mRNA_C-tenellus_contig10351.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10351.1.2
Unique NamemRNA_C-tenellus_contig10351.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: D7FT73_ECTSI (Similar to spermatogenesis associated factor SPAF n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT73_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 7.670e-123
Identity = 205/246 (83.33%), Postives = 224/246 (91.06%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGG--TGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFR 733
            EVVEWPL+ P+AF RMG+SPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERA+Q+LFKRARAAAPTI+FFDEVDALACKRGGG  TGAGATERVLTQLLTELDGIQ +KR+VVVAATNRPDVIDPALLRPGRLDRLVYVPPPD+ SR EILR+SL  VP + DV+   LA +T GFSGAEVVALCREASICALEEDRSA +V Q HLL AL Q+RPQITP+VLA+Y +F+
Sbjct:  875 EVVEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALACKRGGGGETGAGATERVLTQLLTELDGIQPVKRLVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDVLSRREILRLSLAKVPCAGDVEHEALARRTEGFSGAEVVALCREASICALEEDRSATQVRQAHLLEALGQMRPQITPAVLASYASFQ 1120          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: W7TTL3_9STRA (Spermatogenesis-associated protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTL3_9STRA)

HSP 1 Score: 328 bits (840), Expect = 2.890e-103
Identity = 177/255 (69.41%), Postives = 202/255 (79.22%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSED---------VDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQ-RHLLLALQQIRPQITPSVLAAYDAFRG 736
            E VEWPL  P+AF RMGI+PP+GVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESE+ALQ LFK+ARAAAPT+VFFDEVDALA +RG G    A+ERVL+QLLTELDG+Q L+RVVVVAATNRPD++DPALLRPGR+DR VYVPPPDLASR EIL+I+L  VPT            VD   LA +T GFSGAEVVAL REA++CA+EED    R+ + RH   AL   + QITP +L  Y  + G
Sbjct:  226 ECVEWPLTRPEAFVRMGIAPPKGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESEKALQGLFKKARAAAPTVVFFDEVDALAGRRGDGEDCKASERVLSQLLTELDGVQPLRRVVVVAATNRPDLLDPALLRPGRIDRRVYVPPPDLASRREILKIALRGVPTESPEGEASEGAGVDLEELARRTEGFSGAEVVALSREAALCAVEEDPVHARLLRGRHFEQALAGWQRQITPRMLEYYRRYAG 480          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: A0A2P4X318_9STRA (ATPase AFG2 protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X318_9STRA)

HSP 1 Score: 315 bits (807), Expect = 4.550e-101
Identity = 154/244 (63.11%), Postives = 198/244 (81.15%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFR 733
            E VEWPL+ P+AF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KGPEL SKW+GESE+ ++ +F++ARAA+PT+VFFDE+DALA  RG G  +GA++RVL+QLLTELDG++ LKRV+VVAATNRPD++DPAL+RPGR+DR +YV PPD+ +RE+IL+I     P + DV    LA  TA FSGAE+ ALCREA++ A+EEDR+A  V +RH + AL  + PQI   +LA ++ FR
Sbjct:   36 EAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKGPELFSKWVGESEQQVREVFRKARAASPTVVFFDEIDALASTRGSGGSSGASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVPAREQILQIHTRKTPLASDVSMTELAIATARFSGAELQALCREAALHAVEEDRAAANVAKRHFVRALSVVTPQIDDRMLAFFERFR 279          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: A0A4D9CZ55_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ55_9STRA)

HSP 1 Score: 327 bits (837), Expect = 4.390e-99
Identity = 176/255 (69.02%), Postives = 202/255 (79.22%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSED---------VDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQ-RHLLLALQQIRPQITPSVLAAYDAFRG 736
            E VEWPL  P+AF RMGI+PP+GVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESE+ALQ LFK+ARAAAPT+VFFDEVDALA +RG G    A+ERVL+QLLTELDG+Q L+RVVVVAATNRPD++DPALLRPGR+DR VYVPPPDLASR EIL+I+L  VPT            +D   LA +T GFSGAEVVAL REA++CA+EED    R+ + RH   AL   + QITP +L  Y  + G
Sbjct:  559 ECVEWPLTRPEAFVRMGIAPPKGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESEKALQGLFKKARAAAPTVVFFDEVDALAGRRGDGEDCKASERVLSQLLTELDGVQPLRRVVVVAATNRPDLLDPALLRPGRIDRRVYVPPPDLASRREILKIALRGVPTESPEGEASEGAGLDLEELARRTEGFSGAEVVALSREAALCAVEEDPVHARLLRGRHFEQALAGWQRQITPRMLEYYRRYAG 813          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: A0A0W8DS50_PHYNI (M96 mating-specific protein family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DS50_PHYNI)

HSP 1 Score: 312 bits (799), Expect = 1.190e-98
Identity = 154/246 (62.60%), Postives = 198/246 (80.49%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFRGA 739
            E VEWPL+ P+AF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KGPEL SKW+GESE+ ++ +F++AR A+PT+VFFDE+DALA  RG G  +GA++RVL+QLLTELDG++ LKRV+VVAATNRPD++DPAL+RPGR+DR +YV PPD+ +RE+IL+I     P + DV    LA  TA FSGAE+ ALCREA++ A+EEDR+A  V +RH + AL  + PQI   +LA ++ FR A
Sbjct:  120 EAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKGPELFSKWVGESEQQVREVFRKARGASPTVVFFDEIDALASMRGTGGSSGASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVPAREQILQIHTRKTPLASDVSLAELAIATARFSGAELQALCREAALHAVEEDRAAVNVAKRHFVRALAVVTPQIDDRMLAFFERFRMA 365          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: K3W9Z8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Z8_GLOUD)

HSP 1 Score: 317 bits (811), Expect = 5.760e-98
Identity = 159/246 (64.63%), Postives = 202/246 (82.11%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGA--TERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFR 733
            E VEWPLK P+AF RMGI PP+GVLLYGPPGCSKTL A+ALATES MNF+A+KGPEL SKW+GESE+A+QS+F++ARAAAPT+VFFDE+DA+A +RGGG G G+   +RVL+QLLTELDGI+ LK+V+VVAATNRPD+ID AL+RPGR+DR++YV PPDL +R EIL I    +P + DV+ + LA  TA FSGAE+ +LCREA++ A+EE ++A+ V  RH L AL  I+PQI  ++LA +D FR
Sbjct:  308 EAVEWPLKHPEAFIRMGIRPPKGVLLYGPPGCSKTLTAKALATESSMNFIAIKGPELFSKWVGESEKAVQSIFRKARAAAPTVVFFDEIDAIASQRGGGDGGGSQVADRVLSQLLTELDGIEPLKQVLVVAATNRPDLIDSALMRPGRIDRVLYVGPPDLQARHEILSIHCRKIPLASDVNLQELAIATARFSGAELYSLCREAAMAAIEESKTADVVNTRHFLRALTLIQPQIDDAMLAFFDNFR 553          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: H3G7P5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7P5_PHYRM)

HSP 1 Score: 314 bits (805), Expect = 2.120e-97
Identity = 154/244 (63.11%), Postives = 199/244 (81.56%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFR 733
            E VEWPL+ P+AF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KGPEL SKW+GESE+ ++ +F++ARAA+PT+VFFDE+DALA  RG G  +GA++RVL+QLLTELDG++ LKRV+VVAATNRPD++DPAL+RPGR+DR +YV PPD+ +RE+IL+I   S P + DV    LA  +A FSGAE+ ALCREA++ A+EEDR+A  V +RH + AL  + PQI   +LA ++ FR
Sbjct:  289 EAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKGPELFSKWVGESEQQVREIFRKARAASPTVVFFDEIDALASTRGSGGSSGASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVPAREQILQIHTRSTPLAPDVSLNELAIASARFSGAELRALCREAALHAVEEDRAATNVAKRHFVRALAVVTPQIDDRMLAFFERFR 532          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: A0A7J2KF49_9CREN (AAA family ATPase n=1 Tax=Acidilobales archaeon TaxID=2268176 RepID=A0A7J2KF49_9CREN)

HSP 1 Score: 301 bits (772), Expect = 1.150e-95
Identity = 146/244 (59.84%), Postives = 193/244 (79.10%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTG-AGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAF 730
            E VEWPLK P+AF R+GI PPRG+LL+GPPGC KTL+A+A+ATESG NF++VKGPE+LSKW+GESERA++ +F+RAR AAP I+FFDE+DA+A  RG G G +  TERV++Q+LTE+DGI+ L+ VVV+AATNRPD+IDPALLRPGRLD+L+YVPPPD+  R EI ++    +P +EDVD   LA+ T G++GA++ A+CREA++ AL E+  A  V   H L AL+ IRP IT  ++  Y A+
Sbjct:   32 ETVEWPLKHPEAFRRLGIKPPRGILLFGPPGCGKTLLAKAVATESGANFISVKGPEVLSKWVGESERAIRLIFRRARQAAPCIIFFDEIDAIAPVRGAGIGDSHVTERVVSQILTEMDGIEKLENVVVIAATNRPDIIDPALLRPGRLDKLIYVPPPDIKGRYEIFKVHTRKMPLAEDVDLWRLAELTEGYTGADIEAVCREAALMALRENIEAREVRMEHFLAALKIIRPSITEDMVKMYKAW 275          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: A0A1V9ZWH3_9STRA (ATPase AFG2 protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWH3_9STRA)

HSP 1 Score: 305 bits (782), Expect = 1.340e-95
Identity = 149/244 (61.07%), Postives = 195/244 (79.92%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFR 733
            E VEWPL+ P+AF RMGI PP+G+LLYGPPGCSKTL A+ALATE GMNF+A+KGPEL SKW+GESE+A+QS+F +ARAAAP++VFFDE+DA+A  R  G+ +G  +RVL+QLL ELDGI+ LK+V++VAATNRPD+ID AL+RPGR+DR++YV PPD  +REEILRI    +P +EDV+ + LA+ T  FSGAE+ A CREA++CA++ED + + V +RH   AL  I PQI   +L  +D +R
Sbjct:  158 EAVEWPLQHPEAFVRMGIRPPKGILLYGPPGCSKTLTAKALATEGGMNFIAIKGPELFSKWVGESEKAIQSIFSKARAAAPSVVFFDEIDAVASSRQ-GSSSGVGDRVLSQLLNELDGIEPLKKVIIVAATNRPDLIDSALMRPGRIDRILYVGPPDCTAREEILRIHTRKMPLAEDVNIKELANLTDRFSGAELAAYCREAALCAIQEDYNTKSVARRHFNSALGMITPQIDDQMLDFFDHYR 400          
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Match: G4YK00_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4YK00_PHYSP)

HSP 1 Score: 315 bits (807), Expect = 2.940e-95
Identity = 155/244 (63.52%), Postives = 198/244 (81.15%), Query Frame = 2
Query:    2 EVVEWPLKFPQAFARMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTELDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEILRISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAERVCQRHLLLALQQIRPQITPSVLAAYDAFR 733
            E VEWPL+ P+AF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KGPEL SKW+GESE+ ++ +F++ARAA+PT+VFFDE+DALA  RG G G+GA++RVL+QLLTELDG++ LKRV+VVAATNRPD++DPAL+RPGR+DR +YV PPD+  RE+IL+I     P + DV    LA  TA FSGAE+ ALCREA++ A+EEDR+A  V +RH + AL  + PQI   +LA ++ FR
Sbjct:  507 EAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKGPELFSKWVGESEQQVREVFRKARAASPTVVFFDEIDALASTRGSGGGSGASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVPVREQILQIHTRKTPLASDVSLAELAIATARFSGAELQALCREAALHAVEEDRAAVNVAKRHFVRALSIVTPQIDDRMLAFFERFR 750          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10351.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT73_ECTSI7.670e-12383.33Similar to spermatogenesis associated factor SPAF ... [more]
W7TTL3_9STRA2.890e-10369.41Spermatogenesis-associated protein 5 n=1 Tax=Nanno... [more]
A0A2P4X318_9STRA4.550e-10163.11ATPase AFG2 protein n=1 Tax=Phytophthora palmivora... [more]
A0A4D9CZ55_9STRA4.390e-9969.02Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0W8DS50_PHYNI1.190e-9862.60M96 mating-specific protein family n=1 Tax=Phytoph... [more]
K3W9Z8_GLOUD5.760e-9864.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3G7P5_PHYRM2.120e-9763.11Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7J2KF49_9CREN1.150e-9559.84AAA family ATPase n=1 Tax=Acidilobales archaeon Ta... [more]
A0A1V9ZWH3_9STRA1.340e-9561.07ATPase AFG2 protein n=1 Tax=Thraustotheca clavata ... [more]
G4YK00_PHYSP2.940e-9563.52Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10351contigC-tenellus_contig10351:2129..5596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT73
Preferred nameAFG2
PFAMsAAA
Model size1611
Max annot lvl2759|Eukaryota
KEGG koko:K13525,ko:K14575
KEGG TC3.A.16.1
KEGG Pathwayko03008,ko04141,ko05134,map03008,map04141,map05134
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0030684,GO:0030687,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0043167,GO:0043168,GO:0044085,GO:0044464,GO:0050896,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Exons4
Evalue1.78e-119
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-06_003850.2
DescriptionATP binding
Cds size729
COG categoryO
BRITEko00000,ko00001,ko00002,ko03009,ko03019,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10351.1.2prot_C-tenellus_contig10351.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10351 2965..5550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.9975567-UTR-C-tenellus_contig10351:2128..29641680789126.9975567-UTR-C-tenellus_contig10351:2128..2964Choristocarpus tenellus KU2346UTRC-tenellus_contig10351 2129..2964 -
1680789127.0625894-UTR-C-tenellus_contig10351:5550..55961680789127.0625894-UTR-C-tenellus_contig10351:5550..5596Choristocarpus tenellus KU2346UTRC-tenellus_contig10351 5551..5596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.0122616-CDS-C-tenellus_contig10351:2964..31561680789127.0122616-CDS-C-tenellus_contig10351:2964..3156Choristocarpus tenellus KU2346CDSC-tenellus_contig10351 2965..3156 -
1680789127.0258915-CDS-C-tenellus_contig10351:3611..38601680789127.0258915-CDS-C-tenellus_contig10351:3611..3860Choristocarpus tenellus KU2346CDSC-tenellus_contig10351 3612..3860 -
1680789127.037018-CDS-C-tenellus_contig10351:4692..48651680789127.037018-CDS-C-tenellus_contig10351:4692..4865Choristocarpus tenellus KU2346CDSC-tenellus_contig10351 4693..4865 -
1680789127.0473704-CDS-C-tenellus_contig10351:5435..55501680789127.0473704-CDS-C-tenellus_contig10351:5435..5550Choristocarpus tenellus KU2346CDSC-tenellus_contig10351 5436..5550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10351.1.2

>prot_C-tenellus_contig10351.1.2 ID=prot_C-tenellus_contig10351.1.2|Name=mRNA_C-tenellus_contig10351.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=243bp
MGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGES
ERALQSLFKRARAAAPTIVFFDEVDALACKRGGGTGAGATERVLTQLLTE
LDGIQLLKRVVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDLASREEIL
RISLGSVPTSEDVDSRLLADKTAGFSGAEVVALCREASICALEEDRSAER
VCQRHLLLALQQIRPQITPSVLAAYDAFRGAPHTIPGKRGAG*
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mRNA from alignment at C-tenellus_contig10351:2129..5596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10351.1.2 ID=mRNA_C-tenellus_contig10351.1.2|Name=mRNA_C-tenellus_contig10351.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3468bp|location=Sequence derived from alignment at C-tenellus_contig10351:2129..5596- (Choristocarpus tenellus KU2346)
TGAGGTGGTGGAGTGGCCACTCAAGTTTCCTCAGGCGTTTGCTAGGATGG GCATCTCCCCCCCCCGAGGTGTTTTGTTGTATGGACCTCCTGGATGCAGT AAGACACTCATGGCACGTGCTCTGGCGACTGAGTCGGGCATGAACTTCCT CGCTGTGAAAGGTCAGGTCAGGGTTACCTCTTCCTATACTTTCTTCATCT CTAGCTGGTCTCTTGCTTATTTTTCTTGCGGTTGGGTTATTTGCGATGTT GTAGTGATTGTCGATCATCCTGCCGCAGAATAGATTGTACTCATCATCTC ATTGGTCGACAACACTGCATACTCTTTGCCTTGATACCCAATCCTGCCTG CATGTATTTACGGCAGTGTTCAATTGGGAAGCCAAGCCTCTCGATGCAAT TCAAGGTCAAATAGTGCTTGTTTCAATCATGGCATTTTGTTCCTACCCAA ACCGTCCCACCAATAGTCTCGTTGTAAACAATTCATCTACTTTTTCCCTT GTTCTGTCCACTATCCTCAGCCCAAATAAATGGAATGAATTGAAGAGTTA GCATAGCCTTTTTTTTTTTAGTCAAAGCAACAAGTTTACCGTATCCTCTG GGTCCTACATATCAATGGCTTTGAGTAGTCCCTCTATCAATGCCTGAACC AGAAACACCTACCATGGCTCTACTTGAACCAGCCCACCATGCCTGGTGAC CTAAATCACTCCCACACATTCACTGATAAAGGGCCAGAGTTACTGAGCAA GTGGCTAGGCGAATCCGAACGTGCTCTGCAGTCCCTGTTTAAGAGGGCCA GGGCTGCTGCCCCTACCATTGTGTTTTTTGACGAGGTTGATGCCCTGGCC TGCAAGCGTGGTGGTGGCACTGGGGCTGGGGCCACTGAACGTGTTCTCAC TCAGGTAAGGACAATATTTAGAGGTGCTGAGTGCCATGCAAGTTGGTGGA GTGGTTGGTTACGGAGTTGAATGTTGGAAGTAGATTTTATTTTTTATTTA ACAATTGAACAGGTCGGACTTTTCTGATCTCCTCTCTTCCTCCAGTACCC TCAGCATGAAGTGGACAATCGTTAGGTCTCTCCTATGGATTAAGTTCAGT AAGAGAACAATGTAGTGTGTACATGTAAAGGTGAGGAGTATAGGGTTAGG GTTTTGTATTAATATTGCAGCCAACCACCTTTTGGTGCCACCAGACCCTA CCAACAATGTATGAGGCACAAAGTGGCATTTTTGCAAATAGTTGGTTATT CACTTTTTGATTTGCCTAGAAAGATTGGGAAAATATTTGTAGTTTCAAGT TGTAAAATATGGAGTCTCGTACCTGACTCTAACTCGTGAAGTACTTTTTG GTGGGTAATTCGGGTGGGGTAGCCATTTGGTGGTAAGTGGAAAATTCAAA CACCAAAACATTTGGAGTGATTGATGATAATGATCTGTGGGGCAACGCTG TGTTAAGTGATCACCGCCTTGCGTTTTGTAGGCATAACTACAAATAAAAT ATATCAAAACGCTGTGCAAGACCATCCAAAAACAAAATACTAGTAGTTTA ATGGCATTTTTTGCACCAATTTTCATCAAGAACCAGCAATCAAGAGTCAA GCTATTAACTTTTATAGTGCAATGTGGAAACACCCAAATGATGCTTTTGT CCCGATTACACCTTTGCCCAACACACCTCGCAATTCACCCATCCAGTTCC ACATCCCCGGAACCCTGCATTGCGTTGATCCTACAGCTTCTTACAGAACT GGATGGGATTCAGCTACTCAAGCGTGTGGTTGTTGTAGCTGCCACCAACC GGCCTGATGTAATTGACCCGGCCCTCCTGCGGCCAGGACGCCTGGATCGT TTGGTGTATGTCCCCCCCCCAGACCTCGCCTCCAGAGAGGAGATCCTGCG TATCTCACTGGGGTCTGTGCCTACCTCTGAGGACGTGGATTCAAGATTAC TGGCGGACAAGACAGCAGGATTCTCGGGGGCTGAGGTTTGTGTGTTTAAA ATGATGATTGAGGATTGGAGAAGTTGTGGAGTGCCTAGTGCATATGTTCT TGGTTTTATGAGGGGATGCATGGGTGTGATGATTTGCATGTATTATTATG TTGGCTGTGTTCTGAAGGGATGACACTCCCTGTTACGCCTCCCAACATAA AACTCATGTATGGTAGCGTAGGGTTTTTTTGGGGGGGGGGCAGGGGGAAA GGATTGCGCACAGGTAGTATAACTAAGATAAGAAAGAATGTACACTCATT GTTTACTTACCGGGGTGACCCTTATATTTTGGGGTATGGACCTTGGTGCA AAAAGAAAGAAAATGTACATCTATCTACTGAACTGCCTGTATGTCAATTT CAGTTTACAGGATCCCTTTGTAAAGATTTTTTTATGTTTATACGTTTTTG AATGACCTGTATCTGTATTGCCCAACACCCTTGCCTCTAGGTGGTGGCAC TCTGTAGAGAGGCGTCTATCTGTGCCTTGGAAGAAGACCGATCCGCAGAG AGGGTGTGCCAGAGGCACTTGCTCTTGGCCCTGCAACAGATCAGGCCCCA AATTACACCATCTGTTTTGGCCGCATATGATGCTTTTCGTGGTGCTCCTC ATACCATCCCTGGTAAAAGAGGGGCTGGTTGAGTGTTGATCTCGGGCTGG TGTGATTTGATCCAGAGCTTTAAAGCTAGGGTGGTGTTTGCCAAGAAGAG AAATTTATTCAGGATGTCTCGAGTATCATCATGATAACTAAGTAAGACTC GTCGTGACTTGAACCCTACTCTACCCTTATTGTAGTATTTATCTACCACC TTTGATGTTGATTCTGTGATCAACTTGTGGTAATGAAGTAGGTGTGGAAT GGTGAGAGGTATGTTGCAGTAGCGGTCAGTGCATCTAATTACATGGTCAC TGGGGAGGATGTCAATAGGATACAGGTTACGTAATCTCTGGTTTACTGAC ATGTACTTAATTTGACATAATGACAGGTGGTTCGTCAAGTGTAAACCATG CAAGTCTTTGCTTGGCCTGCTAGAGGCCTCACTTTCCACCGAGCAACCTC TTGGTGAAATGACCCCCCTGACTGCAAAGTTGTAAAATTTGCACAATCAT CGAAAGAGTTTCTATGAGTTGAGGCAGGGTAAACCACCATCACCACCCCT CGCTGATTGGACCAATCTCCTTCCCTACTTGATCTGGACAAAATTTGCCA CAAGCTTGCAAGAACTGTTGGAGCAGTGAGTATTGTAATGATGGGAAACA CGAAGGTACAAGGAGGCAAGCATGGTTGTGACATGGTGTCTTGCCAGGGT CTCCCCAGGTGTACACTACTTGTACCTCTCCTTTTGGCCCCGTGCGTCTA CTTGCTGTCTCACATTTTGTGTGTTCTAATTACTATAGTAGTAAGTGCAT TTTTTTGTGCAATAGTTTTACGTGAGGGGGAGATCCAAGACCAAGTGCCC GGTAGAGTTGAAGAGAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10351:2129..5596-

>mRNA_C-tenellus_contig10351.1.2 ID=mRNA_C-tenellus_contig10351.1.2|Name=mRNA_C-tenellus_contig10351.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=729bp|location=Sequence derived from alignment at C-tenellus_contig10351:2129..5596- (Choristocarpus tenellus KU2346)
ATGGGCATCTCCCCCCCCCGAGGTGTTTTGTTGTATGGACCTCCTGGATG
CAGTAAGACACTCATGGCACGTGCTCTGGCGACTGAGTCGGGCATGAACT
TCCTCGCTGTGAAAGGGCCAGAGTTACTGAGCAAGTGGCTAGGCGAATCC
GAACGTGCTCTGCAGTCCCTGTTTAAGAGGGCCAGGGCTGCTGCCCCTAC
CATTGTGTTTTTTGACGAGGTTGATGCCCTGGCCTGCAAGCGTGGTGGTG
GCACTGGGGCTGGGGCCACTGAACGTGTTCTCACTCAGCTTCTTACAGAA
CTGGATGGGATTCAGCTACTCAAGCGTGTGGTTGTTGTAGCTGCCACCAA
CCGGCCTGATGTAATTGACCCGGCCCTCCTGCGGCCAGGACGCCTGGATC
GTTTGGTGTATGTCCCCCCCCCAGACCTCGCCTCCAGAGAGGAGATCCTG
CGTATCTCACTGGGGTCTGTGCCTACCTCTGAGGACGTGGATTCAAGATT
ACTGGCGGACAAGACAGCAGGATTCTCGGGGGCTGAGGTGGTGGCACTCT
GTAGAGAGGCGTCTATCTGTGCCTTGGAAGAAGACCGATCCGCAGAGAGG
GTGTGCCAGAGGCACTTGCTCTTGGCCCTGCAACAGATCAGGCCCCAAAT
TACACCATCTGTTTTGGCCGCATATGATGCTTTTCGTGGTGCTCCTCATA
CCATCCCTGGTAAAAGAGGGGCTGGTTGA
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