mRNA_C-tenellus_contig10330.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10330.1.1
Unique NamemRNA_C-tenellus_contig10330.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: D8LU95_ECTSI (Fip1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU95_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.630e-44
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 GTNALVNVASSTSAGGKGDSRGTGGGPSKPLSAAAGIASLTPSMGAPGAVSRPAILSAGMYPPTAELQRATGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            GTN LVN    T+ GG   S       SKP+SAAAGIASL PS GAP A ++P+ L  G YPPTAELQ++TGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR
Sbjct:  275 GTNTLVNA---TTTGGTTAS-------SKPVSAAAGIASLVPSKGAPVATAKPS-LKPGEYPPTAELQQSTGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 380
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: A0A6H5JF87_9PHAE (Fip1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF87_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.950e-42
Identity = 85/117 (72.65%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 GTNALVNVASSTSAGGKGDSRGTGGGPSKPLSAAAGIASLTPSMGAPGAVSRPAILSAGMYPPTAELQRATGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            GTN LVN  S+T++G    S        KP+SAAAGIASL PS GAP A ++P+ L  G YPPTAELQ++TGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR
Sbjct:  274 GTNTLVN--STTTSGTTATS--------KPVSAAAGIASLVPSKGAPVATAKPS-LKPGEYPPTAELQQSTGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 379
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: A0A1W0A514_9STRA (Pre-mRNA polyadenylation factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A514_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.860e-16
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  181 YPPTAELQRATG----KTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            Y PT E     G    +TAFDVDID +EE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  113 YEPTFEELSLLGIGGRRTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDESSWRDYCTKQLQ 173
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: A0A067C040_SAPPC (Fip1 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C040_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 2.360e-16
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  181 YPPTAELQRATG----KTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            Y PT E     G    +TAFDVDID +EE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  124 YEPTFEELSLLGIGGRRTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDEASWRDYCAKQLQ 184
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: A0A835YKB3_9STRA (Fip1 motif-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.600e-16
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  181 YPPTAELQRATGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            YPP  ELQ   G++AF V +D +E+ PWR PGVD++DFFNYGFTE +WR Y   QLR
Sbjct:  207 YPPLEELQLRYGRSAFGVRMDELEDTPWRRPGVDLSDFFNYGFTEGTWRAYLLAQLR 263
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: A0A1V9YWA6_9STRA (Pre-mRNA polyadenylation factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWA6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.670e-16
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  181 YPPTAELQRATG----KTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            Y PT E     G    +TAFDVDID +EE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  123 YEPTFEELSLLGIGGRRTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDETSWRDYCAKQLQ 183
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: T0QKY1_SAPDV (Fip1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QKY1_SAPDV)

HSP 1 Score: 82.4 bits (202), Expect = 3.480e-16
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  181 YPPTAELQRATG----KTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 351
            Y PT E     G    +TAFDVDID +EE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  127 YEPTFEELSLLGIGGRRTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDEASWRDYCAKQLQ 187
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BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: UPI00155B1E59 (LOW QUALITY PROTEIN: FIP1[V]-like protein n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155B1E59)

HSP 1 Score: 80.5 bits (197), Expect = 2.930e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  196 ELQRATGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEK--QLR 351
            E    + KT FDVDID  EE+PWRHPGVDI+DFFN+GF E+SW+ YC++  QLR
Sbjct:   92 EFTLPSHKTIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLR 145
[Close]
BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: F6HYI9_VITVI (Fip1 domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=F6HYI9_VITVI)

HSP 1 Score: 80.5 bits (197), Expect = 2.970e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  196 ELQRATGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEK--QLR 351
            E    + KT FDVDID  EE+PWRHPGVDI+DFFN+GF E+SW+ YC++  QLR
Sbjct:  405 EFTLPSHKTIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLR 458
[Close]
BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Match: A0A7S4DHM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHM3_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 6.470e-15
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  181 YPPTAELQRATGK--TAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQL 348
            +PP     +  GK  +AFD++IDG+++ PWR PGVDI+D+FNYG TE +WR YC KQL
Sbjct:  143 FPPLPTELQHPGKRNSAFDIEIDGLDDHPWRRPGVDISDYFNYGLTEKTWREYCIKQL 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10330.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU95_ECTSI9.630e-4473.50Fip1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JF87_9PHAE2.950e-4272.65Fip1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1W0A514_9STRA1.860e-1662.30Pre-mRNA polyadenylation factor n=1 Tax=Thraustoth... [more]
A0A067C040_SAPPC2.360e-1662.30Fip1 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A835YKB3_9STRA2.600e-1659.65Fip1 motif-domain-containing protein n=1 Tax=Tribo... [more]
A0A1V9YWA6_9STRA2.670e-1662.30Pre-mRNA polyadenylation factor n=1 Tax=Achlya hyp... [more]
T0QKY1_SAPDV3.480e-1662.30Fip1 domain-containing protein n=1 Tax=Saprolegnia... [more]
UPI00155B1E592.930e-1562.96LOW QUALITY PROTEIN: FIP1[V]-like protein n=1 Tax=... [more]
F6HYI9_VITVI2.970e-1562.96Fip1 domain-containing protein n=2 Tax=Vitis TaxID... [more]
A0A7S4DHM3_HETAK6.470e-1555.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10330contigC-tenellus_contig10330:80..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU95
Preferred namefip1l1
PFAMsFip1
Model size351
Max annot lvl2759|Eukaryota
KEGG rclassRC01214,RC01958,RC03092,RC03093
KEGG koko:K02293,ko:K14405
KEGG ReactionR04786,R04787,R07510,R09652,R09653,R09654
KEGG Pathwayko00906,ko01100,ko01110,ko03015,map00906,map01100,map01110,map03015
KEGG ModuleM00097
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0098787,GO:0098789,GO:1901360
Exons2
Evalue1.58e-44
EggNOG OGsCOG5213@1|root,KOG1049@2759|Eukaryota
Ec32 ortholog descriptionPre-mRNA polyadenylation factor Fip1
Ec32 orthologEc-14_004180.1
EC1.3.5.5
Descriptionpre-mRNA cleavage required for polyadenylation
Cds size351
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.4712427-CDS-C-tenellus_contig10330:79..2261680789126.4712427-CDS-C-tenellus_contig10330:79..226Choristocarpus tenellus KU2346CDSC-tenellus_contig10330 80..226 -
1680789126.4872777-CDS-C-tenellus_contig10330:911..11151680789126.4872777-CDS-C-tenellus_contig10330:911..1115Choristocarpus tenellus KU2346CDSC-tenellus_contig10330 912..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10330.1.1prot_C-tenellus_contig10330.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10330 80..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10330.1.1

>prot_C-tenellus_contig10330.1.1 ID=prot_C-tenellus_contig10330.1.1|Name=mRNA_C-tenellus_contig10330.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=117bp
GTNALVNVASSTSAGGKGDSRGTGGGPSKPLSAAAGIASLTPSMGAPGAV
SRPAILSAGMYPPTAELQRATGKTAFDVDIDGMEEQPWRHPGVDIADFFN
YGFTEDSWRVYCEKQLR
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mRNA from alignment at C-tenellus_contig10330:80..1115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10330.1.1 ID=mRNA_C-tenellus_contig10330.1.1|Name=mRNA_C-tenellus_contig10330.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1036bp|location=Sequence derived from alignment at C-tenellus_contig10330:80..1115- (Choristocarpus tenellus KU2346)
GGCACCAATGCCCTCGTAAATGTGGCGTCCTCCACCTCTGCAGGGGGCAA
GGGAGATTCAAGGGGGACAGGCGGAGGGCCAAGTAAGCCGCTGTCTGCAG
CTGCTGGGATTGCATCCCTCACACCATCTATGGGGGCCCCAGGGGCAGTG
TCGAGGCCTGCGATACTCTCTGCAGGGATGTATCCTCCAACAGCTGAGCT
TCAGGTAGTTGGAATCTATGATATAAATAGAAAAGCCCTTAAAATTTATG
ATTGTGAGAGTGAATTTATGTGTTTCGGGGAAGGAACTGGGTGGGAGAAA
CGTTGGCATGGTACAAGGTACGATTAGGTAGCTGGTGTGGATTCCTAATC
ACTTCGTTGACGATTTTTTTTCTGTTTATCTGTTGATACGCAGTAAAGAT
TATGGGGTATAGTATAGTATAGTGCAGAGCAGGGCACCATGACCACTGAA
AGACAAAGTGTAATGCAACAATCCTGATTCTTCTATGATTGGGGTTGCTC
TATGCCCAAATGCGGTGATTCTATGTTCCAGAATGGTGTACAGTATGCAT
CACACCTTTGGAGCAATATTCATTTTGATGATTTTTTTCATGTTGAGAGA
AGCCTTTTTCCTGCTCTTGTATCAACACGTACAGTGTCATGTTGGTAAAC
ATATGTGCTGTCTCATCTTTGGCAGATAATTTTGTGCTCTAGTCTCATCT
CTGTTGGTGGTATTGTAGGTGTGTCCTCAAGTACAGTGCACCCTCGACCC
ATTGAAATTGGAACATTGAAATGAAAAATGTGCAGTGCGTACATACAGAA
ATTTGAAGCCTTTCTGATTCTGATGGCTGAGCTCAAGTACATTTCGTGGC
CTGATTGCACTAGTTTACCCACCTATGTGCTCTGGACAGCGGGCTACAGG
AAAGACAGCATTTGATGTTGATATTGATGGTATGGAGGAGCAGCCATGGA
GACACCCTGGGGTGGATATTGCTGACTTCTTTAACTATGGGTTCACAGAG
GATAGCTGGAGAGTCTATTGTGAAAAGCAGCTCAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10330:80..1115-

>mRNA_C-tenellus_contig10330.1.1 ID=mRNA_C-tenellus_contig10330.1.1|Name=mRNA_C-tenellus_contig10330.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=351bp|location=Sequence derived from alignment at C-tenellus_contig10330:80..1115- (Choristocarpus tenellus KU2346)
GGCACCAATGCCCTCGTAAATGTGGCGTCCTCCACCTCTGCAGGGGGCAA
GGGAGATTCAAGGGGGACAGGCGGAGGGCCAAGTAAGCCGCTGTCTGCAG
CTGCTGGGATTGCATCCCTCACACCATCTATGGGGGCCCCAGGGGCAGTG
TCGAGGCCTGCGATACTCTCTGCAGGGATGTATCCTCCAACAGCTGAGCT
TCAGCGGGCTACAGGAAAGACAGCATTTGATGTTGATATTGATGGTATGG
AGGAGCAGCCATGGAGACACCCTGGGGTGGATATTGCTGACTTCTTTAAC
TATGGGTTCACAGAGGATAGCTGGAGAGTCTATTGTGAAAAGCAGCTCAG
G
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