mRNA_C-tenellus_contig10369.3.1 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: F0XYK3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYK3_AURAN) HSP 1 Score: 98.2 bits (243), Expect = 6.310e-25 Identity = 54/96 (56.25%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288 CN VSHF AFFI+ GAKTS + + I NDP AGSPTETLL LHLPLN E L E S HSIGRCDGRCVQRAGT Sbjct: 1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFRLIKISNDPSAGSPTETLLRLHLPLNSE------------LANPSPEVSPNHSIGRCDGRCVQRAGT 84
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: F0XYG7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYG7_AURAN) HSP 1 Score: 95.1 bits (235), Expect = 1.040e-23 Identity = 53/96 (55.21%), Postives = 55/96 (57.29%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288 CN VSHF AFFI+ GAKTS + NDP AGSPTETLL LHLPLN E L E S HSIGRCDGRCVQRAGT Sbjct: 1 CNSHYVSHFAAFFIVVGAKTSAGKKYTEVRGTNKSNDPSAGSPTETLLRLHLPLNSE------------LANPSPEVSPNHSIGRCDGRCVQRAGT 84
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A8J2WSX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSX8_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.230e-23 Identity = 54/102 (52.94%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRT------IGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288 CN VSHF AFFI+ GAKTS + +S + GNDP AGSPTETLL LHLPLN E+ ++ E S HSIGRCDGRCVQRAGT Sbjct: 1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFSLLSKPEDGYYGNDPSAGSPTETLLRLHLPLNSELACSN------------PEISPNHSIGRCDGRCVQRAGT 90
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: R1BK99_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BK99_EMIHU) HSP 1 Score: 84.0 bits (206), Expect = 3.810e-19 Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQP-YSHRTI-----GNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288 CN VSHF AFFI+A AK S+ Y ++ GNDP AGSPTETL L LPLN +V+ S G L + +S HSIGR DGRCVQRAGT Sbjct: 1 CNSHYVSHFAAFFIVARAKISIGRSCGTGYGATSVWVGKTGNDPSAGSPTETLSRLLLPLNDKVRTASRG-----LRRRSPGASPDHSIGRSDGRCVQRAGT 97
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: M2Q0E7_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2Q0E7_CERS8) HSP 1 Score: 82.4 bits (202), Expect = 1.760e-18 Identity = 50/102 (49.02%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSV------AEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288 CN +SHF AFFI+A K S+ A I+P+ NDP AGSPTETLL L LPLN +V T + + + + SL HSIG DGRCVQRAGT Sbjct: 6 CNSHYLSHFAAFFIVARTKRSIGRMIINALKIEPFI-----NDPSAGSPTETLLRLLLPLNDQVCPTFQRLNSVARKKANPKDSLSHSIGSSDGRCVQRAGT 102
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: Q7RFP9_PLAYO (Uncharacterized protein n=1 Tax=Plasmodium yoelii yoelii TaxID=73239 RepID=Q7RFP9_PLAYO) HSP 1 Score: 73.6 bits (179), Expect = 4.980e-15 Identity = 46/96 (47.92%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKLLQHGSESSLKHSIGRCDGRCVQRAGT 288 CN +SHF A FI G KTS+ + + NDP AGSPTETLL L LPL + S + L + SS SIGR DGRCVQRAGT Sbjct: 6 CNFHCLSHFAAAFIAVGTKTSIVKIYTIFKSYN-NNDPSAGSPTETLLRLLLPLKDRIYGPSKKIKIKFLFSCPNNSSYL-SIGRSDGRCVQRAGT 99
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: F0YAU5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAU5_AURAN) HSP 1 Score: 71.2 bits (173), Expect = 1.420e-14 Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*LHLPLNIEV 174 CN VSHF AFFI+ GAKTS + + I NDP AGSPTETLL LHLPLN EV Sbjct: 1 CNSHYVSHFAAFFIVVGAKTSAGKSCMAFRLIKISNDPSAGSPTETLLRLHLPLNSEV 58
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A6A5KWQ8_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KWQ8_LUPAL) HSP 1 Score: 71.6 bits (174), Expect = 1.650e-12 Identity = 41/82 (50.00%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 1 CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRT------------------------IGNDPFAGSPTETLL*LHLPLNIEV 174 CN QDVSHF AFFI+ GAKTSVAE + H+T GNDP AGSPTETLL LHLPL+ E+ Sbjct: 291 CNSQDVSHFAAFFIVIGAKTSVAESAEASLHQTETKVPRVNISPSSCESETSVFCFGCGNDPSAGSPTETLLRLHLPLDDEI 372
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A6N2KUQ4_SALVM (Uncharacterized protein (Fragment) n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KUQ4_SALVM) HSP 1 Score: 71.2 bits (173), Expect = 2.330e-12 Identity = 44/74 (59.46%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 73 PIQPYSHRT-IGNDPFAGSPTETLL*LHLPLNIEVQITSHGVAAAKL-LQHGSESSLKHSIGRCDGRCVQRAGT 288 P P H T NDP AGSPTETLL L LPLN +VQ TS VA+ + SE HSIGR DGRCVQRAGT Sbjct: 979 PPSPACHATGFDNDPSAGSPTETLLRLLLPLNDKVQWTSRDVASGEPPTSPRSEHFTGHSIGRSDGRCVQRAGT 1052
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Match: A0A507BW73_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BW73_9FUNG) HSP 1 Score: 67.0 bits (162), Expect = 2.410e-12 Identity = 40/67 (59.70%), Postives = 41/67 (61.19%), Query Frame = -2 Query: 87 VPALCTHRPSHLPIECFSEDSEPCCRSFAAATPWEVI*TSIFRGR*SYNKVSVGEPAKGSLPIVLWL 287 VPALCTHRPS LPIE SE S F A EV T FRG S NKV+VGEPA GSL I WL Sbjct: 32 VPALCTHRPSLLPIEWLSETSGLSYWCFTALVFREVGQTWSFRGSKSRNKVTVGEPAVGSLHITDWL 98 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10369.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10369.3.1 >prot_C-tenellus_contig10369.3.1 ID=prot_C-tenellus_contig10369.3.1|Name=mRNA_C-tenellus_contig10369.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp CNLQDVSHFTAFFIIAGAKTSVAEPIQPYSHRTIGNDPFAGSPTETLL*back to top mRNA from alignment at C-tenellus_contig10369:653..1323- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10369.3.1 ID=mRNA_C-tenellus_contig10369.3.1|Name=mRNA_C-tenellus_contig10369.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=671bp|location=Sequence derived from alignment at C-tenellus_contig10369:653..1323- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10369:653..1323- >mRNA_C-tenellus_contig10369.3.1 ID=mRNA_C-tenellus_contig10369.3.1|Name=mRNA_C-tenellus_contig10369.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10369:653..1323- (Choristocarpus tenellus KU2346)back to top |