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Homology
BLAST of mRNA_C-tenellus_contig10360.2.1 vs. uniprot
Match: A0A6H5KD48_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD48_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 4.370e-18 Identity = 58/98 (59.18%), Postives = 64/98 (65.31%), Query Frame = 3 Query: 165 MNDRLSELTGGSGGGGRGGVNPFEVAIDINDYGEAPSKAEDG--AFMQGFFDTVNEVKKDIDSIKKACKDLDTLTQQATLTSSATAEADAKAQIHETI 452
MNDRL ELTGG V PFE+A FM+GFFD VN VKKDID++KKAC DLDTLTQQATLTSSAT EADAK+QI+ TI
Sbjct: 1 MNDRLGELTGGXXXXXX--VAPFEIAXXXXXXXXXXXXXXXXXXGFMEGFFDKVNAVKKDIDAVKKACTDLDTLTQQATLTSSATVEADAKSQINTTI 96
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7G5P2 |
| Preferred name | SYP111 |
| PFAMs | SNARE,Syntaxin |
| Model size | 1036 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K02201,ko:K03321,ko:K04560,ko:K08486,ko:K14411 |
| KEGG TC | 2.A.53.3 |
| KEGG Reaction | R03035 |
| KEGG Pathway | ko00770,ko01100,ko03015,ko04130,ko04721,ko04911,ko05031,map00770,map01100,map03015,map04130,map04721,map04911,map05031 |
| KEGG Module | M00120 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000149,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0003006,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0005886,GO:0005911,GO:0006605,GO:0006612,GO:0006810,GO:0006833,GO:0006836,GO:0006886,GO:0006887,GO:0006904,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009504,GO:0009506,GO:0009524,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010033,GO:0010119,GO:0010148,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0017156,GO:0022406,GO:0022414,GO:0023052,GO:0023061,GO:0030054,GO:0030133,GO:0030154,GO:0031201,GO:0031224,GO:0031347,GO:0031348,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0040007,GO:0042044,GO:0042221,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045055,GO:0045184,GO:0045185,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048468,GO:0048489,GO:0048519,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050832,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0080134,GO:0090150,GO:0090174,GO:0097305,GO:0097479,GO:0097480,GO:0097708,GO:0098542,GO:0098791,GO:0098796,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1901700,GO:1990778 |
| Exons | 2 |
| Evalue | 5.41e-20 |
| EggNOG OGs | COG5074@1|root,KOG0810@2759|Eukaryota |
| Ec32 ortholog description | Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) |
| Ec32 ortholog | Ec-12_008590.1 |
| EC | 2.7.7.3 |
| Description | SNAP receptor activity |
| Cds size | 333 |
| COG category | U |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko04131,ko04147 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789127.6028187-UTR-C-tenellus_contig10360:343..882 | 1680789127.6028187-UTR-C-tenellus_contig10360:343..882 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig10360 344..882 - |
| 1680789127.6404536-UTR-C-tenellus_contig10360:1501..1665 | 1680789127.6404536-UTR-C-tenellus_contig10360:1501..1665 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig10360 1502..1665 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789127.6133306-CDS-C-tenellus_contig10360:882..1023 | 1680789127.6133306-CDS-C-tenellus_contig10360:882..1023 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig10360 883..1023 - |
| 1680789127.6216068-CDS-C-tenellus_contig10360:1309..1501 | 1680789127.6216068-CDS-C-tenellus_contig10360:1309..1501 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig10360 1310..1501 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10360.2.1 >prot_C-tenellus_contig10360.2.1 ID=prot_C-tenellus_contig10360.2.1|Name=mRNA_C-tenellus_contig10360.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MNDRLSELTGGSGGGGRGGVNPFEVAIDINDYGEAPSKAEDGAFMQGFFD
TVNEVKKDIDSIKKACKDLDTLTQQATLTSSATAEADAKAQIHETITRLS
VLTLCILFTL* back to topmRNA from alignment at C-tenellus_contig10360:344..1665- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig10360.2.1 ID=mRNA_C-tenellus_contig10360.2.1|Name=mRNA_C-tenellus_contig10360.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1322bp|location=Sequence derived from alignment at C-tenellus_contig10360:344..1665- (Choristocarpus tenellus KU2346)
GCACAACGGTGTTGTGCAGTATCCAGTGCAAGGGAAGGTTATTTCCTCTA
CGTCAACTTAGTGTTGATCATTGTGACAGCGAATTGAAATAGTGAAGTGT
TACAGTTGGATAATTGTACCTTTTCTTGATGGGCAAGTAAGACTGGTAGG
TGAGCAAGGGCGGTATGAACGATCGTCTATCAGAGCTCACTGGGGGTTCA
GGAGGGGGGGGAAGAGGTGGAGTGAACCCTTTCGAGGTCGCTATAGACAT
AAATGACTACGGAGAGGCACCTTCAAAAGCAGAAGATGGTGCGTTTATGC
AGGGATTCTTCGACACTGTCAACGAGGTCAAGAAGGACATCGATAGCATC
AAGAAGGTAAGGTAAACCGGTGAATTGGGGGTAATTCCCCTCGAACAGGG
TCAGTTTCGAGTTTCGAACGCGGTGTGCATGGGTATTTCGCGCGTCAATC
TACACAAAACCACAAACCCACAAGACGAGCCAAATAATCAACCCCCAGAA
ACCTTACCTCAAGCTTTTCCCAACTCTGGGTAGCTCTAACGTAATGTACG
TTCAAGATGTGTCGATAATATGCAGTGCGCCACAAGGTCAAATGTCTGAA
ACCATTCGAACATGCTGTGGATGGATACTCACTATTACACAGGCATGCAA
GGACCTCGATACGTTGACACAACAAGCCACCCTGACCTCAAGTGCCACAG
CGGAGGCCGATGCCAAGGCTCAGATCCATGAGACAATAACAAGGTTGAGT
GTCCTAACCCTATGCATCCTCTTCACTCTCTAATATTTCGCTTGCTGTAT
ACTCATTTCCTTGTGTGTTGTGCAAAGGTCGGAGATAAGCCCGTGACTAC
ACATGCACAGGGTGGTCGCGAATATGGTGTGTTATGCTCATGAGCTGTTA
GTCCGTGACTGTCCCATATCCCTAGCCACTCTCCACGGATTTGGATTCAG
TTTTAGTTTTTCAGTTTTGTGTCAATCTCCCCGATTTTCCCTCTTATCTC
CAAGTTCCGAGTAAGCTAAGGCTCGAGAATGGTTCCTTCGACGGTTATTG
TAGACATACGGTGAGGGGGGCTTCATTCTGAACGCATCTCCCACGGTATG
GATTGGGTGACAACATATTTCCTTCCTCACTCCTTATTCACGCTCCTGCT
TTGAAGAAGAATGCTGCAGTATATGATTGCGTGGTGGGCTCAGTGTCAAC
CCGCCTGCAGATGCATTTCTGGGAAGAAGTAACAAAAAACCCCTGTGTTA
AAAAAGTGAAATAACTTGCAGAGGGAAAGAAATCTTGCAAAACGCCTTCC
CCCTATAACTGAAACAGATACA back to topCoding sequence (CDS) from alignment at C-tenellus_contig10360:344..1665- >mRNA_C-tenellus_contig10360.2.1 ID=mRNA_C-tenellus_contig10360.2.1|Name=mRNA_C-tenellus_contig10360.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig10360:344..1665- (Choristocarpus tenellus KU2346)
ATGAACGATCGTCTATCAGAGCTCACTGGGGGTTCAGGAGGGGGGGGAAG
AGGTGGAGTGAACCCTTTCGAGGTCGCTATAGACATAAATGACTACGGAG
AGGCACCTTCAAAAGCAGAAGATGGTGCGTTTATGCAGGGATTCTTCGAC
ACTGTCAACGAGGTCAAGAAGGACATCGATAGCATCAAGAAGGCATGCAA
GGACCTCGATACGTTGACACAACAAGCCACCCTGACCTCAAGTGCCACAG
CGGAGGCCGATGCCAAGGCTCAGATCCATGAGACAATAACAAGGTTGAGT
GTCCTAACCCTATGCATCCTCTTCACTCTCTAA back to top
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