mRNA_C-tenellus_contig10358.3.1 (mRNA) Choristocarpus tenellus KU2346
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI) HSP 1 Score: 135 bits (341), Expect = 4.210e-32 Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 3 Query: 96 EVAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVDAAAKAAL---------------------IPDLSRHKRKPQLLRIRKHPGER 506
+ VR+HVGGL +GV+ N+LA+L AR LP+G+A P+AE+++D STG+ERGFGYV++ G E K GA++ I Y+G +WKG K+RVG AKGDY+QRLK EW DAAA +P +K +P LR+R+ PGER
Sbjct: 8 DAGVRLHVGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEW------DAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARP-FLRLRRRPGER 158
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.630e-19 Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 3 Query: 213 IKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVDAAAKAAL-----------------IPDLSRHKRKPQLLRIRKHPGER 506
++D STG+ERGFGYV++ G E K GA++ I YNG +WKG K+RVG AKGDY+QRLK EW DAAAK +P +K +P LR+R+ PGER
Sbjct: 1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEW------DAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAYKARP-FLRLRRRPGER 108
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI) HSP 1 Score: 67.8 bits (164), Expect = 1.490e-8 Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 3 Query: 105 VRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVDAAA 425
+R+ VGGLP V +L AR P G S V + G RGFGYV + V A + VYNGTKW+G +LRV A+ ++ RLK EWA + + + A
Sbjct: 31 IRLFVGGLPADVTPEELQ---ARFQPFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVSEAS--LSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEWASQNEPQSEA 132
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A0D7AJ20_9AGAR (RRM domain-containing protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AJ20_9AGAR) HSP 1 Score: 62.8 bits (151), Expect = 4.360e-7 Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 3 Query: 90 DKEVAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLS-TGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEE 392
D++V R+HV GL G+ +DL ++ L A + + +L G R FGYVT+ E + +NV +G+ WKG KLR+G+AK DY +RL+ E
Sbjct: 2 DEKVTKRLHVSGLTPGLTKDDL----SKRLSAFGTVKALDGFGELDGLGSPRNFGYVTI---ETTSANLAKCLNVLSGSTWKGAKLRIGLAKPDYSERLQRE 96
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A1V9Y4P5_9STRA (Radial spoke head 10 family protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y4P5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.240e-6 Identity = 37/140 (26.43%), Postives = 74/140 (52.86%), Query Frame = 3 Query: 108 RIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINV----YNGTKWKGNKLRVGVAKGDYMQRLK---EEWAEREKVDAAAKAALIPDLSRHKRKPQLLRIRKHPGER 506
R+++G LP+ V ++L F R +P+G +++ + + F Y+TV +D +++++ Y+ TKWKG +LRV +AK DY++RL+ EE A+R + + ++ +L + +++ G+R
Sbjct: 629 RVYIGRLPEDVTKDELVDRFERLVPSGVVLEDVQLMANSAAS---DFAYLTVRSSARDEDLEERIVDALVKAYHNTKWKGKRLRVEIAKPDYLERLRLLREEDAKRREDTILVRNEMLSSTGFENPVLELKKTKRYRGKR 765
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A1E5QJW1_9CYAN (RNA-binding protein n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QJW1_9CYAN) HSP 1 Score: 55.1 bits (131), Expect = 1.390e-5 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3 Query: 99 VAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRV 350
+++R++VG LPK ++ +LA++FA AG + S +VI D TG RGFG+VTV E A ++I YNG +K N L++
Sbjct: 1 MSIRLYVGNLPKEIDRQELAAVFA---DAGDSI-STKVITDRKTGKCRGFGFVTVKTDEQA----DEIIEKYNGYVFKDNALKI 76
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A024G9W0_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9W0_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.520e-5 Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 3 Query: 105 VRIHVGGLPKGVNSNDLASLF---------------ARALPAGSAFPSAEVIKDLSTGLERGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKV 413
VR+++GGL G N DL + A LP + KD ST RGFGY TG E +I V+N TKW+G+ L+V A Y+++L++EW + EK+
Sbjct: 22 VRLYIGGLSNGENILDLQTRIQSFVEQQRTSMHRNCALILPI-QVMKEKVISKDESTVQLRGFGYADFTG-EDVSSVVIDIIKVFNKTKWRGSVLKVETANPHYIEKLRKEWIDEEKL 137
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Match: A0A8J4BQ41_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQ41_9CHLO) HSP 1 Score: 55.8 bits (133), Expect = 9.260e-5 Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 3 Query: 99 VAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVI--KDLSTGLE-------------RGFGYVTVTGVEAAKDGAQQVINVYNGTKWKGNKLRVGVAKGDYMQRLKEEWAEREKVD 416
+ VR+ +GGLP +++ DL S F+ P G + E+I KD +T RGF YV + + A + ++VYN +KW+GN LRV +AK Y+ RL EW E+ +++
Sbjct: 1 MVVRLFLGGLPHDISAADLRSRFS---PFGKV-EAIEIIPPKDQTTTAVAQTSFQTLSGEKCRGFAYVELDPKDEAS--VHKCLSVYNNSKWRGNVLRVELAKPIYLARLHVEWQEQARLE 115 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10358.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10358.3.1 >prot_C-tenellus_contig10358.3.1 ID=prot_C-tenellus_contig10358.3.1|Name=mRNA_C-tenellus_contig10358.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=143bp MNEDKEVAVRIHVGGLPKGVNSNDLASLFARALPAGSAFPSAEVIKDLSTback to top mRNA from alignment at C-tenellus_contig10358:1736..3528- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10358.3.1 ID=mRNA_C-tenellus_contig10358.3.1|Name=mRNA_C-tenellus_contig10358.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1793bp|location=Sequence derived from alignment at C-tenellus_contig10358:1736..3528- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10358:1736..3528- >mRNA_C-tenellus_contig10358.3.1 ID=mRNA_C-tenellus_contig10358.3.1|Name=mRNA_C-tenellus_contig10358.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=429bp|location=Sequence derived from alignment at C-tenellus_contig10358:1736..3528- (Choristocarpus tenellus KU2346)back to top |