mRNA_C-tenellus_contig10369.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10369.3.1
Unique NamemRNA_C-tenellus_contig10369.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: F0XYK3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYK3_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 6.310e-25
Identity = 54/96 (56.25%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288
            CN   VSHF AFFI+ GAKTS  +    +    I NDP AGSPTETLL LHLPLN E            L     E S  HSIGRCDGRCVQRAGT
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFRLIKISNDPSAGSPTETLLRLHLPLNSE------------LANPSPEVSPNHSIGRCDGRCVQRAGT 84          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: F0XYG7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYG7_AURAN)

HSP 1 Score: 95.1 bits (235), Expect = 1.040e-23
Identity = 53/96 (55.21%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288
            CN   VSHF AFFI+ GAKTS  +           NDP AGSPTETLL LHLPLN E            L     E S  HSIGRCDGRCVQRAGT
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKKYTEVRGTNKSNDPSAGSPTETLLRLHLPLNSE------------LANPSPEVSPNHSIGRCDGRCVQRAGT 84          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A8J2WSX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSX8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.230e-23
Identity = 54/102 (52.94%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRT------IGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288
            CN   VSHF AFFI+ GAKTS  +    +S  +       GNDP AGSPTETLL LHLPLN E+  ++             E S  HSIGRCDGRCVQRAGT
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFSLLSKPEDGYYGNDPSAGSPTETLLRLHLPLNSELACSN------------PEISPNHSIGRCDGRCVQRAGT 90          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: R1BK99_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BK99_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 3.810e-19
Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQP-YSHRTI-----GNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288
            CN   VSHF AFFI+A AK S+       Y   ++     GNDP AGSPTETL  L LPLN +V+  S G     L +    +S  HSIGR DGRCVQRAGT
Sbjct:    1 CNSHYVSHFAAFFIVARAKISIGRSCGTGYGATSVWVGKTGNDPSAGSPTETLSRLLLPLNDKVRTASRG-----LRRRSPGASPDHSIGRSDGRCVQRAGT 97          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: M2Q0E7_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2Q0E7_CERS8)

HSP 1 Score: 82.4 bits (202), Expect = 1.760e-18
Identity = 50/102 (49.02%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSV------AEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288
            CN   +SHF AFFI+A  K S+      A  I+P+      NDP AGSPTETLL L LPLN +V  T   + +    +   + SL HSIG  DGRCVQRAGT
Sbjct:    6 CNSHYLSHFAAFFIVARTKRSIGRMIINALKIEPFI-----NDPSAGSPTETLLRLLLPLNDQVCPTFQRLNSVARKKANPKDSLSHSIGSSDGRCVQRAGT 102          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: Q7RFP9_PLAYO (Uncharacterized protein n=1 Tax=Plasmodium yoelii yoelii TaxID=73239 RepID=Q7RFP9_PLAYO)

HSP 1 Score: 73.6 bits (179), Expect = 4.980e-15
Identity = 46/96 (47.92%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288
            CN   +SHF A FI  G KTS+ +    +      NDP AGSPTETLL L LPL   +   S  +    L    + SS   SIGR DGRCVQRAGT
Sbjct:    6 CNFHCLSHFAAAFIAVGTKTSIVKIYTIFKSYN-NNDPSAGSPTETLLRLLLPLKDRIYGPSKKIKIKFLFSCPNNSSYL-SIGRSDGRCVQRAGT 99          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: F0YAU5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAU5_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-14
Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEV 174
            CN   VSHF AFFI+ GAKTS  +    +    I NDP AGSPTETLL LHLPLN EV
Sbjct:    1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFRLIKISNDPSAGSPTETLLRLHLPLNSEV 58          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A6A5KWQ8_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KWQ8_LUPAL)

HSP 1 Score: 71.6 bits (174), Expect = 1.650e-12
Identity = 41/82 (50.00%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRT------------------------IGNDPFAGSPTETLL*LHLPLNIEV 174
            CN QDVSHF AFFI+ GAKTSVAE  +   H+T                         GNDP AGSPTETLL LHLPL+ E+
Sbjct:  291 CNSQDVSHFAAFFIVIGAKTSVAESAEASLHQTETKVPRVNISPSSCESETSVFCFGCGNDPSAGSPTETLLRLHLPLDDEI 372          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A6N2KUQ4_SALVM (Uncharacterized protein (Fragment) n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KUQ4_SALVM)

HSP 1 Score: 71.2 bits (173), Expect = 2.330e-12
Identity = 44/74 (59.46%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   73 PIQPYSHRT-IGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKL-LQHGSESSLKHSIGRCDGRCVQRAGT 288
            P  P  H T   NDP AGSPTETLL L LPLN +VQ TS  VA+ +      SE    HSIGR DGRCVQRAGT
Sbjct:  979 PPSPACHATGFDNDPSAGSPTETLLRLLLPLNDKVQWTSRDVASGEPPTSPRSEHFTGHSIGRSDGRCVQRAGT 1052          
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A507BW73_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BW73_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 2.410e-12
Identity = 40/67 (59.70%), Postives = 41/67 (61.19%), Query Frame = -2
Query:   87 VPALCTHRPSHLPIECFSEDSEPCCRSFAAATPWEVI*TSIFRGR*SYNKVSVGEPAKGSLPIVLWL 287
            VPALCTHRPS LPIE  SE S      F A    EV  T  FRG  S NKV+VGEPA GSL I  WL
Sbjct:   32 VPALCTHRPSLLPIEWLSETSGLSYWCFTALVFREVGQTWSFRGSKSRNKVTVGEPAVGSLHITDWL 98          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0XYK3_AURAN6.310e-2556.25Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0XYG7_AURAN1.040e-2355.21Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2WSX8_9STRA1.230e-2352.94Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
R1BK99_EMIHU3.810e-1950.98Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
M2Q0E7_CERS81.760e-1849.02Uncharacterized protein n=1 Tax=Ceriporiopsis subv... [more]
Q7RFP9_PLAYO4.980e-1547.92Uncharacterized protein n=1 Tax=Plasmodium yoelii ... [more]
F0YAU5_AURAN1.420e-1462.07Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6A5KWQ8_LUPAL1.650e-1250.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6N2KUQ4_SALVM2.330e-1259.46Uncharacterized protein (Fragment) n=1 Tax=Salix v... [more]
A0A507BW73_9FUNG2.410e-1259.70Uncharacterized protein n=1 Tax=Synchytrium microb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10369contigC-tenellus_contig10369:653..1323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009033216.1
Model size288
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.05e-10
EggNOG OGs2CZCW@1|root,2S9RN@2759|Eukaryota
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.9658008-UTR-C-tenellus_contig10369:652..7931680789127.9658008-UTR-C-tenellus_contig10369:652..793Choristocarpus tenellus KU2346UTRC-tenellus_contig10369 653..793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.9765313-CDS-C-tenellus_contig10369:793..8671680789127.9765313-CDS-C-tenellus_contig10369:793..867Choristocarpus tenellus KU2346CDSC-tenellus_contig10369 794..867 -
1680789127.9883873-CDS-C-tenellus_contig10369:1250..13231680789127.9883873-CDS-C-tenellus_contig10369:1250..1323Choristocarpus tenellus KU2346CDSC-tenellus_contig10369 1251..1323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10369.3.1prot_C-tenellus_contig10369.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10369 794..1323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10369.3.1

>prot_C-tenellus_contig10369.3.1 ID=prot_C-tenellus_contig10369.3.1|Name=mRNA_C-tenellus_contig10369.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*
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mRNA from alignment at C-tenellus_contig10369:653..1323-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10369.3.1 ID=mRNA_C-tenellus_contig10369.3.1|Name=mRNA_C-tenellus_contig10369.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=671bp|location=Sequence derived from alignment at C-tenellus_contig10369:653..1323- (Choristocarpus tenellus KU2346)
TGCAATTTGCAAGACGTATCGCATTTCACCGCATTCTTCATTATTGCGGG AGCCAAGACATCCGTCGCTGAACGTTTTGCACAAACCTCTACTCACGCTC GCCACCTCTCCTACCCACCCTCCCTCCTTCTCCCCCCCGCCGTTTACCAG CTGACTACAAATCCAAAACGGCGGAAAGGGGTAGGGATAGACACAGGCCA AGACGTAGGTGGCTGCACAACACCTCAGACTCCCACGTAGCCCGGCTGAG AGTAGATAGGGGGGGCGTGTTTTTGATTCAACCGTGCCCGCAACAAAGCA GACGTCGCCTGCGAGGCACTACCCACCCCTTGCATCGATTCGCAATATTT CGAGCAGCAGAAGAACGATCGACGGCGAGAGCCCAAGGAAAAAAACCATC CCTCACCTCGCCCAAACTGTCCCTCCCTACACAATCTTTACAATACAGCT CTACAGCCATTCAGCCATACAGCCATAGAACGATCGGTAATGATCCTTTC GCAGGTTCACCTACGGAAACCTTGTTATAGCTTCACCTTCCTCTAAATAT TGAAGTTCAGATAACTTCCCACGGTGTGGCAGCAGCGAAGCTCCTGCAAC ACGGTTCAGAATCTTCACTGAAACATTCAATCGGTAGGTGTGATGGGCGG TGTGTACAAAGGGCAGGGACG
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Coding sequence (CDS) from alignment at C-tenellus_contig10369:653..1323-

>mRNA_C-tenellus_contig10369.3.1 ID=mRNA_C-tenellus_contig10369.3.1|Name=mRNA_C-tenellus_contig10369.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10369:653..1323- (Choristocarpus tenellus KU2346)
TGCAATTTGCAAGACGTATCGCATTTCACCGCATTCTTCATTATTGCGGG
AGCCAAGACATCCGTCGCTGAACCCATTCAGCCATACAGCCATAGAACGA
TCGGTAATGATCCTTTCGCAGGTTCACCTACGGAAACCTTGTTATAG
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