mRNA_C-tenellus_contig10358.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10358.3.1
Unique NamemRNA_C-tenellus_contig10358.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.210e-32
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 3 
Query:   96 EVAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVDAAAKAAL---------------------IPDLSRHKRKPQLLRIRKHPGER 506
            +  VR+HVGGL +GV+ N+LA+L AR LP+G+A P+AE+++D STG+ERGFGYV++ G E  K GA++ I  Y+G +WKG K+RVG AKGDY+QRLK EW      DAAA                         +P    +K +P  LR+R+ PGER
Sbjct:    8 DAGVRLHVGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEW------DAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARP-FLRLRRRPGER 158
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.630e-19
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 3 
Query:  213 IKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVDAAAKAAL-----------------IPDLSRHKRKPQLLRIRKHPGER 506
            ++D STG+ERGFGYV++ G E  K GA++ I  YNG +WKG K+RVG AKGDY+QRLK EW      DAAAK                    +P    +K +P  LR+R+ PGER
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEW------DAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAYKARP-FLRLRRRPGER 108
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 67.8 bits (164), Expect = 1.490e-8
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 3 
Query:  105 VRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVDAAA 425
            +R+ VGGLP  V   +L    AR  P G    S  V +    G  RGFGYV +  V  A     +   VYNGTKW+G +LRV  A+  ++ RLK EWA + +  + A
Sbjct:   31 IRLFVGGLPADVTPEELQ---ARFQPFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVSEAS--LSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEWASQNEPQSEA 132
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A0D7AJ20_9AGAR (RRM domain-containing protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AJ20_9AGAR)

HSP 1 Score: 62.8 bits (151), Expect = 4.360e-7
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:   90 DKEVAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLS-TGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEE 392
            D++V  R+HV GL  G+  +DL    ++ L A     + +   +L   G  R FGYVT+   E       + +NV +G+ WKG KLR+G+AK DY +RL+ E
Sbjct:    2 DEKVTKRLHVSGLTPGLTKDDL----SKRLSAFGTVKALDGFGELDGLGSPRNFGYVTI---ETTSANLAKCLNVLSGSTWKGAKLRIGLAKPDYSERLQRE 96
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A1V9Y4P5_9STRA (Radial spoke head 10 family protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y4P5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.240e-6
Identity = 37/140 (26.43%), Postives = 74/140 (52.86%), Query Frame = 3 
Query:  108 RIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINV----YNGTKWKGNKLRVGVAKGDYMQRLK---EEWAEREKVDAAAKAALIPDLSRHKRKPQLLRIRKHPGER 506
            R+++G LP+ V  ++L   F R +P+G      +++ + +      F Y+TV      +D  +++++     Y+ TKWKG +LRV +AK DY++RL+   EE A+R +     +  ++          +L + +++ G+R
Sbjct:  629 RVYIGRLPEDVTKDELVDRFERLVPSGVVLEDVQLMANSAAS---DFAYLTVRSSARDEDLEERIVDALVKAYHNTKWKGKRLRVEIAKPDYLERLRLLREEDAKRREDTILVRNEMLSSTGFENPVLELKKTKRYRGKR 765
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A1E5QJW1_9CYAN (RNA-binding protein n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QJW1_9CYAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-5
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3 
Query:   99 VAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRV 350
            +++R++VG LPK ++  +LA++FA    AG +  S +VI D  TG  RGFG+VTV   E A     ++I  YNG  +K N L++
Sbjct:    1 MSIRLYVGNLPKEIDRQELAAVFA---DAGDSI-STKVITDRKTGKCRGFGFVTVKTDEQA----DEIIEKYNGYVFKDNALKI 76
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A024G9W0_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9W0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.520e-5
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 3 
Query:  105 VRIHVGGLPKGVNSNDLASLF---------------ARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKV 413
            VR+++GGL  G N  DL +                 A  LP         + KD ST   RGFGY   TG E        +I V+N TKW+G+ L+V  A   Y+++L++EW + EK+
Sbjct:   22 VRLYIGGLSNGENILDLQTRIQSFVEQQRTSMHRNCALILPI-QVMKEKVISKDESTVQLRGFGYADFTG-EDVSSVVIDIIKVFNKTKWRGSVLKVETANPHYIEKLRKEWIDEEKL 137
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BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A8J4BQ41_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQ41_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 9.260e-5
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 3 
Query:   99 VAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVI--KDLSTGLE-------------RGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVD 416
            + VR+ +GGLP  +++ DL S F+   P G    + E+I  KD +T                RGF YV +   + A     + ++VYN +KW+GN LRV +AK  Y+ RL  EW E+ +++
Sbjct:    1 MVVRLFLGGLPHDISAADLRSRFS---PFGKV-EAIEIIPPKDQTTTAVAQTSFQTLSGEKCRGFAYVELDPKDEAS--VHKCLSVYNNSKWRGNVLRVELAKPIYLARLHVEWQEQARLE 115
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FS94_ECTSI4.210e-3246.20RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE3.630e-1946.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HXN5_KLENI1.490e-839.25Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
A0A0D7AJ20_9AGAR4.360e-737.25RRM domain-containing protein n=1 Tax=Fistulina he... [more]
A0A1V9Y4P5_9STRA4.240e-626.43Radial spoke head 10 family protein (Fragment) n=1... [more]
A0A1E5QJW1_9CYAN1.390e-540.48RNA-binding protein n=2 Tax=unclassified Desertifi... [more]
A0A024G9W0_9STRA1.520e-533.90RRM domain-containing protein n=1 Tax=Albugo candi... [more]
A0A8J4BQ41_9CHLO9.260e-533.88RRM domain-containing protein n=1 Tax=Volvox afric... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10358contigC-tenellus_contig10358:1736..3528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000024297
Model size1105
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.26e-13
EggNOG OGs2C9NB@1|root,2R9D5@2759|Eukaryota,1MABP@121069|Pythiales
DescriptionNucleolar protein 8 (Nucleolar protein Nop132).. Source PGD
Cds size429
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.240548-UTR-C-tenellus_contig10358:1735..23311680789127.240548-UTR-C-tenellus_contig10358:1735..2331Choristocarpus tenellus KU2346UTRC-tenellus_contig10358 1736..2331 -
1680789127.282967-UTR-C-tenellus_contig10358:3448..35281680789127.282967-UTR-C-tenellus_contig10358:3448..3528Choristocarpus tenellus KU2346UTRC-tenellus_contig10358 3449..3528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.25378-CDS-C-tenellus_contig10358:2331..25151680789127.25378-CDS-C-tenellus_contig10358:2331..2515Choristocarpus tenellus KU2346CDSC-tenellus_contig10358 2332..2515 -
1680789127.2652593-CDS-C-tenellus_contig10358:2905..31131680789127.2652593-CDS-C-tenellus_contig10358:2905..3113Choristocarpus tenellus KU2346CDSC-tenellus_contig10358 2906..3113 -
1680789127.2745612-CDS-C-tenellus_contig10358:3411..34481680789127.2745612-CDS-C-tenellus_contig10358:3411..3448Choristocarpus tenellus KU2346CDSC-tenellus_contig10358 3412..3448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10358.3.1prot_C-tenellus_contig10358.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10358 2332..3448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10358.3.1

>prot_C-tenellus_contig10358.3.1 ID=prot_C-tenellus_contig10358.3.1|Name=mRNA_C-tenellus_contig10358.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=143bp
MNEDKEVAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLST
GLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQR
LKEEWAEREKVDAAAKAALIPDLSRHKRKPQLLRIRKHPGER*
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mRNA from alignment at C-tenellus_contig10358:1736..3528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10358.3.1 ID=mRNA_C-tenellus_contig10358.3.1|Name=mRNA_C-tenellus_contig10358.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1793bp|location=Sequence derived from alignment at C-tenellus_contig10358:1736..3528- (Choristocarpus tenellus KU2346)
GCAAGCCTGAGAAGTTATGGAACTCCAATGTTGTTTGCCTGATCCCATAA
GACGACGATTGTAATCCCACATGCAAAGCTATGAACGAGGACAAGGAGGT
AGCAGTCAGGATTCATGGCAAGTTATTAAGCTAGATTCAAATTGGAAGTT
GCTTCTAGTTAACTGGGTCTGAATGAAGAGGCAAATCTATGGTTGTGTTG
GACCTCTGTCGCCCTTTCAATATCCTATACCTTGAATACTTGGTGCAGTT
GCGTGGTGTGTCGACTATAGTGTCGTGGTTTTGTATCAATCGTAGAGCCT
ACCCTATCGCCGCCTCGTGTGCTTATCTGAAGCTGCTAACAGACTCAAAT
CACGTCCTCACCTTCAACCATTTGGGCGTGTATCATCCAAACATGATTTC
CTTGAACTCCTGTAGTTGGGGGACTCCCTAAAGGGGTCAACTCCAATGAC
CTCGCAAGCCTTTTTGCTCGAGCCCTTCCTGCGGGGAGTGCGTTTCCTTC
AGCCGAAGTGATTAAGGATTTGTCGACAGGTCTTGAACGTGGATTCGGCT
ATGTAACAGTAACAGGTGTCGAGGCCGCGAAGGATGGTGCTCAACAGGTC
ATCAACGTCTACAATGGGACAAAGTAAGTCAGTGTGATTGTGTTAGAGGT
TCAAATCCCGTCTTGCTAACCTCGCGTCCGGACGTGCAAACATGAGGCCT
GAGGCCTGTCGAATTGTCTCGCAACACCACGTAAGCTGCAGGCTTGATGG
AAGGCTTCTGCTAAAGTTAACTTGTGGCACTTTGTCGAGCAATTACTATG
CATCCGCTCATGGGTGACATGAATATCTGGTAGCGATTGCCAGTTGAACT
TACGCACTTTGAGGGCAGAGTTTTATCACGGATTCAACTCCAGCAAGTAA
TCTCAAATCGCTGCCTTGGTCTATCTACCAGACCCTCACAAACCACCATA
TCAACTGCGTTTCCTTTGATGTGCCTACCTCGCCCTGGCCGGTCAACGAA
CGTCTGAGTGAAGGTGGAAGGGGAATAAATTGCGCGTGGGTGTGGCAAAA
GGCGACTACATGCAGCGATTAAAGGAGGAGTGGGCAGAAAGGGAAAAGGT
CGATGCCGCGGCAAAAGCTGCCCTGATACCAGATCTCTCCAGACACAAAC
GCAAGCCCCAACTTCTGCGGATACGCAAGCACCCTGGTGAGCGATAAAAT
CGCTCTGTAGGGCTTGAACGAATGTGGTACATTTTTCTTGCGTATGGAAG
TCACTGCAGTACTCAGTGTAACGACGTAATGTTGAGTAGCATAGTCGCAT
TCGAAATGTCATTTTGTGTTGGAACTAGGCTTAGTGTTAGGGTCGGCTTA
GAGGATTCACTAGTGGCTTTTTTCAAGCTCCTCTACAGTCTAACAACCAA
GGGACTTGTGTATTGCCGAAACAAACACCTCATTTTTTCCCCATGGCAGT
TACACCATTTCCATTTCACTGGAGACATCACTACCAAGGTATTCGTACCT
TCTTTTGGCATCAGCTTATGGTGCCAGAAATCGGTGTGTCTCCGTTGCCT
CAGCGAGTGAGAATTATCTTGAAGCGAACGCGCACAAGATGTGGTGTAGA
AGTCAAGAGTTCACACTATAGGGTTTTAGCACTATACCGTTAGATTGAAA
ACACATTTGACTCTTTTTTTTTCAGCGAGCAATCTAATTGGCTCTTTGAT
ATTTCCTTGTTGACCTAATTGTGTCTTCTCCTCCTCCTCCTCCTCCTGTT
ATATATATATATATATATATATATTATTTATTTTATAACACTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10358:1736..3528-

>mRNA_C-tenellus_contig10358.3.1 ID=mRNA_C-tenellus_contig10358.3.1|Name=mRNA_C-tenellus_contig10358.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=429bp|location=Sequence derived from alignment at C-tenellus_contig10358:1736..3528- (Choristocarpus tenellus KU2346)
ATGAACGAGGACAAGGAGGTAGCAGTCAGGATTCATGTTGGGGGACTCCC
TAAAGGGGTCAACTCCAATGACCTCGCAAGCCTTTTTGCTCGAGCCCTTC
CTGCGGGGAGTGCGTTTCCTTCAGCCGAAGTGATTAAGGATTTGTCGACA
GGTCTTGAACGTGGATTCGGCTATGTAACAGTAACAGGTGTCGAGGCCGC
GAAGGATGGTGCTCAACAGGTCATCAACGTCTACAATGGGACAAAGTGGA
AGGGGAATAAATTGCGCGTGGGTGTGGCAAAAGGCGACTACATGCAGCGA
TTAAAGGAGGAGTGGGCAGAAAGGGAAAAGGTCGATGCCGCGGCAAAAGC
TGCCCTGATACCAGATCTCTCCAGACACAAACGCAAGCCCCAACTTCTGC
GGATACGCAAGCACCCTGGTGAGCGATAA
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