCAA
TGCTAACCCCCAAAATGAAGGCAATGTTGATGGCATGGAATTGAACGGGG
AAGAAACTGGTTGCAGGGATGACGGTAGCATTGATGGCAACGATGGAAAT
GATGGCTCTGGTAGTGACCATCATGACAGTGATGGCCACAGTGGCGGTGA
TAGAAACGAACCCAGACGTAGTGATGGTGATGGTAGGAGCCGGGGAGGGA
CCAAGAGGAAACTGGATGCTGAGTTCTTGGCTAATGAAGGG
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