mRNA_C-tenellus_contig10326.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10326.1.1
Unique NamemRNA_C-tenellus_contig10326.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10326.1.1 vs. uniprot
Match: A0A6H5JL26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL26_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 6.420e-37
Identity = 66/95 (69.47%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    1 MPATPLFHPEDALRRMNGRLGNLTKKEASSLTTLRGFVRKQGLSLGLVRGPGEQHDVCLLRFLRARDFDERKALAALMSSLDWGATVGLSGLRGH 285
            MPATPLFHP +   +  GRLG LTK+EA+SL +L+   RKQGLSLGLVRGPGEQ+DVCLLRFLRA+ F+E++ALA+L+S ++WGA+VGLSGLRGH
Sbjct:  360 MPATPLFHPHNESSKGTGRLGRLTKREAASLASLKQLARKQGLSLGLVRGPGEQNDVCLLRFLRAQRFEEKRALASLVSCVEWGASVGLSGLRGH 454
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BLAST of mRNA_C-tenellus_contig10326.1.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.060e-36
Identity = 66/95 (69.47%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MPATPLFHPEDALRRMNGRLGNLTKKEASSLTTLRGFVRKQGLSLGLVRGPGEQHDVCLLRFLRARDFDERKALAALMSSLDWGATVGLSGLRGH 285
            MPATPLFHP++   +  GRLG LTK+EA+SL +L+   RKQGLSLGLVRGPGEQ+DVCLLRFLRA+ F+E++ALA+L+S ++WGA+VGLSGLRGH
Sbjct:    1 MPATPLFHPKNESSKGTGRLGRLTKREAASLASLKQLARKQGLSLGLVRGPGEQNDVCLLRFLRAQRFEEKRALASLVSCVEWGASVGLSGLRGH 95
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BLAST of mRNA_C-tenellus_contig10326.1.1 vs. uniprot
Match: A0A835Z1B8_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.990e-21
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 MPATPLFHPEDALRRMNGRLGNLTKKEASSLTTLRGFVRKQGLSLGLVRGPGEQHDVCLLRFLRARDFDERKALAALMSSLDWGATVGLSGLR 279
            MP T LFHP    R   GRLG+LTKKE ++L+  +  V+K+ L+L LV GPGEQ D+C+LR+LRA +FDE+KALAAL +S +W A V L  LR
Sbjct:    1 MPPTLLFHPMAPAR--PGRLGSLTKKEQAALSACKHAVKKKPLNLWLVGGPGEQEDLCVLRYLRASNFDEKKALAALSASAEWCAAVSLRQLR 91
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10326.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JL26_9PHAE6.420e-3769.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI57_ECTSI2.060e-3669.47CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z1B8_9STRA1.990e-2155.91CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10326contigC-tenellus_contig10326:3266..4396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LI57
PFAMsCRAL_TRIO
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.38e-37
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size285
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.1825552-CDS-C-tenellus_contig10326:3265..33341680789126.1825552-CDS-C-tenellus_contig10326:3265..3334Choristocarpus tenellus KU2346CDSC-tenellus_contig10326 3266..3334 -
1680789126.194828-CDS-C-tenellus_contig10326:4180..43961680789126.194828-CDS-C-tenellus_contig10326:4180..4396Choristocarpus tenellus KU2346CDSC-tenellus_contig10326 4181..4396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10326.1.1prot_C-tenellus_contig10326.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10326 3266..4396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10326.1.1

>prot_C-tenellus_contig10326.1.1 ID=prot_C-tenellus_contig10326.1.1|Name=mRNA_C-tenellus_contig10326.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=95bp
MPATPLFHPEDALRRMNGRLGNLTKKEASSLTTLRGFVRKQGLSLGLVRG
PGEQHDVCLLRFLRARDFDERKALAALMSSLDWGATVGLSGLRGH
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mRNA from alignment at C-tenellus_contig10326:3266..4396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10326.1.1 ID=mRNA_C-tenellus_contig10326.1.1|Name=mRNA_C-tenellus_contig10326.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1131bp|location=Sequence derived from alignment at C-tenellus_contig10326:3266..4396- (Choristocarpus tenellus KU2346)
ATGCCTGCCACCCCTCTTTTCCATCCGGAAGATGCCTTGCGGAGGATGAA
TGGTCGACTCGGAAATCTCACGAAGAAGGAAGCCTCGTCGTTGACCACTC
TCAGAGGTTTCGTTCGCAAGCAGGGCCTCAGCCTTGGACTTGTGCGGGGA
CCTGGCGAGCAACACGATGTGTGTCTTCTTCGTTTCCTTCGTGCTAGGGA
CTTTGACGAGAGGAAGGTGCATAAATCATCCTGTGTATGTGGGAAGCAAG
TCGAACGACTCTGAATCATATTGGGAAGGTCGAAAGTTTTGAGTTTAGAA
CTATGTGCAACACCTGGGTCGATCCTGGTCGATGTTGGCGAAGCATATTT
TTTTGTCCTCCACACCTAGAAGAGATAGATTTGAATGCGAATCCACTATT
TGTTGAATATTAAACCGTACTCAATTCCAGGGCAGTGAGCCCCCTTCAGT
GATGATTATGCTCAAATTTGCTGACAGGTCTCCTATCGGTTCAACCTTCC
CCGCAAATTTTCGTTCATCTATCACGGATCAAACACACACATTTTTGTGC
AATTTAGCCCACTATGGTTTAGGTAGTAACTATTCGACATACCTTTAGCC
TAGGTTCAGAAGCATCACAATGGGAAAATCAGCAGTCTCATGACGGATTT
CTCGGTGGTATCGATCAGGTAGGTCGCCACTCTTTCTGCACAGCTCTTGA
CTGTGACGGAGTAAACAGGAAGAATGCCGTTGCAGTGCCAACTCTCATTA
TGTTTTCCCTGCAAACATTTCTTGCACTTTTGTCAATCGTTATGATCCGT
CAATGTCAGTGCGCTGGACAGTAGGATGCTAGAATTTGTCCTCTTGCTAA
CTTGGTGGATGACATATATCTTTCAATCTCCTACTATGCATTCAACCTAA
GAACCGACAAGATAGCGTCGACTGTGGCGTCCTGCCCTTTCATACACAAT
AGCACCTCACTATGTGCCTTTCACTGAATGCAGTTATTCGACCCAAAAGT
TAAGGTGGGCAGACATCAACATTATTTATGCTTATCCGTTCCCAACTCCC
TTTATCGGCCAGGCTCTTGCAGCTCTCATGTCGAGTCTGGACTGGGGAGC
GACGGTTGGCCTGTCAGGGCTTCGTGGTCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig10326:3266..4396-

>mRNA_C-tenellus_contig10326.1.1 ID=mRNA_C-tenellus_contig10326.1.1|Name=mRNA_C-tenellus_contig10326.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=285bp|location=Sequence derived from alignment at C-tenellus_contig10326:3266..4396- (Choristocarpus tenellus KU2346)
ATGCCTGCCACCCCTCTTTTCCATCCGGAAGATGCCTTGCGGAGGATGAA
TGGTCGACTCGGAAATCTCACGAAGAAGGAAGCCTCGTCGTTGACCACTC
TCAGAGGTTTCGTTCGCAAGCAGGGCCTCAGCCTTGGACTTGTGCGGGGA
CCTGGCGAGCAACACGATGTGTGTCTTCTTCGTTTCCTTCGTGCTAGGGA
CTTTGACGAGAGGAAGGCTCTTGCAGCTCTCATGTCGAGTCTGGACTGGG
GAGCGACGGTTGGCCTGTCAGGGCTTCGTGGTCAC
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