mRNA_C-tenellus_contig10307.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10307.1.1
Unique NamemRNA_C-tenellus_contig10307.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10307.1.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.460e-45
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    4 CKRRRRRFNVQCKEKGHEQKGVKATLRYFECTNCHRRCSSTERAGPQTGCENCGKHNAWQRCGAHSGKGPATGQRDKRFVAALSEWTDQRDLSLAATDCR 303
            CK RR RFN  CK+ GH+QKGVKATLR+FECTNC +RCSSTER  P+TGCE+CG+H+ W+RCGA  G+GPA G RDKRFVAALSEWTDQRDLSLAA DCR
Sbjct:  751 CKTRRSRFNKHCKDLGHDQKGVKATLRFFECTNCRKRCSSTERV-PRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSEWTDQRDLSLAAPDCR 849
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BLAST of mRNA_C-tenellus_contig10307.1.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.970e-35
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 QCKRRRRRFNVQCKEKGHEQKGVKATLRYFECTNCHRRCSSTERAGPQTGCENCGKHNAWQRCGAHSGKGPATGQRDKRFVAALSEWTDQR 273
            QCK RR RFN +C++ GH+QKGVKATLR+FECTNC +RCSSTER  P+TGCE+CG+H+ W+RCGA  G+GPA G RDKRFVAALSE   +R
Sbjct:  373 QCKTRRSRFNKRCRDLGHDQKGVKATLRFFECTNCRKRCSSTERV-PRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSESGGER 462
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10307.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE9.460e-4576.00Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI2.970e-3569.23Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10307contigC-tenellus_contig10307:112..3291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LM23
Preferred nameMCM10
PFAMsMcm10,zf-primase
Model size306
Max annot lvl2759|Eukaryota
KEGG koko:K10736
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
Exons2
Evalue4.87e-36
EggNOG OGsKOG3056@1|root,KOG3056@2759|Eukaryota
Ec32 ortholog descriptionReplication factor Mcm10
Ec32 orthologEc-14_002590.1
DescriptionDNA replication origin binding
Cds size306
COG categoryT
BRITEko00000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.5923545-CDS-C-tenellus_contig10307:111..3691680789125.5923545-CDS-C-tenellus_contig10307:111..369Choristocarpus tenellus KU2346CDSC-tenellus_contig10307 112..369 +
1680789125.6061423-CDS-C-tenellus_contig10307:3243..32911680789125.6061423-CDS-C-tenellus_contig10307:3243..3291Choristocarpus tenellus KU2346CDSC-tenellus_contig10307 3244..3291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10307.1.1prot_C-tenellus_contig10307.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10307 112..3291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10307.1.1

>prot_C-tenellus_contig10307.1.1 ID=prot_C-tenellus_contig10307.1.1|Name=mRNA_C-tenellus_contig10307.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=102bp
QCKRRRRRFNVQCKEKGHEQKGVKATLRYFECTNCHRRCSSTERAGPQTG
CENCGKHNAWQRCGAHSGKGPATGQRDKRFVAALSEWTDQRDLSLAATDC
R*
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mRNA from alignment at C-tenellus_contig10307:112..3291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10307.1.1 ID=mRNA_C-tenellus_contig10307.1.1|Name=mRNA_C-tenellus_contig10307.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3180bp|location=Sequence derived from alignment at C-tenellus_contig10307:112..3291+ (Choristocarpus tenellus KU2346)
CAGTGCAAGCGTCGCCGGCGCCGTTTCAATGTACAGTGTAAGGAGAAGGG
TCATGAACAGAAGGGGGTCAAGGCTACCCTGAGGTACTTTGAGTGCACTA
ACTGCCACAGGAGATGTTCCTCCACTGAGCGCGCTGGTCCTCAGACTGGT
TGCGAAAACTGTGGGAAGCACAACGCCTGGCAGAGGTGTGGTGCACACAG
CGGAAAGGGTCCGGCCACCGGACAACGCGACAAGCGCTTCGTGGCTGCCC
TGTCTGAGGTGATTGGAAAAAATATCATAGAAATGGAGGAGTTGTATGTA
GGTGTGTGTGTGTGTGTGTAATGTCACTGAGGTATGAGGTTTGTTGTTGT
GGAATATGTAAGATTCAATTGTATGAGTACCATAAGTTCGAATCTTGTGG
TTCAACCCTGGGGATGAGCATTGTGATTAAGGCGCTCGGTGCCGTCTTGA
ATTGAGCTATAGAGACGGGAGGGTGTGTACGTAGGAGAGAAAACGGAAAG
GTATGTACTGGGCAACGTAACACTCAAGATTGTGTTATGCCTGTAACACT
GGAGACGAAAACGTAAGTAACGCAGAGTACTTAATGTTTTGTGAAGTGTT
ACAACACAGAGTGTTAACATAGTGTTGTCTGAGGTGTGCCATAGTGATTG
TCAGGGTGTTTATTGGTTAAGAGGAGGGGGAATAGTTGCAAATATCCATG
GGTTGGCATCTGGCAACAACTTGGTCAGCATAACACTCGGCGCTGTTATC
TCCATAGCACAAAGTTATCCCACGCTGTGTATAGTGTTAAAGGACTAGCT
CTCGTGGTTGAAGGAGGTAGTCTCATTGTCGTTGTTGGATACTTGTCTAT
ATTTTATTTTTGTCATACTTCTCCATATTCAGTTATTCTAAAAAAGAATG
AGATGTTTCATATTTTTTTATTGAGAGGTTTGTCACTGGTCTCTGCGACT
TTTTTTAACCCTAACCCTTTTTGTCCGCACGGTAGAATAAATTTTGCCCT
CTTGAAATTTTGCAGATGTGATGTGTCAGGGGGAAAACCAATGAAGTAAG
TATTGTTAATTGTGTACTACTACCTCTGTGCCGCAAGTTTGTGCCACCAA
ACGTCTGAAATCGCCCAGCAACAACGGTGCCGAATCGGACGATAACCCTA
ACCCTAACCCCATAGAATGAAATAGGGTTGACAATCTCGGCTTTCAGAAA
AGGTGGGGGTCGAGGATCATCAGGTACAAACTCCAGGTACTTCAAGTCGT
CAAAGTAGGGGCCTTTTTGGGGGGATTTTGAGGCCAGAACTGGGGAGGGT
CAGAACGCCGGCATGGCAACCCGCGTCGACCCCCTCACTTAGGAAGGGTG
CCCAAGTGTCCCTGAATACTAGGGTTGCGCTCGCAGTGTGGCAAGCCCTC
ACGATGGTCCCTGGTGAGCATAAACTGCCACGACATGTTGGGCCGGCCCT
CACAGCGGAGTTTGGAGGGTCCAAGCGTTTGCATGCAAGGGGTCTGGGAG
GACGTCGCCGATCAGCTCTCTGCCCATGGCCACACGCTTGACCTAGGCGT
GGTGGCATGTAGTGGGCAGCCGTTGGAGCTCACACCAACCAAGATGGCCA
CAATACATAGTATCAACTTCAATAATTGGTCATCCACAGTGCATCAGGTG
ACATTGAAGATGGCCGCAAAGGGGCTGAATTATAGCACGAGCACCATAAA
CAGGTGGTTGGATGGTATGGGGGGCATGTCAAATCGCCACTGGATCAAAC
CCAAGGTTAAATCGTAGCAAAAGGTATGGAGAACGGACTTTGTTTGCGAA
CAAGTGGACCCGAAACGTGGTGGTGTGTACACCTCCATGACGAACACGAT
CCATGTGGATGAAACCTGGTTTTACATTATGGCTGATGGTAAAGGGTTAG
GGTAATATGCCGCATGAGGATACTAGTGGCCTTCCAGGGTTCCCCGCTGT
GGAGCACAAGAGTCATCTCCCCTAAACCATGATAAGAGTGATCATTGCAC
CCAGATTCGACTCACAGCTTTGACTGAAAGCTTGGTGTTTGGCGTGTGTG
CGCACCAAAAACGGCAGACAGGACAAGCAAGAAACATAAAAAGGGGGATC
TGTATGTGCAGGACTGTACTTTAGACCATTTGTGGTACAGGAAGTGGTAC
ACGGAGGAGTTACCGCCTGCAATCAAGACCAAGATGCCTTGATTGCAGGG
GAAGCATGTTGTCGTTCAGCAAGACAGTGCCACCCCCCACACATGGGCAA
GGGCAACTAAGAAATTTTGTCAGGGGCATGGAAGCCCGAGGGGTGGCCGA
TTAGGCTTGTGACGCAGCCATCTAACTCCCCTAACCTCAACATCATGGAC
CTGCGCTTCTTGAGGTCTTTGAAGTGCCAGGTGATGGGGGAACGGTTTGG
GTCTGTCGAGGAGATGGCGAAGGTCATTAAGAAACAGTATGAGGAGTAGG
ATGAAACCACACTTGAGAGGGCTTGGCAGCTCCTTTTTGTGGTGTACAAT
CAAGTACTTAGATACAAAGGGAGGAATGACTTCAGTGTGGAGCACACAGG
GGTAAGGAAGGGACAGTTGTCTGGTGAGTTTGAAAACACACCGGAGGTAG
ACATGGAGGCTTTTTAGGGGTTTTGTTTTGATTTGCTACAAACTCTGAGG
TAAGTGCACACATACCCCTCTCTCTCTCAGGGCCAATCTCGAATCCTCTA
GATCATCCCTAGTACATGTGCATATATGTTACACCTATACAGTCACATGT
GACAATAACCTCAAACCGTGGGATTTCCAACACCCTTGTAGGCATTTTAC
AATGCGTTGTACTCCTGGAGTATGAGATTTGTTCTCATAGTGTGTGTGAA
CTCTTCCATGTGCTGTACAGCATGTATGCTTGTAATGCAATTTTAACCTT
TTTTTTAAAGAGGTGAGGTGTCTCTTGTGATTAGGTTCTGATGATTTGAA
CAATATACTGTGCTCATACGCTACCAAAAAAGATGATGCCTTAGCAAACT
CGTATTTGGCACACAGTACAAACCACTTGATTGCATGACACTCACTCGCT
TGTCTACAAAACAAGTTCGTTTGACAGCCTCCCTTCCCTTTCCTTCCCTA
TGTTTACCTTGTCAATATTCTTGAAATCTCAGTGGACAGACCAGAGAGAT
CTCAGCCTTGCTGCCACAGATTGCAGGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10307:112..3291+

>mRNA_C-tenellus_contig10307.1.1 ID=mRNA_C-tenellus_contig10307.1.1|Name=mRNA_C-tenellus_contig10307.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=306bp|location=Sequence derived from alignment at C-tenellus_contig10307:112..3291+ (Choristocarpus tenellus KU2346)
CAGTGCAAGCGTCGCCGGCGCCGTTTCAATGTACAGTGTAAGGAGAAGGG
TCATGAACAGAAGGGGGTCAAGGCTACCCTGAGGTACTTTGAGTGCACTA
ACTGCCACAGGAGATGTTCCTCCACTGAGCGCGCTGGTCCTCAGACTGGT
TGCGAAAACTGTGGGAAGCACAACGCCTGGCAGAGGTGTGGTGCACACAG
CGGAAAGGGTCCGGCCACCGGACAACGCGACAAGCGCTTCGTGGCTGCCC
TGTCTGAGTGGACAGACCAGAGAGATCTCAGCCTTGCTGCCACAGATTGC
AGGTAA
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